Prupe.5G218000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0015156
Physical Location & Seq
Reverse (-)
17072230 .. 17075365
3136 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G218000.1

Sequence Viewer

Length: 654 bp
ATGGAGGATTCGGGGGCGATCCTCTGTCACATCTCAACCTTGAAAGACATGCTTGACCAGGTGAACGAAGAAATCGAGTCGAATATTCAGATCACGCGAGAGATCGAATCGGAGATCGTCAAGTGCTCTGAAATCGAAAACGCTCTGGCCGCCAAAGAATCGGACCTCACCAAGACGCTATACGTCTCGCACTTTGAGCTCACTGGATTGCTCGCCGTCACCAAAGATTTAAGGAACTCGGTAGAGATTATGGAGAAGGAATTGTGTCGTCTACGAATGAAGCGCGATGAGACTCTTAATAGAATCCACGACCAGCGGGAAAGGTTTATTGCAATGTGCTTAGAATTCCAGAAGGACATGGACAAGGCGAATGATAATGAACTATGCATTCTTCTGTCAGAAAAAGAGTTCCTTGAAAATGAAATTCATATCTTGGAAGAGAAGAACAATGCTTTAAAGAATTCAATGCTGGCATTTGTTGAGGGAATTCTTGAAGATCTTATTAGTAGCAACTCTGCTTTACAAGTTGAGATACAGAGTGGGAGTCAGGAGAACGATAAACTGCTGAAGGATATTCATAATATGAAATCTTCATTGCTTTCAACTATTGCAATTGAGGATATCAGAGGTGCACGATCGTGGACTGTACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

218

Amino Acids

24.84

Weight (kDa)

4.69

Isoelectric Point (pI)

56.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015156)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61415 AT1G61415 AT1G61450
fragaria_vesca FvH4_5g12640 FvH4_5g12640 FvH4_5g12640
malus_domestica MD14G1222400.v1.1
prunus_persica Prupe.5G218000_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0184691
rosa_laevigata RLG00000004959
rosa_multiflora Rmu_ssc0000289.1_g000023
rosa_samantha Rh7AG078500 Rh7BG068800 Rh7CG069600 Rh7DG069000
rosa_wichuraiana Rw7G005690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 271
AccII CGCG 2 cut(s) 97, 285
AciI CCGC 2 cut(s) 150, 316
AclWI GGATC 1 cut(s) 13
AcoI YGGCCR 1 cut(s) 147
AcsI RAATTY 4 cut(s) 344, 423, 460, 486
AcuI CTGAAG 1 cut(s) 587
AfaI GTAC 1 cut(s) 648
AgsI TTSAA 5 cut(s) 43, 416, 465, 494, 603
AjnI CCWGG 1 cut(s) 57
AleI CACNNNNGTG 1 cut(s) 637
AluBI AGCT 1 cut(s) 199
AluI AGCT 1 cut(s) 199
Alw21I GWGCWC 3 cut(s) 128, 201, 634
Alw26I GTCTC 2 cut(s) 190, 284
Alw44I GTGCAC 1 cut(s) 630
AlwI GGATC 1 cut(s) 13
AoxI GGCC 1 cut(s) 147
ApaLI GTGCAC 1 cut(s) 630
ApoI RAATTY 4 cut(s) 344, 423, 460, 486
AspLEI GCGC 1 cut(s) 285
AspS9I GGNCC 1 cut(s) 163
AsuHPI GGTGA 3 cut(s) 73, 160, 211
AvaII GGWCC 1 cut(s) 163
BaeGI GKGCMC 1 cut(s) 634
BanII GRGCYC 1 cut(s) 201
Bbv12I GWGCWC 3 cut(s) 128, 201, 634
BceAI ACGGC 1 cut(s) 200
BciT130I CCWGG 1 cut(s) 59
BcoDI GTCTC 2 cut(s) 190, 284
BglII AGATCT 1 cut(s) 496
BisI GCNGC 1 cut(s) 150
BlsI GCNGC 1 cut(s) 151
Bme1390I CCNGG 1 cut(s) 59
Bme18I GGWCC 1 cut(s) 163
BmgT120I GGNCC 1 cut(s) 163
BmrFI CCNGG 1 cut(s) 59
Bse1I ACTGG 1 cut(s) 208
Bse3DI GCAATG 2 cut(s) 339, 593
BseBI CCWGG 1 cut(s) 59
BseMI GCAATG 2 cut(s) 339, 593
BseNI ACTGG 1 cut(s) 208
BseSI GKGCMC 1 cut(s) 634
Bsh1236I CGCG 2 cut(s) 97, 285
Bsh1285I CGRYCG 1 cut(s) 638
BshFI GGCC 1 cut(s) 149
BsiEI CGRYCG 1 cut(s) 638
BsiHKAI GWGCWC 3 cut(s) 128, 201, 634
BsmAI GTCTC 2 cut(s) 190, 284
BsmBI CGTCTC 1 cut(s) 190
BsmI GAATGC 1 cut(s) 387
BsnI GGCC 1 cut(s) 149
Bsp1286I GDGCHC 3 cut(s) 128, 201, 634
Bsp143I GATC 6 cut(s) 18, 90, 102, 114, 496, 635
BspACI CCGC 2 cut(s) 150, 316
BspANI GGCC 1 cut(s) 149
BspFNI CGCG 2 cut(s) 97, 285
BspPI GGATC 1 cut(s) 13
BsrDI GCAATG 2 cut(s) 339, 593
BsrI ACTGG 1 cut(s) 208
BssMI GATC 6 cut(s) 18, 90, 102, 114, 496, 635
Bst2UI CCWGG 1 cut(s) 59
Bst4CI ACNGT 2 cut(s) 646, 651
Bst6I CTCTTC 1 cut(s) 432
BstC8I GCNNGC 2 cut(s) 213, 471
BstDEI CTNAG 1 cut(s) 340
BstFNI CGCG 2 cut(s) 97, 285
BstHHI GCGC 1 cut(s) 285
BstKTI GATC 6 cut(s) 21, 93, 105, 117, 499, 638
BstMAI GTCTC 2 cut(s) 190, 284
BstMBI GATC 6 cut(s) 18, 90, 102, 114, 496, 635
BstMCI CGRYCG 1 cut(s) 638
BstMWI GCNNNNNNNGC 2 cut(s) 149, 196
BstNI CCWGG 1 cut(s) 59
BstNSI RCATGY 1 cut(s) 52
BstSCI CCNGG 1 cut(s) 57
BstSLI GKGCMC 1 cut(s) 634
BstUI CGCG 2 cut(s) 97, 285
BstX2I RGATCY 1 cut(s) 496
BstYI RGATCY 1 cut(s) 496
BsuRI GGCC 1 cut(s) 149
BtgZI GCGATG 1 cut(s) 300
BtsIMutI CAGTG 1 cut(s) 201
Cac8I GCNNGC 2 cut(s) 213, 471
CfoI GCGC 1 cut(s) 285
Cfr13I GGNCC 1 cut(s) 163
CseI GACGC 1 cut(s) 184
CsiI ACCWGGT 1 cut(s) 57
Csp6I GTAC 1 cut(s) 647
CviAII CATG 2 cut(s) 49, 358
CviJI RGCY 2 cut(s) 149, 199
CviKI_1 RGCY 2 cut(s) 149, 199
CviQI GTAC 1 cut(s) 647
DdeI CTNAG 1 cut(s) 340
DpnI GATC 6 cut(s) 20, 92, 104, 116, 498, 637
DpnII GATC 6 cut(s) 18, 90, 102, 114, 496, 635
DraI TTTAAA 1 cut(s) 456
EaeI YGGCCR 1 cut(s) 147
Eam1104I CTCTTC 1 cut(s) 432
EarI CTCTTC 1 cut(s) 432
Ecl136II GAGCTC 1 cut(s) 199
Eco24I GRGCYC 1 cut(s) 201
Eco32I GATATC 1 cut(s) 622
Eco47I GGWCC 1 cut(s) 163
Eco53kI GAGCTC 1 cut(s) 199
Eco57I CTGAAG 1 cut(s) 587
EcoICRI GAGCTC 1 cut(s) 199
EcoRI GAATTC 3 cut(s) 344, 460, 486
EcoRII CCWGG 1 cut(s) 57
EcoRV GATATC 1 cut(s) 622
EcoT22I ATGCAT 1 cut(s) 389
EcoT38I GRGCYC 1 cut(s) 201
Esp3I CGTCTC 1 cut(s) 190
FaeI CATG 2 cut(s) 52, 361
FaiI YATR 8 cut(s) 50, 181, 251, 359, 385, 429, 579, 584
FalI AAGNNNNNCTT 4 cut(s) 36, 68, 396, 428
FatI CATG 2 cut(s) 48, 357
FauI CCCGC 1 cut(s) 309
FblI GTMKAC 1 cut(s) 271
Fnu4HI GCNGC 1 cut(s) 150
FriOI GRGCYC 1 cut(s) 201
Fsp4HI GCNGC 1 cut(s) 150
GlaI GCGC 1 cut(s) 284
GluI GCNGC 1 cut(s) 150
HaeIII GGCC 1 cut(s) 149
HgaI GACGC 1 cut(s) 184
HhaI GCGC 1 cut(s) 285
Hin1II CATG 2 cut(s) 52, 361
Hin6I GCGC 1 cut(s) 283
HinP1I GCGC 1 cut(s) 283
HinfI GANTC 7 cut(s) 8, 77, 107, 158, 292, 303, 544
HphI GGTGA 3 cut(s) 73, 160, 211
Hpy166II GTNNAC 4 cut(s) 64, 272, 632, 642
Hpy188I TCNGA 6 cut(s) 90, 112, 130, 163, 400, 626
Hpy188III TCNNGA 3 cut(s) 349, 491, 548
Hpy8I GTNNAC 4 cut(s) 64, 272, 632, 642
HpyAV CCTTC 3 cut(s) 250, 346, 562
HpyCH4III ACNGT 2 cut(s) 646, 651
HpyCH4IV ACGT 1 cut(s) 183
HpyCH4V TGCA 4 cut(s) 332, 387, 611, 632
HpyF10VI GCNNNNNNNGC 2 cut(s) 149, 196
HpyF3I CTNAG 1 cut(s) 340
HpySE526I ACGT 1 cut(s) 183
Hsp92II CATG 2 cut(s) 52, 361
HspAI GCGC 1 cut(s) 283
Kzo9I GATC 6 cut(s) 18, 90, 102, 114, 496, 635
LpnPI CCDG 8 cut(s) 44, 71, 131, 189, 326, 362, 455, 533
MabI ACCWGGT 1 cut(s) 57
MaeII ACGT 1 cut(s) 183
MaeIII GTNAC 2 cut(s) 26, 217
MalI GATC 6 cut(s) 20, 92, 104, 116, 498, 637
MboI GATC 6 cut(s) 18, 90, 102, 114, 496, 635
MboII GAAGA 6 cut(s) 80, 383, 449, 454, 506, 582
MfeI CAATTG 1 cut(s) 612
MflI RGATCY 1 cut(s) 496
MhlI GDGCHC 3 cut(s) 128, 201, 634
MluCI AATT 6 cut(s) 260, 344, 423, 460, 486, 612
MlyI GAGTC 3 cut(s) 86, 286, 553
MnlI CCTC 5 cut(s) 32, 176, 475, 610, 620
Mph1103I ATGCAT 1 cut(s) 389
MseI TTAA 3 cut(s) 230, 297, 455
MslI CAYNNNNRTG 1 cut(s) 637
MspA1I CMGCKG 1 cut(s) 316
MspR9I CCNGG 1 cut(s) 59
MunI CAATTG 1 cut(s) 612
Mva1269I GAATGC 1 cut(s) 387
MvaI CCWGG 1 cut(s) 59
MvnI CGCG 2 cut(s) 97, 285
MwoI GCNNNNNNNGC 2 cut(s) 149, 196
NdeII GATC 6 cut(s) 18, 90, 102, 114, 496, 635
NlaIII CATG 2 cut(s) 52, 361
NmuCI GTSAC 2 cut(s) 26, 217
NsiI ATGCAT 1 cut(s) 389
NspI RCATGY 1 cut(s) 52
OliI CACNNNNGTG 1 cut(s) 637
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PctI GAATGC 1 cut(s) 387
PfeI GAWTC 4 cut(s) 8, 107, 158, 303
PkrI GCNGC 1 cut(s) 151
Ple19I CGATCG 1 cut(s) 638
PleI GAGTC 3 cut(s) 85, 286, 552
PpsI GAGTC 3 cut(s) 85, 286, 552
Psp124BI GAGCTC 1 cut(s) 201
Psp6I CCWGG 1 cut(s) 57
PspGI CCWGG 1 cut(s) 57
PspPI GGNCC 1 cut(s) 163
PsuI RGATCY 1 cut(s) 496
PvuI CGATCG 1 cut(s) 638
RsaI GTAC 1 cut(s) 648
RsaNI GTAC 1 cut(s) 647
RseI CAYNNNNRTG 1 cut(s) 637
SacI GAGCTC 1 cut(s) 201
SaqAI TTAA 3 cut(s) 230, 297, 455
SatI GCNGC 1 cut(s) 150
Sau3AI GATC 6 cut(s) 18, 90, 102, 114, 496, 635
Sau96I GGNCC 1 cut(s) 163
SchI GAGTC 3 cut(s) 86, 286, 553
ScrFI CCNGG 1 cut(s) 59
SduI GDGCHC 3 cut(s) 128, 201, 634
SetI ASST 7 cut(s) 41, 63, 168, 186, 201, 326, 631
SexAI ACCWGGT 1 cut(s) 57
SinI GGWCC 1 cut(s) 163
SmiMI CAYNNNNRTG 1 cut(s) 637
Sse9I AATT 6 cut(s) 260, 344, 423, 460, 486, 612
SsiI CCGC 2 cut(s) 150, 316
SspI AATATT 1 cut(s) 85
SstI GAGCTC 1 cut(s) 201
StyD4I CCNGG 1 cut(s) 57
TaaI ACNGT 2 cut(s) 646, 651
TaiI ACGT 1 cut(s) 186
TaqI TCGA 4 cut(s) 75, 80, 105, 135
TasI AATT 6 cut(s) 260, 344, 423, 460, 486, 612
TatI WGTACW 1 cut(s) 646
TauI GCSGC 1 cut(s) 152
TfiI GAWTC 4 cut(s) 8, 107, 158, 303
Tru1I TTAA 3 cut(s) 230, 297, 455
Tru9I TTAA 3 cut(s) 230, 297, 455
TscAI CASTG 1 cut(s) 208
TseFI GTSAC 2 cut(s) 26, 217
Tsp45I GTSAC 2 cut(s) 26, 217
TspDTI ATGAA 7 cut(s) 293, 393, 416, 435, 566, 582, 599
TspRI CASTG 1 cut(s) 208
VneI GTGCAC 1 cut(s) 630
VpaK11BI GGWCC 1 cut(s) 163
XapI RAATTY 4 cut(s) 344, 423, 460, 486
XceI RCATGY 1 cut(s) 52
XmiI GTMKAC 1 cut(s) 271
Zsp2I ATGCAT 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.