pycom14g18430

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0015920
Physical Location & Seq
Reverse (-)
20091522 .. 20092033
512 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g18430.1

Sequence Viewer

Length: 327 bp
ATGGTAGGCCAATTGGATCTGTTAACCGGTTCACTGACCCGTCCGACTCGACACATTTACAAGTCAAGAGATCCACGTCCACCTTCTGGGCGCCGCTTGAAACTTTCCCGAGAAAATCAAGGAAAGAAAGCGAGAGGGAAAATGGCAGGGAATACTTGGGCCTATGTCCGGATCATCTCCGGCACCATTCTCGGTGGCATTCTCGGCTTCTACGTCATGGACCGCGCCGAGAAAAGCTACAAGGAGAAAGTGCAGGAGAGGCTGAGGAAGTATGAAATTGAAATGAAGAAGAGAGAGAAATTGGATGAGTTTGATGAGTCTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

12.59

Weight (kDa)

10.14

Isoelectric Point (pI)

45.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015920)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18510
fragaria_vesca FvH4_5g12630
malus_domestica MD06G1212000.v1.1 MD14G1222600.v1.1
pyrus_communis pycom14g18430
rosa_chinensis RchiOBHm_Chr7g0184711
rosa_laevigata RLG00000004957
rosa_multiflora Rmu_ssc0000289.1_g000021
rosa_roxburghii Rroxscaffold_3G00269410
rosa_rugosa Rorug06G0464600
rosa_samantha Rh7AG078300 Rh7BG069000 Rh7CG069800 Rh7DG069200
rosa_wichuraiana Rw7G005710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 90, 182
AccB7I CCANNNNNTGG 1 cut(s) 86
AccII CGCG 1 cut(s) 225
AccIII TCCGGA 1 cut(s) 168
AciI CCGC 2 cut(s) 94, 223
AclWI GGATC 3 cut(s) 24, 65, 179
AcyI GRCGYC 1 cut(s) 91
AfiI CCNNNNNNNGG 2 cut(s) 86, 168
AgeI ACCGGT 1 cut(s) 26
AgsI TTSAA 2 cut(s) 100, 281
AjiI CACGTC 1 cut(s) 77
AluBI AGCT 1 cut(s) 237
AluI AGCT 1 cut(s) 237
AlwI GGATC 3 cut(s) 24, 65, 179
Ama87I CYCGRG 1 cut(s) 108
Aor13HI TCCGGA 1 cut(s) 168
AoxI GGCC 2 cut(s) 7, 159
AsiGI ACCGGT 1 cut(s) 26
AspLEI GCGC 2 cut(s) 93, 227
AspS9I GGNCC 2 cut(s) 159, 220
AvaI CYCGRG 1 cut(s) 108
AvaII GGWCC 1 cut(s) 220
BanI GGYRCC 2 cut(s) 90, 182
BbvCI CCTCAGC 1 cut(s) 263
BcgI CGANNNNNNTGC 2 cut(s) 172, 206
BfoI RGCGCY 1 cut(s) 94
BisI GCNGC 1 cut(s) 94
BlsI GCNGC 1 cut(s) 95
Bme18I GGWCC 1 cut(s) 220
BmeT110I CYCGRG 1 cut(s) 108
BmgBI CACGTC 1 cut(s) 77
BmgT120I GGNCC 2 cut(s) 159, 220
BmiI GGNNCC 2 cut(s) 92, 184
Bpu10I CCTNAGC 1 cut(s) 263
BsaHI GRCGYC 1 cut(s) 91
BsaWI WCCGGW 2 cut(s) 26, 168
Bsc4I CCNNNNNNNGG 2 cut(s) 86, 168
Bse118I RCCGGY 1 cut(s) 26
BseAI TCCGGA 1 cut(s) 168
BseGI GGATG 1 cut(s) 310
BseLI CCNNNNNNNGG 2 cut(s) 86, 168
BseMII CTCAG 1 cut(s) 254
BsgI GTGCAG 1 cut(s) 272
Bsh1236I CGCG 1 cut(s) 225
BshFI GGCC 2 cut(s) 9, 161
BshNI GGYRCC 2 cut(s) 90, 182
BshTI ACCGGT 1 cut(s) 26
BsiHKCI CYCGRG 1 cut(s) 108
BsiSI CCGG 3 cut(s) 27, 169, 180
BslI CCNNNNNNNGG 2 cut(s) 86, 168
BsmI GAATGC 1 cut(s) 198
BsnI GGCC 2 cut(s) 9, 161
BsoBI CYCGRG 1 cut(s) 108
Bsp13I TCCGGA 1 cut(s) 168
Bsp143I GATC 3 cut(s) 16, 70, 171
BspACI CCGC 2 cut(s) 94, 223
BspANI GGCC 2 cut(s) 9, 161
BspCNI CTCAG 1 cut(s) 255
BspEI TCCGGA 1 cut(s) 168
BspFNI CGCG 1 cut(s) 225
BspLI GGNNCC 2 cut(s) 92, 184
BspPI GGATC 3 cut(s) 24, 65, 179
BspT107I GGYRCC 2 cut(s) 90, 182
BsrFI RCCGGY 1 cut(s) 26
BssAI RCCGGY 1 cut(s) 26
BssMI GATC 3 cut(s) 16, 70, 171
BssNI GRCGYC 1 cut(s) 91
Bst6I CTCTTC 1 cut(s) 284
BstACI GRCGYC 1 cut(s) 91
BstDEI CTNAG 2 cut(s) 263, 321
BstF5I GGATG 1 cut(s) 310
BstFNI CGCG 1 cut(s) 225
BstH2I RGCGCY 1 cut(s) 94
BstHHI GCGC 2 cut(s) 93, 227
BstKTI GATC 3 cut(s) 19, 73, 174
BstMBI GATC 3 cut(s) 16, 70, 171
BstMWI GCNNNNNNNGC 2 cut(s) 204, 259
BstUI CGCG 1 cut(s) 225
BstX2I RGATCY 2 cut(s) 16, 70
BstYI RGATCY 2 cut(s) 16, 70
BsuRI GGCC 2 cut(s) 9, 161
BtrI CACGTC 1 cut(s) 77
BtsCI GGATG 1 cut(s) 310
BtsIMutI CAGTG 1 cut(s) 32
CfoI GCGC 2 cut(s) 93, 227
Cfr10I RCCGGY 1 cut(s) 26
Cfr13I GGNCC 2 cut(s) 159, 220
CspAI ACCGGT 1 cut(s) 26
CviAII CATG 1 cut(s) 217
CviJI RGCY 5 cut(s) 9, 161, 207, 237, 262
CviKI_1 RGCY 5 cut(s) 9, 161, 207, 237, 262
DdeI CTNAG 2 cut(s) 263, 321
DinI GGCGCC 1 cut(s) 92
DpnI GATC 3 cut(s) 18, 72, 173
DpnII GATC 3 cut(s) 16, 70, 171
Eam1104I CTCTTC 1 cut(s) 284
EarI CTCTTC 1 cut(s) 284
Eco47I GGWCC 1 cut(s) 220
Eco88I CYCGRG 1 cut(s) 108
EgeI GGCGCC 1 cut(s) 92
EheI GGCGCC 1 cut(s) 92
FaeI CATG 1 cut(s) 220
FaiI YATR 3 cut(s) 165, 218, 273
FatI CATG 1 cut(s) 216
Fnu4HI GCNGC 1 cut(s) 94
FokI GGATG 1 cut(s) 317
Fsp4HI GCNGC 1 cut(s) 94
GlaI GCGC 2 cut(s) 92, 226
GluI GCNGC 1 cut(s) 94
HaeII RGCGCY 1 cut(s) 94
HaeIII GGCC 2 cut(s) 9, 161
HapII CCGG 3 cut(s) 27, 169, 180
HhaI GCGC 2 cut(s) 93, 227
Hin1I GRCGYC 1 cut(s) 91
Hin1II CATG 1 cut(s) 220
Hin6I GCGC 2 cut(s) 91, 225
HinP1I GCGC 2 cut(s) 91, 225
HincII GTYRAC 1 cut(s) 24
HindII GTYRAC 1 cut(s) 24
HinfI GANTC 2 cut(s) 46, 317
HpaI GTTAAC 1 cut(s) 24
HpaII CCGG 3 cut(s) 27, 169, 180
Hpy166II GTNNAC 3 cut(s) 24, 32, 80
Hpy188I TCNGA 1 cut(s) 45
Hpy188III TCNNGA 3 cut(s) 66, 108, 169
Hpy8I GTNNAC 3 cut(s) 24, 32, 80
HpyAV CCTTC 1 cut(s) 93
HpyCH4IV ACGT 2 cut(s) 76, 213
HpyCH4V TGCA 1 cut(s) 253
HpyF10VI GCNNNNNNNGC 2 cut(s) 204, 259
HpyF3I CTNAG 2 cut(s) 263, 321
HpySE526I ACGT 2 cut(s) 76, 213
Hsp92I GRCGYC 1 cut(s) 91
Hsp92II CATG 1 cut(s) 220
HspAI GCGC 2 cut(s) 91, 225
KasI GGCGCC 1 cut(s) 90
Kpn2I TCCGGA 1 cut(s) 168
KspAI GTTAAC 1 cut(s) 24
Kzo9I GATC 3 cut(s) 16, 70, 171
LpnPI CCDG 6 cut(s) 40, 72, 132, 182, 193, 239
MaeII ACGT 2 cut(s) 76, 213
MalI GATC 3 cut(s) 18, 72, 173
MboI GATC 3 cut(s) 16, 70, 171
MboII GAAGA 2 cut(s) 298, 301
MfeI CAATTG 1 cut(s) 11
MflI RGATCY 2 cut(s) 16, 70
MluCI AATT 3 cut(s) 11, 276, 299
Mly113I GGCGCC 1 cut(s) 91
MlyI GAGTC 2 cut(s) 40, 326
MmeI TCCRAC 1 cut(s) 68
MnlI CCTC 3 cut(s) 128, 252, 258
MroI TCCGGA 1 cut(s) 168
MseI TTAA 1 cut(s) 23
MspI CCGG 3 cut(s) 27, 169, 180
MunI CAATTG 1 cut(s) 11
Mva1269I GAATGC 1 cut(s) 198
MvnI CGCG 1 cut(s) 225
MwoI GCNNNNNNNGC 2 cut(s) 204, 259
NarI GGCGCC 1 cut(s) 91
NdeII GATC 3 cut(s) 16, 70, 171
NlaIII CATG 1 cut(s) 220
NlaIV GGNNCC 2 cut(s) 92, 184
NmeAIII GCCGAG 2 cut(s) 183, 253
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PctI GAATGC 1 cut(s) 198
PflMI CCANNNNNTGG 1 cut(s) 86
PinAI ACCGGT 1 cut(s) 26
PkrI GCNGC 1 cut(s) 95
PleI GAGTC 2 cut(s) 40, 325
PluTI GGCGCC 1 cut(s) 94
PpsI GAGTC 2 cut(s) 40, 325
PspN4I GGNNCC 2 cut(s) 92, 184
PspPI GGNCC 2 cut(s) 159, 220
PsuI RGATCY 2 cut(s) 16, 70
SaqAI TTAA 1 cut(s) 23
SatI GCNGC 1 cut(s) 94
Sau3AI GATC 3 cut(s) 16, 70, 171
Sau96I GGNCC 2 cut(s) 159, 220
SchI GAGTC 2 cut(s) 40, 326
SetI ASST 4 cut(s) 79, 85, 216, 239
SfoI GGCGCC 1 cut(s) 92
SinI GGWCC 1 cut(s) 220
Sse9I AATT 3 cut(s) 11, 276, 299
SsiI CCGC 2 cut(s) 94, 223
SspDI GGCGCC 1 cut(s) 90
TaiI ACGT 2 cut(s) 79, 216
TaqI TCGA 1 cut(s) 49
TasI AATT 3 cut(s) 11, 276, 299
TauI GCSGC 1 cut(s) 96
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TscAI CASTG 1 cut(s) 39
TspDTI ATGAA 2 cut(s) 288, 299
TspRI CASTG 1 cut(s) 39
Van91I CCANNNNNTGG 1 cut(s) 86
VpaK11BI GGWCC 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.