Rh7CG069800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0015920
Physical Location & Seq
Reverse (-)
5002011 .. 5002560
550 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG069800.1

Sequence Viewer

Length: 369 bp
ATGCAAAACCTTACCACAAAGCCCACAATCGTCTCAGTTCCACTAGAGCTGAAACTGCCTGACCCGACTAGCATAACCCACCCACATTTGATGGTATACAAGTTAGAAGCAGGGTGTAAAGTAGAGTCCACCTCCTGGCGCCGCTTGAGAAAATCAGAGAGGAAAACAATGGTGGTTGGGCGTTCTACGACATGGGCCTACGTCCGAATCATCTCCGGCACCATTCTCGGTGGCGTTCTCGGCTTCTACGTCATGGACCGCCTCGAGAAAAGTTACAAGGAGAAGATGAACGAGAGACTGAGGAAGTATGAAAGTGATTTGAAGAAGAAAGAGGAGAAGCTTAATGAATTTGCAGAAGAGTCTCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

14.19

Weight (kDa)

9.57

Isoelectric Point (pI)

31.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015920)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18510
fragaria_vesca FvH4_5g12630
malus_domestica MD06G1212000.v1.1 MD14G1222600.v1.1
pyrus_communis pycom14g18430
rosa_chinensis RchiOBHm_Chr7g0184711
rosa_laevigata RLG00000004957
rosa_multiflora Rmu_ssc0000289.1_g000021
rosa_roxburghii Rroxscaffold_3G00269410
rosa_rugosa Rorug06G0464600
rosa_samantha Rh7AG078300 Rh7BG069000 Rh7CG069800 Rh7DG069200
rosa_wichuraiana Rw7G005710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 138, 218
AccB7I CCANNNNNTGG 1 cut(s) 135
AccI GTMKAC 1 cut(s) 96
AciI CCGC 2 cut(s) 142, 259
AcsI RAATTY 1 cut(s) 347
AcyI GRCGYC 1 cut(s) 139
AfiI CCNNNNNNNGG 1 cut(s) 135
AgsI TTSAA 1 cut(s) 322
AjnI CCWGG 1 cut(s) 134
AluBI AGCT 2 cut(s) 49, 340
AluI AGCT 2 cut(s) 49, 340
Alw26I GTCTC 2 cut(s) 37, 289
Ama87I CYCGRG 1 cut(s) 263
AoxI GGCC 1 cut(s) 195
ApoI RAATTY 1 cut(s) 347
AspLEI GCGC 1 cut(s) 141
AspS9I GGNCC 2 cut(s) 195, 256
AvaI CYCGRG 1 cut(s) 263
AvaII GGWCC 1 cut(s) 256
BanI GGYRCC 2 cut(s) 138, 218
BccI CCATC 1 cut(s) 85
BcgI CGANNNNNNTGC 2 cut(s) 208, 242
BciT130I CCWGG 1 cut(s) 136
BcoDI GTCTC 2 cut(s) 37, 289
BfaI CTAG 3 cut(s) 44, 69, 367
BfoI RGCGCY 1 cut(s) 142
BisI GCNGC 1 cut(s) 142
BlsI GCNGC 1 cut(s) 143
Bme1390I CCNGG 1 cut(s) 136
Bme18I GGWCC 1 cut(s) 256
BmeT110I CYCGRG 1 cut(s) 263
BmgT120I GGNCC 2 cut(s) 195, 256
BmiI GGNNCC 2 cut(s) 140, 220
BmrFI CCNGG 1 cut(s) 136
BplI GAGNNNNNCTC 2 cut(s) 116, 148
BpuEI CTTGAG 1 cut(s) 166
BsaHI GRCGYC 1 cut(s) 139
Bsc4I CCNNNNNNNGG 1 cut(s) 135
BseBI CCWGG 1 cut(s) 136
BseLI CCNNNNNNNGG 1 cut(s) 135
BseMII CTCAG 2 cut(s) 48, 290
BseRI GAGGAG 1 cut(s) 347
BshFI GGCC 1 cut(s) 197
BshNI GGYRCC 2 cut(s) 138, 218
BsiHKCI CYCGRG 1 cut(s) 263
BsiSI CCGG 1 cut(s) 216
BslI CCNNNNNNNGG 1 cut(s) 135
BsmAI GTCTC 2 cut(s) 37, 289
BsmBI CGTCTC 1 cut(s) 37
BsnI GGCC 1 cut(s) 197
BsoBI CYCGRG 1 cut(s) 263
BspACI CCGC 2 cut(s) 142, 259
BspANI GGCC 1 cut(s) 197
BspCNI CTCAG 2 cut(s) 47, 291
BspLI GGNNCC 2 cut(s) 140, 220
BspT107I GGYRCC 2 cut(s) 138, 218
BssNAI GTATAC 1 cut(s) 97
BssNI GRCGYC 1 cut(s) 139
Bst1107I GTATAC 1 cut(s) 97
Bst2UI CCWGG 1 cut(s) 136
Bst6I CTCTTC 1 cut(s) 351
BstACI GRCGYC 1 cut(s) 139
BstDEI CTNAG 2 cut(s) 34, 299
BstH2I RGCGCY 1 cut(s) 142
BstHHI GCGC 1 cut(s) 141
BstMAI GTCTC 2 cut(s) 37, 289
BstMWI GCNNNNNNNGC 2 cut(s) 55, 240
BstNI CCWGG 1 cut(s) 136
BstSCI CCNGG 1 cut(s) 134
BstZ17I GTATAC 1 cut(s) 97
BsuRI GGCC 1 cut(s) 197
CfoI GCGC 1 cut(s) 141
Cfr13I GGNCC 2 cut(s) 195, 256
CviAII CATG 2 cut(s) 192, 253
CviJI RGCY 5 cut(s) 22, 49, 197, 243, 340
CviKI_1 RGCY 5 cut(s) 22, 49, 197, 243, 340
DdeI CTNAG 2 cut(s) 34, 299
DinI GGCGCC 1 cut(s) 140
Eam1104I CTCTTC 1 cut(s) 351
EarI CTCTTC 1 cut(s) 351
Eco47I GGWCC 1 cut(s) 256
Eco88I CYCGRG 1 cut(s) 263
EcoRII CCWGG 1 cut(s) 134
EgeI GGCGCC 1 cut(s) 140
EheI GGCGCC 1 cut(s) 140
Esp3I CGTCTC 1 cut(s) 37
FaeI CATG 2 cut(s) 195, 256
FaiI YATR 5 cut(s) 74, 97, 193, 254, 309
FatI CATG 2 cut(s) 191, 252
FblI GTMKAC 1 cut(s) 96
Fnu4HI GCNGC 1 cut(s) 142
Fsp4HI GCNGC 1 cut(s) 142
FspBI CTAG 3 cut(s) 44, 69, 367
GlaI GCGC 1 cut(s) 140
GluI GCNGC 1 cut(s) 142
HaeII RGCGCY 1 cut(s) 142
HaeIII GGCC 1 cut(s) 197
HapII CCGG 1 cut(s) 216
HhaI GCGC 1 cut(s) 141
Hin1I GRCGYC 1 cut(s) 139
Hin1II CATG 2 cut(s) 195, 256
Hin6I GCGC 1 cut(s) 139
HinP1I GCGC 1 cut(s) 139
HindIII AAGCTT 1 cut(s) 338
HinfI GANTC 3 cut(s) 125, 207, 359
HpaII CCGG 1 cut(s) 216
Hpy166II GTNNAC 2 cut(s) 97, 129
Hpy188I TCNGA 2 cut(s) 157, 206
Hpy188III TCNNGA 1 cut(s) 265
Hpy8I GTNNAC 2 cut(s) 97, 129
HpyCH4IV ACGT 2 cut(s) 201, 249
HpyCH4V TGCA 2 cut(s) 4, 353
HpyF10VI GCNNNNNNNGC 2 cut(s) 55, 240
HpyF3I CTNAG 2 cut(s) 34, 299
HpySE526I ACGT 2 cut(s) 201, 249
Hsp92I GRCGYC 1 cut(s) 139
Hsp92II CATG 2 cut(s) 195, 256
HspAI GCGC 1 cut(s) 139
KasI GGCGCC 1 cut(s) 138
LpnPI CCDG 5 cut(s) 72, 96, 121, 148, 229
MaeI CTAG 3 cut(s) 44, 69, 367
MaeII ACGT 2 cut(s) 201, 249
MaeIII GTNAC 1 cut(s) 272
MboII GAAGA 4 cut(s) 295, 334, 337, 368
MluCI AATT 1 cut(s) 347
Mly113I GGCGCC 1 cut(s) 139
MlyI GAGTC 2 cut(s) 134, 368
MnlI CCTC 5 cut(s) 142, 153, 272, 294, 325
MseI TTAA 1 cut(s) 342
MspI CCGG 1 cut(s) 216
MspR9I CCNGG 1 cut(s) 136
MvaI CCWGG 1 cut(s) 136
MwoI GCNNNNNNNGC 2 cut(s) 55, 240
NarI GGCGCC 1 cut(s) 139
NlaIII CATG 2 cut(s) 195, 256
NlaIV GGNNCC 2 cut(s) 140, 220
NmeAIII GCCGAG 1 cut(s) 219
PaeR7I CTCGAG 1 cut(s) 263
PcsI WCGNNNNNNNCGW 1 cut(s) 246
PfeI GAWTC 1 cut(s) 207
PflMI CCANNNNNTGG 1 cut(s) 135
PkrI GCNGC 1 cut(s) 143
PleI GAGTC 2 cut(s) 133, 367
PluTI GGCGCC 1 cut(s) 142
PpsI GAGTC 2 cut(s) 133, 367
Psp6I CCWGG 1 cut(s) 134
PspGI CCWGG 1 cut(s) 134
PspN4I GGNNCC 2 cut(s) 140, 220
PspPI GGNCC 2 cut(s) 195, 256
SaqAI TTAA 1 cut(s) 342
SatI GCNGC 1 cut(s) 142
Sau96I GGNCC 2 cut(s) 195, 256
SchI GAGTC 2 cut(s) 134, 368
ScrFI CCNGG 1 cut(s) 136
SetI ASST 6 cut(s) 12, 51, 134, 204, 252, 342
SfoI GGCGCC 1 cut(s) 140
Sfr274I CTCGAG 1 cut(s) 263
SinI GGWCC 1 cut(s) 256
SlaI CTCGAG 1 cut(s) 263
SmlI CTYRAG 2 cut(s) 145, 263
SmoI CTYRAG 2 cut(s) 145, 263
Sse9I AATT 1 cut(s) 347
SsiI CCGC 2 cut(s) 142, 259
SspDI GGCGCC 1 cut(s) 138
SspMI CTAG 3 cut(s) 44, 69, 367
StyD4I CCNGG 1 cut(s) 134
TaiI ACGT 2 cut(s) 204, 252
TaqI TCGA 1 cut(s) 264
TasI AATT 1 cut(s) 347
TauI GCSGC 1 cut(s) 144
TfiI GAWTC 1 cut(s) 207
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TspDTI ATGAA 3 cut(s) 302, 324, 360
Van91I CCANNNNNTGG 1 cut(s) 135
VpaK11BI GGWCC 1 cut(s) 256
XapI RAATTY 1 cut(s) 347
XhoI CTCGAG 1 cut(s) 263
XmiI GTMKAC 1 cut(s) 96
XspI CTAG 3 cut(s) 44, 69, 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.