MD06G1212000.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0015920
Physical Location & Seq
Reverse (-)
34463923 .. 34464678
756 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1212000.v1.1.491

Sequence Viewer

Length: 186 bp
ATGGCAGGGAATACTTGGGCCTACGTCCGGATCATCTCCGGCACCATTCTCGGTGGCATTCTCGGCTTCTACGTCATGGACCGCGCCGAGAAAAGCTACAAGGAGAAAGTGCGGGAGAGGCTGAGAAAGTATGAAATTGAAATGAAGAAGAGAGAGAAATTGGACGAGGTTGAAGAGTCTCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

62

Amino Acids

7.23

Weight (kDa)

9.0

Isoelectric Point (pI)

37.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015920)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18510
fragaria_vesca FvH4_5g12630
malus_domestica MD06G1212000.v1.1 MD14G1222600.v1.1
pyrus_communis pycom14g18430
rosa_chinensis RchiOBHm_Chr7g0184711
rosa_laevigata RLG00000004957
rosa_multiflora Rmu_ssc0000289.1_g000021
rosa_roxburghii Rroxscaffold_3G00269410
rosa_rugosa Rorug06G0464600
rosa_samantha Rh7AG078300 Rh7BG069000 Rh7CG069800 Rh7DG069200
rosa_wichuraiana Rw7G005710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 41
AccII CGCG 1 cut(s) 84
AccIII TCCGGA 1 cut(s) 27
AciI CCGC 2 cut(s) 82, 112
AclWI GGATC 1 cut(s) 38
AfiI CCNNNNNNNGG 1 cut(s) 27
AgsI TTSAA 2 cut(s) 140, 173
AluBI AGCT 1 cut(s) 96
AluI AGCT 1 cut(s) 96
AlwI GGATC 1 cut(s) 38
Aor13HI TCCGGA 1 cut(s) 27
AoxI GGCC 1 cut(s) 18
AspLEI GCGC 1 cut(s) 86
AspS9I GGNCC 2 cut(s) 18, 79
AvaII GGWCC 1 cut(s) 79
BanI GGYRCC 1 cut(s) 41
BcgI CGANNNNNNTGC 2 cut(s) 31, 65
BfmI CTRYAG 1 cut(s) 182
Bme18I GGWCC 1 cut(s) 79
BmgT120I GGNCC 2 cut(s) 18, 79
BmiI GGNNCC 1 cut(s) 43
BsaWI WCCGGW 1 cut(s) 27
Bsc4I CCNNNNNNNGG 1 cut(s) 27
BseAI TCCGGA 1 cut(s) 27
BseLI CCNNNNNNNGG 1 cut(s) 27
BseMII CTCAG 1 cut(s) 113
Bsh1236I CGCG 1 cut(s) 84
BshFI GGCC 1 cut(s) 20
BshNI GGYRCC 1 cut(s) 41
BsiSI CCGG 2 cut(s) 28, 39
BslI CCNNNNNNNGG 1 cut(s) 27
BsmI GAATGC 1 cut(s) 57
BsnI GGCC 1 cut(s) 20
Bsp13I TCCGGA 1 cut(s) 27
Bsp143I GATC 1 cut(s) 30
BspACI CCGC 2 cut(s) 82, 112
BspANI GGCC 1 cut(s) 20
BspCNI CTCAG 1 cut(s) 114
BspEI TCCGGA 1 cut(s) 27
BspFNI CGCG 1 cut(s) 84
BspLI GGNNCC 1 cut(s) 43
BspPI GGATC 1 cut(s) 38
BspT107I GGYRCC 1 cut(s) 41
BssMI GATC 1 cut(s) 30
Bst6I CTCTTC 2 cut(s) 143, 168
BstDEI CTNAG 1 cut(s) 122
BstFNI CGCG 1 cut(s) 84
BstHHI GCGC 1 cut(s) 86
BstKTI GATC 1 cut(s) 33
BstMBI GATC 1 cut(s) 30
BstMWI GCNNNNNNNGC 2 cut(s) 63, 118
BstSFI CTRYAG 1 cut(s) 182
BstUI CGCG 1 cut(s) 84
BsuRI GGCC 1 cut(s) 20
CfoI GCGC 1 cut(s) 86
Cfr13I GGNCC 2 cut(s) 18, 79
CviAII CATG 1 cut(s) 76
CviJI RGCY 4 cut(s) 20, 66, 96, 121
CviKI_1 RGCY 4 cut(s) 20, 66, 96, 121
DdeI CTNAG 1 cut(s) 122
DpnI GATC 1 cut(s) 32
DpnII GATC 1 cut(s) 30
Eam1104I CTCTTC 2 cut(s) 143, 168
EarI CTCTTC 2 cut(s) 143, 168
Eco47I GGWCC 1 cut(s) 79
FaeI CATG 1 cut(s) 79
FaiI YATR 2 cut(s) 77, 132
FatI CATG 1 cut(s) 75
FauI CCCGC 1 cut(s) 105
GlaI GCGC 1 cut(s) 85
HaeIII GGCC 1 cut(s) 20
HapII CCGG 2 cut(s) 28, 39
HhaI GCGC 1 cut(s) 86
Hin1II CATG 1 cut(s) 79
Hin6I GCGC 1 cut(s) 84
HinP1I GCGC 1 cut(s) 84
HinfI GANTC 1 cut(s) 176
HpaII CCGG 2 cut(s) 28, 39
Hpy188III TCNNGA 1 cut(s) 28
HpyCH4IV ACGT 2 cut(s) 24, 72
HpyF10VI GCNNNNNNNGC 2 cut(s) 63, 118
HpyF3I CTNAG 1 cut(s) 122
HpySE526I ACGT 2 cut(s) 24, 72
Hsp92II CATG 1 cut(s) 79
HspAI GCGC 1 cut(s) 84
Kpn2I TCCGGA 1 cut(s) 27
Kzo9I GATC 1 cut(s) 30
LpnPI CCDG 2 cut(s) 41, 52
MaeII ACGT 2 cut(s) 24, 72
MalI GATC 1 cut(s) 32
MboI GATC 1 cut(s) 30
MboII GAAGA 3 cut(s) 157, 160, 185
MluCI AATT 2 cut(s) 135, 158
MlyI GAGTC 1 cut(s) 185
MnlI CCTC 2 cut(s) 111, 160
MroI TCCGGA 1 cut(s) 27
MspI CCGG 2 cut(s) 28, 39
Mva1269I GAATGC 1 cut(s) 57
MvnI CGCG 1 cut(s) 84
MwoI GCNNNNNNNGC 2 cut(s) 63, 118
NdeII GATC 1 cut(s) 30
NlaIII CATG 1 cut(s) 79
NlaIV GGNNCC 1 cut(s) 43
NmeAIII GCCGAG 2 cut(s) 42, 112
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PctI GAATGC 1 cut(s) 57
PleI GAGTC 1 cut(s) 184
PpsI GAGTC 1 cut(s) 184
PspN4I GGNNCC 1 cut(s) 43
PspPI GGNCC 2 cut(s) 18, 79
Sau3AI GATC 1 cut(s) 30
Sau96I GGNCC 2 cut(s) 18, 79
SchI GAGTC 1 cut(s) 185
SetI ASST 4 cut(s) 27, 75, 98, 171
SfcI CTRYAG 1 cut(s) 182
SinI GGWCC 1 cut(s) 79
Sse9I AATT 2 cut(s) 135, 158
SsiI CCGC 2 cut(s) 82, 112
TaiI ACGT 2 cut(s) 27, 75
TasI AATT 2 cut(s) 135, 158
TspDTI ATGAA 2 cut(s) 147, 158
VpaK11BI GGWCC 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.