FvH4_5g12640

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0015156
Physical Location & Seq
Forward (+)
7128566 .. 7133276
4711 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g12640.t1

Sequence Viewer

Length: 657 bp
ATGGAGGATCCGGGAGCCATCTTGTGCCAAATCTCATACCTGAAGGACATGCTTGACCAGGTGAACGAAGAAATCGAGGCGAACATTCAGATAACGCGGGAGATCGAGTCGGAGATCGTGAAATGCTCGGAATTCGAGTCCGCTTTGGCGGCGAAAGAGTCCGATCTCACCAGGACGCTCTACGTTTCGCAGTTTGAGCTCATCGGATTGGTCACCGTCACCAATGAATTAAGGAGGTCTGTGGAAAATTTGGAGAGGGAATTAGATGGAGTGAGATTGAAACGGGAGGAGATTCTTGAGAGAATCAGCGAAAATCGGGAAAGGTTTGTGGCATTGTGCATGGAATTTCAGGAGGACATTGATGATAAGGGTAGTGACAATGTACTGAGAGCTCTGCTGTCTGAGAAGGAGTACCTTCAGAATGAAATGCTTATATTGGATGAGAAGAACAATGCTTTGAAGAACTCAATGATGGCGTTTATTGAGGGGATTCTTGAAGATCTTAACAGTGGAAACTCTGCTTTACAGATTGAGATACAGAAGGGGAATCAGGAGAATGAGAAATTGCTGAAGGATATTAATAACATGAAAACTTCATGGCTCTCAAATTTTTCATATGATGATATCAGTGGAGCAGGATCGTGGACCTTACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

219

Amino Acids

25.01

Weight (kDa)

4.35

Isoelectric Point (pI)

48.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015156)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61415 AT1G61415 AT1G61450
fragaria_vesca FvH4_5g12640 FvH4_5g12640 FvH4_5g12640
malus_domestica MD14G1222400.v1.1
prunus_persica Prupe.5G218000_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0184691
rosa_laevigata RLG00000004959
rosa_multiflora Rmu_ssc0000289.1_g000023
rosa_samantha Rh7AG078500 Rh7BG068800 Rh7CG069600 Rh7DG069000
rosa_wichuraiana Rw7G005690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 97
AciI CCGC 3 cut(s) 97, 141, 149
AclWI GGATC 3 cut(s) 2, 15, 646
AcsI RAATTY 4 cut(s) 131, 247, 344, 607
AcuI CTGAAG 3 cut(s) 62, 401, 590
AfaI GTAC 2 cut(s) 384, 413
AgsI TTSAA 3 cut(s) 280, 460, 497
AjnI CCWGG 2 cut(s) 57, 170
AluBI AGCT 2 cut(s) 199, 392
AluI AGCT 2 cut(s) 199, 392
Alw21I GWGCWC 2 cut(s) 201, 394
AlwI GGATC 3 cut(s) 2, 15, 646
ApoI RAATTY 4 cut(s) 131, 247, 344, 607
AseI ATTAAT 1 cut(s) 579
AspS9I GGNCC 1 cut(s) 645
AsuC2I CCSGG 1 cut(s) 12
AsuHPI GGTGA 4 cut(s) 73, 160, 205, 211
AvaII GGWCC 1 cut(s) 645
BamHI GGATCC 1 cut(s) 7
BanII GRGCYC 2 cut(s) 201, 394
Bbv12I GWGCWC 2 cut(s) 201, 394
BccI CCATC 3 cut(s) 26, 260, 466
BciT130I CCWGG 2 cut(s) 59, 172
BcnI CCSGG 1 cut(s) 12
BglII AGATCT 1 cut(s) 499
BisI GCNGC 1 cut(s) 150
BlsI GCNGC 1 cut(s) 151
Bme1390I CCNGG 3 cut(s) 12, 59, 172
Bme18I GGWCC 1 cut(s) 645
BmgT120I GGNCC 1 cut(s) 645
BmiI GGNNCC 2 cut(s) 9, 16
BmrFI CCNGG 3 cut(s) 12, 59, 172
BpuEI CTTGAG 1 cut(s) 317
BpuMI CCSGG 1 cut(s) 12
BsaXI ACNNNNNCTCC 2 cut(s) 92, 122
BseBI CCWGG 2 cut(s) 59, 172
BseGI GGATG 1 cut(s) 445
BseMII CTCAG 2 cut(s) 377, 393
BseRI GAGGAG 1 cut(s) 302
Bsh1236I CGCG 1 cut(s) 97
BsiHKAI GWGCWC 2 cut(s) 201, 394
BsiSI CCGG 1 cut(s) 11
Bsp1286I GDGCHC 2 cut(s) 201, 394
Bsp143I GATC 6 cut(s) 7, 102, 114, 163, 499, 638
BspACI CCGC 3 cut(s) 97, 141, 149
BspCNI CTCAG 2 cut(s) 378, 394
BspFNI CGCG 1 cut(s) 97
BspLI GGNNCC 2 cut(s) 9, 16
BspPI GGATC 3 cut(s) 2, 15, 646
BssMI GATC 6 cut(s) 7, 102, 114, 163, 499, 638
Bst2UI CCWGG 2 cut(s) 59, 172
Bst4CI ACNGT 3 cut(s) 217, 509, 654
BstDEI CTNAG 2 cut(s) 386, 402
BstEII GGTNACC 1 cut(s) 211
BstF5I GGATG 1 cut(s) 445
BstFNI CGCG 1 cut(s) 97
BstKTI GATC 6 cut(s) 10, 105, 117, 166, 502, 641
BstMBI GATC 6 cut(s) 7, 102, 114, 163, 499, 638
BstMWI GCNNNNNNNGC 2 cut(s) 149, 196
BstNI CCWGG 2 cut(s) 59, 172
BstNSI RCATGY 1 cut(s) 52
BstPI GGTNACC 1 cut(s) 211
BstSCI CCNGG 3 cut(s) 10, 57, 170
BstUI CGCG 1 cut(s) 97
BstX2I RGATCY 2 cut(s) 7, 499
BstYI RGATCY 2 cut(s) 7, 499
BtsCI GGATG 1 cut(s) 445
BtsIMutI CAGTG 2 cut(s) 514, 634
Cfr13I GGNCC 1 cut(s) 645
CseI GACGC 1 cut(s) 184
CsiI ACCWGGT 1 cut(s) 57
Csp6I GTAC 2 cut(s) 383, 412
CviAII CATG 4 cut(s) 49, 340, 586, 597
CviJI RGCY 4 cut(s) 17, 199, 392, 601
CviKI_1 RGCY 4 cut(s) 17, 199, 392, 601
CviQI GTAC 2 cut(s) 383, 412
DdeI CTNAG 2 cut(s) 386, 402
DpnI GATC 6 cut(s) 9, 104, 116, 165, 501, 640
DpnII GATC 6 cut(s) 7, 102, 114, 163, 499, 638
Ecl136II GAGCTC 2 cut(s) 199, 392
Eco24I GRGCYC 2 cut(s) 201, 394
Eco32I GATATC 1 cut(s) 625
Eco47I GGWCC 1 cut(s) 645
Eco53kI GAGCTC 2 cut(s) 199, 392
Eco57I CTGAAG 3 cut(s) 62, 401, 590
Eco91I GGTNACC 1 cut(s) 211
EcoICRI GAGCTC 2 cut(s) 199, 392
EcoO65I GGTNACC 1 cut(s) 211
EcoRI GAATTC 1 cut(s) 131
EcoRII CCWGG 2 cut(s) 57, 170
EcoRV GATATC 1 cut(s) 625
EcoT38I GRGCYC 2 cut(s) 201, 394
FaeI CATG 4 cut(s) 52, 343, 589, 600
FaiI YATR 8 cut(s) 37, 50, 341, 434, 587, 598, 616, 618
FatI CATG 4 cut(s) 48, 339, 585, 596
FauI CCCGC 1 cut(s) 90
FauNDI CATATG 1 cut(s) 616
Fnu4HI GCNGC 1 cut(s) 150
FokI GGATG 1 cut(s) 452
FriOI GRGCYC 2 cut(s) 201, 394
Fsp4HI GCNGC 1 cut(s) 150
GluI GCNGC 1 cut(s) 150
HapII CCGG 1 cut(s) 11
HgaI GACGC 1 cut(s) 184
Hin1II CATG 4 cut(s) 52, 343, 589, 600
HinfI GANTC 7 cut(s) 107, 137, 158, 292, 303, 490, 547
HpaII CCGG 1 cut(s) 11
HphI GGTGA 4 cut(s) 73, 160, 205, 211
Hpy166II GTNNAC 2 cut(s) 64, 645
Hpy188I TCNGA 7 cut(s) 90, 112, 130, 163, 206, 403, 420
Hpy188III TCNNGA 6 cut(s) 118, 296, 317, 350, 494, 551
Hpy8I GTNNAC 2 cut(s) 64, 645
HpyAV CCTTC 5 cut(s) 37, 400, 425, 535, 565
HpyCH4III ACNGT 3 cut(s) 217, 509, 654
HpyCH4IV ACGT 1 cut(s) 183
HpyCH4V TGCA 1 cut(s) 339
HpyF10VI GCNNNNNNNGC 2 cut(s) 149, 196
HpyF3I CTNAG 2 cut(s) 386, 402
HpySE526I ACGT 1 cut(s) 183
Hsp92II CATG 4 cut(s) 52, 343, 589, 600
Kzo9I GATC 6 cut(s) 7, 102, 114, 163, 499, 638
LmnI GCTCC 2 cut(s) 14, 632
LpnPI CCDG 9 cut(s) 24, 44, 53, 71, 157, 184, 335, 536, 621
MabI ACCWGGT 1 cut(s) 57
MaeII ACGT 1 cut(s) 183
MaeIII GTNAC 3 cut(s) 211, 217, 374
MalI GATC 6 cut(s) 9, 104, 116, 165, 501, 640
MboI GATC 6 cut(s) 7, 102, 114, 163, 499, 638
MboII GAAGA 4 cut(s) 80, 457, 472, 509
MflI RGATCY 2 cut(s) 7, 499
MhlI GDGCHC 2 cut(s) 201, 394
MluCI AATT 7 cut(s) 131, 227, 247, 260, 344, 563, 607
MlyI GAGTC 3 cut(s) 116, 146, 167
MmeI TCCRAC 1 cut(s) 90
MnlI CCTC 6 cut(s) 70, 228, 249, 280, 346, 478
MseI TTAA 3 cut(s) 230, 504, 579
MspI CCGG 1 cut(s) 11
MspR9I CCNGG 3 cut(s) 12, 59, 172
MvaI CCWGG 2 cut(s) 59, 172
MvnI CGCG 1 cut(s) 97
MwoI GCNNNNNNNGC 2 cut(s) 149, 196
NciI CCSGG 1 cut(s) 12
NdeI CATATG 1 cut(s) 616
NdeII GATC 6 cut(s) 7, 102, 114, 163, 499, 638
NlaIII CATG 4 cut(s) 52, 343, 589, 600
NlaIV GGNNCC 2 cut(s) 9, 16
NmuCI GTSAC 3 cut(s) 211, 217, 374
NspI RCATGY 1 cut(s) 52
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PfeI GAWTC 4 cut(s) 292, 303, 490, 547
PfoI TCCNGGA 1 cut(s) 10
PkrI GCNGC 1 cut(s) 151
PleI GAGTC 3 cut(s) 115, 145, 166
PpsI GAGTC 3 cut(s) 115, 145, 166
PshBI ATTAAT 1 cut(s) 579
Psp124BI GAGCTC 2 cut(s) 201, 394
Psp6I CCWGG 2 cut(s) 57, 170
PspEI GGTNACC 1 cut(s) 211
PspGI CCWGG 2 cut(s) 57, 170
PspN4I GGNNCC 2 cut(s) 9, 16
PspPI GGNCC 1 cut(s) 645
PsuI RGATCY 2 cut(s) 7, 499
RsaI GTAC 2 cut(s) 384, 413
RsaNI GTAC 2 cut(s) 383, 412
SacI GAGCTC 2 cut(s) 201, 394
SaqAI TTAA 3 cut(s) 230, 504, 579
SatI GCNGC 1 cut(s) 150
Sau3AI GATC 6 cut(s) 7, 102, 114, 163, 499, 638
Sau96I GGNCC 1 cut(s) 645
SchI GAGTC 3 cut(s) 116, 146, 167
ScrFI CCNGG 3 cut(s) 12, 59, 172
SduI GDGCHC 2 cut(s) 201, 394
SetI ASST 9 cut(s) 42, 63, 186, 201, 239, 326, 394, 417, 650
SexAI ACCWGGT 1 cut(s) 57
SinI GGWCC 1 cut(s) 645
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
Sse9I AATT 7 cut(s) 131, 227, 247, 260, 344, 563, 607
SsiI CCGC 3 cut(s) 97, 141, 149
SstI GAGCTC 2 cut(s) 201, 394
StyD4I CCNGG 3 cut(s) 10, 57, 170
TaaI ACNGT 3 cut(s) 217, 509, 654
TaiI ACGT 1 cut(s) 186
TaqI TCGA 3 cut(s) 75, 105, 135
TasI AATT 7 cut(s) 131, 227, 247, 260, 344, 563, 607
TatI WGTACW 1 cut(s) 382
TauI GCSGC 1 cut(s) 152
TfiI GAWTC 4 cut(s) 292, 303, 490, 547
Tru1I TTAA 3 cut(s) 230, 504, 579
Tru9I TTAA 3 cut(s) 230, 504, 579
TscAI CASTG 2 cut(s) 514, 634
TseFI GTSAC 3 cut(s) 211, 217, 374
Tsp45I GTSAC 3 cut(s) 211, 217, 374
TspDTI ATGAA 5 cut(s) 240, 438, 585, 602, 603
TspRI CASTG 2 cut(s) 514, 634
VpaK11BI GGWCC 1 cut(s) 645
VspI ATTAAT 1 cut(s) 579
XapI RAATTY 4 cut(s) 131, 247, 344, 607
XceI RCATGY 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.