Rh7CG069600

Histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0015156
Physical Location & Seq
Reverse (-)
4983649 .. 4995605
11957 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG069600.1

Sequence Viewer

Length: 2520 bp
ATGGAGGATTCGGGAGCGATCCTGTGCCAAATCTCATCCTTGAAGGACATGCTTGACCAGGTGAACGAAGAAATTGAAGCGAATATTCAGATAACGCGGGAGATCGAGTCGGAGATCGTGAAATGCTCGGAATTCGAGAGCGCTCTGGCGGCGAAAGAATCCGACCTCACCAAGACGCTCTACGTTTCTCAGTTTGAGCTCATCGGACTGGTCACCGTCACCGATGATTTAAGAAGCTCTGTAGAAAATTTGGGGAAGGAATTAGATGGAATGAGATTGAAGCGGGACGAGACTCTTGAGAGAATCCACGGAAATCGGGAAAGGTTTATGGCATTGTGCATGGAATTCCAGAAGGACATTGATAAGGGTAGTGAGAATGTACTAAGGGCTCTGCTGTCAGAGAAAGAGTGCCTTCAAAATGAAATGCTTATGTTGGATGAGAAGAACAATGCTTTGAAGAACTCAATGATGGCGTTTGTTGAGGGGATTCTTGAAGATCTCAACAGTGGAAACTCTGCTTTACAGGTTGAAATACAGAAGGCTAATCAGGAGAACGAGAAATTGCTGGAGGATATTGATAACATGAAAACTTCATTGCTGTCAAATTTTGCATTTGATGATATCAGTGGAGCAGGATCGTGGACTTTACAGCCAATAAAGAATGCGACAGTACAGATGAGAATCAGGGAAGATGTTCGCATATTGATCTCTTTTTCTGTGGGTCTGATCACATCTGGCAGGCCCCTCAAACCAGACCTGCAGATCATACCCACCCTTTGTCCTCTACCAGGAATGATTGTGGCTGAAAATCTCCTTGCAAGCACTGAACAGAACTTGATATTGGAAACACTTCAAATGACTCGTTTAGCTAATGGGGAGGCGGAGATAAGTCATCACAAATCAAACAATGAAATCTTCGGAAAAGATGCATCGACAGATGATGTGAATGGAAACACGCTGCCTGATGTTTCAAGTAAAAAGGCAGGACAGCAAAAAGAAATGACTTTCCAAGATGTGTACGACCAAGACCTCGATGACGAGGATGATGACAGTGATTGGGAGCCCCTGCAAAAGAATGTTGAACTTGTGAAGTGGTTCTGCACCAACTGCACAATGGTCAACCTTGGGGATGTCAATTGTGATATATGTGGGGAACATAGAGAATCTGGAATTCTTAGGCATGGGTTTTTGGCATCTCCCCTGTTACAGGATTCAGGCCTAACTGAAATTGATTCTGACATTAGGGAAAGACACAAAGACACAGGGTCACAAGATTCAGCGTCTAACAGTTCTACTGCTGTGGGTTTTGATGAGAGAATGTTGCTACATTCAGAAATTCAATTGACGTCGCATCCACACCCAGAAAGACCTGACCGTATTCGAGCTATTGCTGCTAGCCTTGCTACAGCTGGTATCTTTCCAGGACGATGTTATCCAATTCCCGCTAGAGAAATCACGCGTGAAGAACTTCAGATGGTCCATTCTTTGGAGCATGTTGAAGCTGTTGATCTTACAGGCCATATGTTTTCTAGTTATTTCACCCCTGACACATATGCCAATGAACATTCAGCACGCGCTGCTAGGCTTGCAGCAGGTTTATGTGCTGATCTTGCTTCAGCAATTGTTTCTGGACGTACAAAAAATGGTTTTGCTCTGGTTCGTCCTCCTGGTCATCATGCTGGTATAAAGCAGGCTATGGGGTTTTGCCTCCACAATAATGCAGCAGTTGCTGCATTAGCAGCTCAAGTTTCTGGGGCTAAGAAAGTGCTAATTGTTGATTGGGATGTTCATCATGGGAATGGCACCCAGGAAATATTTGAACAGAACAAATCAGTCCTGTATATATCCTTACATAGACATGAGGGGGGAAAGTTCTATCCTGGTACTGGAGCCGCTGATGAGGTTGGTACCATGGGAGCTGAAGGATACTGTGTGAATGTTCCATGGAGTCGTGGTGGAGTGGGTGATAATGACTATGTTTTCGCATTTCAGCATGTTGTGCTTCCTATAGCTTCTGCATTTGCTCCCGATTTCACCATCATATCAGCAGGATTTGATGCAGCGAGGGGTGATCCTCTAGGATGCTGTGATGTTACTCCTGCCGGCTATGCAAAGATGACTGACATGTTGACTGACTTGTGTGGAGGGAAGTTGTTAGTCATTCTTGAGGGCGGGTACAATCTACGTTCAATATCATCTTCTGCTACTTCAGTAATTAAGGTTTTACTAGGTGAAAGTCCAGGATGTGAATTGGACAACACTTCACCTTCCAGATCTGGACTGCAAACTGTTCTAGAGGTCCTTAAAATTCAAAGTAACTACTGGCCTGTTTTGGCATCCAACTTTTCGAAATTGCAGTCACAAGCGAGAATGCACTCTATTGAAAACAAAAGAAAACAAATAGAAAAGAAACGGAGGGCTGTGACTCCAATGTGGTGGAAATGGGGACGGAAGGGTCTATTGTATCATTTTTTAAATGGGCAAAATCGGCATGCCCATGTGAAGCGAAAGGGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05165 ko05203 map05034 map05165 map05203
Pfam Domains
Protein Families
Hist_deacetyl

Protein Analysis

839

Amino Acids

92.51

Weight (kDa)

5.19

Isoelectric Point (pI)

39.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hist_deacetyl PF00850 453 - 742 1.7e-92 Histone deacetylase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015156)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61415 AT1G61415 AT1G61450
fragaria_vesca FvH4_5g12640 FvH4_5g12640 FvH4_5g12640
malus_domestica MD14G1222400.v1.1
prunus_persica Prupe.5G218000_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0184691
rosa_laevigata RLG00000004959
rosa_multiflora Rmu_ssc0000289.1_g000023
rosa_samantha Rh7AG078500 Rh7BG068800 Rh7CG069600 Rh7DG069000
rosa_wichuraiana Rw7G005690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2454
AatII GACGTC 1 cut(s) 1349
Acc36I ACCTGC 2 cut(s) 765, 1583
Acc65I GGTACC 1 cut(s) 1907
AccB1I GGYRCC 2 cut(s) 1802, 1907
AccB7I CCANNNNNTGG 1 cut(s) 1486
AccII CGCG 3 cut(s) 97, 1459, 1575
AciI CCGC 7 cut(s) 97, 149, 283, 881, 1443, 1893, 2172
AclWI GGATC 3 cut(s) 13, 643, 2066
AcsI RAATTY 7 cut(s) 131, 247, 344, 604, 1170, 1335, 2307
AcuI CTGAAG 4 cut(s) 1454, 1599, 1941, 2193
AcyI GRCGYC 1 cut(s) 1346
AfaI GTAC 7 cut(s) 381, 672, 1019, 1636, 1885, 1909, 2177
AfeI AGCGCT 1 cut(s) 142
AfiI CCNNNNNNNGG 4 cut(s) 788, 1207, 1486, 1886
AflIII ACRYGT 2 cut(s) 1457, 2124
AhdI GACNNNNNGTC 1 cut(s) 1264
AjnI CCWGG 7 cut(s) 57, 787, 1420, 1666, 1806, 1879, 2239
AjuI GAANNNNNNNTTGG 2 cut(s) 824, 856
AluBI AGCT 9 cut(s) 199, 237, 869, 1385, 1409, 1502, 1742, 1919, 2012
AluI AGCT 9 cut(s) 199, 237, 869, 1385, 1409, 1502, 1742, 1919, 2012
Alw21I GWGCWC 1 cut(s) 201
Alw26I GTCTC 1 cut(s) 284
AlwI GGATC 3 cut(s) 13, 643, 2066
AlwNI CAGNNNCTG 1 cut(s) 1730
Aor51HI AGCGCT 1 cut(s) 142
AoxI GGCC 4 cut(s) 740, 1216, 1516, 2324
ApeKI GCWGC 8 cut(s) 958, 1391, 1577, 1589, 1721, 1730, 1739, 2060
ApoI RAATTY 7 cut(s) 131, 247, 344, 604, 1170, 1335, 2307
ArsI GACNNNNNNTTYG 4 cut(s) 1964, 1996, 2342, 2374
Asp700I GAANNNNTTC 4 cut(s) 693, 849, 1094, 1467
Asp718I GGTACC 1 cut(s) 1907
AspLEI GCGC 2 cut(s) 143, 1577
AspS9I GGNCC 3 cut(s) 741, 1477, 2299
AsuII TTCGAA 1 cut(s) 2348
AsuNHI GCTAGC 1 cut(s) 1394
AvaII GGWCC 2 cut(s) 1477, 2299
BanI GGYRCC 2 cut(s) 1802, 1907
BanII GRGCYC 3 cut(s) 201, 391, 1065
Bbv12I GWGCWC 1 cut(s) 201
BbvI GCAGC 8 cut(s) 945, 1378, 1564, 1601, 1717, 1733, 1751, 2072
BccI CCATC 4 cut(s) 260, 463, 1468, 2045
BciT130I CCWGG 7 cut(s) 59, 789, 1422, 1668, 1808, 1881, 2241
BciVI GTATCC 1 cut(s) 1919
BclI TGATCA 1 cut(s) 726
BcoDI GTCTC 1 cut(s) 284
BfaI CTAG 7 cut(s) 1395, 1446, 1530, 1581, 2078, 2228, 2294
BfmI CTRYAG 4 cut(s) 240, 758, 1404, 2007
BfoI RGCGCY 1 cut(s) 144
BfuAI ACCTGC 2 cut(s) 765, 1583
BfuI GTATCC 1 cut(s) 1919
BglII AGATCT 2 cut(s) 496, 2273
Bme1390I CCNGG 7 cut(s) 59, 789, 1422, 1668, 1808, 1881, 2241
Bme18I GGWCC 2 cut(s) 1477, 2299
BmeRI GACNNNNNGTC 1 cut(s) 1264
BmgT120I GGNCC 3 cut(s) 741, 1477, 2299
BmiI GGNNCC 5 cut(s) 743, 1062, 1804, 1891, 1909
BmrFI CCNGG 7 cut(s) 59, 789, 1422, 1668, 1808, 1881, 2241
BmsI GCATC 7 cut(s) 916, 938, 1202, 1360, 2047, 2072, 2345
BmtI GCTAGC 1 cut(s) 1398
BpmI CTGGAG 2 cut(s) 587, 1908
Bpu14I TTCGAA 1 cut(s) 2348
BpuEI CTTGAG 3 cut(s) 317, 1728, 2186
BsaBI GATNNNNATC 2 cut(s) 680, 1788
BsaHI GRCGYC 1 cut(s) 1346
BsaJI CCNNGG 5 cut(s) 307, 1123, 1806, 1911, 1943
BsaXI ACNNNNNCTCC 4 cut(s) 92, 122, 1939, 1969
Bsc4I CCNNNNNNNGG 4 cut(s) 788, 1207, 1486, 1886
Bse118I RCCGGY 1 cut(s) 2102
Bse1I ACTGG 3 cut(s) 213, 1891, 2327
Bse3DI GCAATG 1 cut(s) 593
Bse8I GATNNNNATC 2 cut(s) 680, 1788
BseBI CCWGG 7 cut(s) 59, 789, 1422, 1668, 1808, 1881, 2241
BseDI CCNNGG 5 cut(s) 307, 1123, 1806, 1911, 1943
BseGI GGATG 9 cut(s) 35, 442, 1048, 1135, 1351, 1789, 2087, 2249, 2336
BseJI GATNNNNATC 2 cut(s) 680, 1788
BseLI CCNNNNNNNGG 4 cut(s) 788, 1207, 1486, 1886
BseMI GCAATG 1 cut(s) 593
BseMII CTCAG 1 cut(s) 203
BseNI ACTGG 3 cut(s) 213, 1891, 2327
BseXI GCAGC 8 cut(s) 945, 1378, 1564, 1601, 1717, 1733, 1751, 2072
BsgI GTGCAG 2 cut(s) 1084, 1093
Bsh1236I CGCG 3 cut(s) 97, 1459, 1575
BshFI GGCC 4 cut(s) 742, 1218, 1518, 2326
BshNI GGYRCC 2 cut(s) 1802, 1907
BsiHKAI GWGCWC 1 cut(s) 201
BsiSI CCGG 1 cut(s) 2103
BslFI GGGAC 2 cut(s) 299, 2460
BslI CCNNNNNNNGG 4 cut(s) 788, 1207, 1486, 1886
BsmAI GTCTC 1 cut(s) 284
BsmFI GGGAC 2 cut(s) 299, 2460
BsmI GAATGC 2 cut(s) 667, 2376
BsnI GGCC 4 cut(s) 742, 1218, 1518, 2326
Bsp119I TTCGAA 1 cut(s) 2348
Bsp1286I GDGCHC 3 cut(s) 201, 391, 1065
Bsp19I CCATGG 2 cut(s) 1911, 1943
BspACI CCGC 7 cut(s) 97, 149, 283, 881, 1443, 1893, 2172
BspANI GGCC 4 cut(s) 742, 1218, 1518, 2326
BspCNI CTCAG 1 cut(s) 202
BspFNI CGCG 3 cut(s) 97, 1459, 1575
BspLI GGNNCC 5 cut(s) 743, 1062, 1804, 1891, 1909
BspMAI CTGCAG 1 cut(s) 762
BspMI ACCTGC 2 cut(s) 765, 1583
BspOI GCTAGC 1 cut(s) 1398
BspPI GGATC 3 cut(s) 13, 643, 2066
BspT104I TTCGAA 1 cut(s) 2348
BspT107I GGYRCC 2 cut(s) 1802, 1907
BsrDI GCAATG 1 cut(s) 593
BsrFI RCCGGY 1 cut(s) 2102
BsrI ACTGG 3 cut(s) 213, 1891, 2327
BssAI RCCGGY 1 cut(s) 2102
BssECI CCNNGG 5 cut(s) 307, 1123, 1806, 1911, 1943
BssNI GRCGYC 1 cut(s) 1346
BssT1I CCWWGG 3 cut(s) 1123, 1911, 1943
Bst2UI CCWGG 7 cut(s) 59, 789, 1422, 1668, 1808, 1881, 2241
Bst4CI ACNGT 8 cut(s) 217, 506, 670, 1052, 1289, 1376, 1931, 2290
BstACI GRCGYC 1 cut(s) 1346
BstAPI GCANNNNNTGC 5 cut(s) 1107, 1577, 1727, 1730, 1999
BstBI TTCGAA 1 cut(s) 2348
BstC8I GCNNGC 8 cut(s) 740, 820, 1396, 1573, 1587, 1692, 2104, 2493
BstDEI CTNAG 4 cut(s) 189, 383, 1175, 1758
BstDSI CCRYGG 3 cut(s) 307, 1911, 1943
BstEII GGTNACC 1 cut(s) 211
BstENI CCTNNNNNAGG 2 cut(s) 786, 1205
BstF5I GGATG 9 cut(s) 35, 442, 1048, 1135, 1351, 1789, 2087, 2249, 2336
BstFNI CGCG 3 cut(s) 97, 1459, 1575
BstH2I RGCGCY 1 cut(s) 144
BstHHI GCGC 2 cut(s) 143, 1577
BstMAI GTCTC 1 cut(s) 284
BstNI CCWGG 7 cut(s) 59, 789, 1422, 1668, 1808, 1881, 2241
BstNSI RCATGY 5 cut(s) 52, 1496, 1997, 2128, 2495
BstPI GGTNACC 1 cut(s) 211
BstSCI CCNGG 7 cut(s) 57, 787, 1420, 1666, 1806, 1879, 2239
BstSFI CTRYAG 4 cut(s) 240, 758, 1404, 2007
BstUI CGCG 3 cut(s) 97, 1459, 1575
BstV1I GCAGC 8 cut(s) 945, 1378, 1564, 1601, 1717, 1733, 1751, 2072
BstX2I RGATCY 2 cut(s) 496, 2273
BstXI CCANNNNNNTGG 1 cut(s) 2436
BstYI RGATCY 2 cut(s) 496, 2273
BsuI GTATCC 1 cut(s) 1919
BsuRI GGCC 4 cut(s) 742, 1218, 1518, 2326
BtgI CCRYGG 3 cut(s) 307, 1911, 1943
BtsCI GGATG 9 cut(s) 35, 442, 1048, 1135, 1351, 1789, 2087, 2249, 2336
BtsIMutI CAGTG 4 cut(s) 511, 631, 822, 1057
BveI ACCTGC 2 cut(s) 765, 1583
Cac8I GCNNGC 8 cut(s) 740, 820, 1396, 1573, 1587, 1692, 2104, 2493
CaiI CAGNNNCTG 1 cut(s) 1730
CfoI GCGC 2 cut(s) 143, 1577
Cfr10I RCCGGY 1 cut(s) 2102
Cfr13I GGNCC 3 cut(s) 741, 1477, 2299
CseI GACGC 2 cut(s) 184, 1269
CsiI ACCWGGT 1 cut(s) 57
Csp6I GTAC 7 cut(s) 380, 671, 1018, 1635, 1884, 1908, 2176
CviQI GTAC 7 cut(s) 380, 671, 1018, 1635, 1884, 1908, 2176
DdeI CTNAG 4 cut(s) 189, 383, 1175, 1758
DraI TTTAAA 1 cut(s) 2475
DrdI GACNNNNNNGTC 1 cut(s) 2454
DriI GACNNNNNGTC 1 cut(s) 1264
DseDI GACNNNNNNGTC 1 cut(s) 2454
Eam1105I GACNNNNNGTC 1 cut(s) 1264
EciI GGCGGA 1 cut(s) 896
Ecl136II GAGCTC 1 cut(s) 199
Eco130I CCWWGG 3 cut(s) 1123, 1911, 1943
Eco147I AGGCCT 1 cut(s) 1218
Eco24I GRGCYC 3 cut(s) 201, 391, 1065
Eco32I GATATC 1 cut(s) 622
Eco47I GGWCC 2 cut(s) 1477, 2299
Eco47III AGCGCT 1 cut(s) 142
Eco53kI GAGCTC 1 cut(s) 199
Eco57I CTGAAG 4 cut(s) 1454, 1599, 1941, 2193
Eco91I GGTNACC 1 cut(s) 211
EcoICRI GAGCTC 1 cut(s) 199
EcoNI CCTNNNNNAGG 2 cut(s) 786, 1205
EcoO109I RGGNCCY 2 cut(s) 741, 2299
EcoO65I GGTNACC 1 cut(s) 211
EcoRI GAATTC 3 cut(s) 131, 344, 1170
EcoRII CCWGG 7 cut(s) 57, 787, 1420, 1666, 1806, 1879, 2239
EcoRV GATATC 1 cut(s) 622
EcoT14I CCWWGG 3 cut(s) 1123, 1911, 1943
EcoT22I ATGCAT 1 cut(s) 931
EcoT38I GRGCYC 3 cut(s) 201, 391, 1065
ErhI CCWWGG 3 cut(s) 1123, 1911, 1943
FalI AAGNNNNNCTT 2 cut(s) 396, 428
FaqI GGGAC 2 cut(s) 299, 2460
FauI CCCGC 4 cut(s) 90, 276, 1450, 2165
FauNDI CATATG 2 cut(s) 1521, 1552
FbaI TGATCA 1 cut(s) 726
FokI GGATG 9 cut(s) 22, 449, 1055, 1142, 1338, 1796, 2094, 2256, 2323
FriOI GRGCYC 3 cut(s) 201, 391, 1065
FspBI CTAG 7 cut(s) 1395, 1446, 1530, 1581, 2078, 2228, 2294
GlaI GCGC 2 cut(s) 142, 1576
GsuI CTGGAG 2 cut(s) 587, 1908
HaeII RGCGCY 1 cut(s) 144
HaeIII GGCC 4 cut(s) 742, 1218, 1518, 2326
HapII CCGG 1 cut(s) 2103
HgaI GACGC 2 cut(s) 184, 1269
HhaI GCGC 2 cut(s) 143, 1577
Hin1I GRCGYC 1 cut(s) 1346
Hin6I GCGC 2 cut(s) 141, 1575
HinP1I GCGC 2 cut(s) 141, 1575
HincII GTYRAC 2 cut(s) 1120, 2130
HindII GTYRAC 2 cut(s) 1120, 2130
HpaII CCGG 1 cut(s) 2103
Hpy166II GTNNAC 5 cut(s) 64, 642, 1018, 1120, 2130
Hpy8I GTNNAC 5 cut(s) 64, 642, 1018, 1120, 2130
Hpy99I CGWCG 1 cut(s) 1351
HpyAV CCTTC 8 cut(s) 37, 250, 346, 422, 532, 1916, 2277, 2446
HpyCH4III ACNGT 8 cut(s) 217, 506, 670, 1052, 1289, 1376, 1931, 2290
HpyCH4IV ACGT 4 cut(s) 183, 1346, 1633, 2185
HpyF3I CTNAG 4 cut(s) 189, 383, 1175, 1758
HpySE526I ACGT 4 cut(s) 183, 1346, 1633, 2185
Hsp92I GRCGYC 1 cut(s) 1346
HspAI GCGC 2 cut(s) 141, 1575
KpnI GGTACC 1 cut(s) 1911
KroI GCCGGC 1 cut(s) 2102
KroNI GCCGGC 1 cut(s) 2104
Ksp22I TGATCA 1 cut(s) 726
LmnI GCTCC 7 cut(s) 14, 629, 1060, 1489, 1889, 1916, 2029
Lsp1109I GCAGC 8 cut(s) 945, 1378, 1564, 1601, 1717, 1733, 1751, 2072
LweI GCATC 7 cut(s) 916, 938, 1202, 1360, 2047, 2072, 2345
MabI ACCWGGT 1 cut(s) 57
MaeI CTAG 7 cut(s) 1395, 1446, 1530, 1581, 2078, 2228, 2294
MaeII ACGT 4 cut(s) 183, 1346, 1633, 2185
MaeIII GTNAC 8 cut(s) 211, 217, 1203, 1266, 2092, 2315, 2358, 2422
MboII GAAGA 8 cut(s) 80, 454, 469, 506, 701, 907, 1475, 2190
MfeI CAATTG 3 cut(s) 1135, 1340, 1620
MflI RGATCY 2 cut(s) 496, 2273
MhlI GDGCHC 3 cut(s) 201, 391, 1065
MluI ACGCGT 1 cut(s) 1457
MlyI GAGTC 5 cut(s) 116, 286, 853, 1957, 2419
MmeI TCCRAC 4 cut(s) 90, 186, 414, 2364
Mph1103I ATGCAT 1 cut(s) 931
MroNI GCCGGC 1 cut(s) 2102
MroXI GAANNNNTTC 4 cut(s) 693, 849, 1094, 1467
MseI TTAA 4 cut(s) 230, 2217, 2304, 2474
MslI CAYNNNNRTG 4 cut(s) 1716, 1797, 1857, 2496
MspA1I CMGCKG 2 cut(s) 1409, 1895
MspI CCGG 1 cut(s) 2103
MspR9I CCNGG 7 cut(s) 59, 789, 1422, 1668, 1808, 1881, 2241
MunI CAATTG 3 cut(s) 1135, 1340, 1620
Mva1269I GAATGC 2 cut(s) 667, 2376
MvaI CCWGG 7 cut(s) 59, 789, 1422, 1668, 1808, 1881, 2241
MvnI CGCG 3 cut(s) 97, 1459, 1575
NaeI GCCGGC 1 cut(s) 2104
NcoI CCATGG 2 cut(s) 1911, 1943
NdeI CATATG 2 cut(s) 1521, 1552
NgoMIV GCCGGC 1 cut(s) 2102
NheI GCTAGC 1 cut(s) 1394
NlaIV GGNNCC 5 cut(s) 743, 1062, 1804, 1891, 1909
NmuCI GTSAC 5 cut(s) 211, 217, 1266, 2358, 2422
NsiI ATGCAT 1 cut(s) 931
NspI RCATGY 5 cut(s) 52, 1496, 1997, 2128, 2495
NspV TTCGAA 1 cut(s) 2348
PaeI GCATGC 1 cut(s) 2495
PceI AGGCCT 1 cut(s) 1218
PciI ACATGT 1 cut(s) 2124
PctI GAATGC 2 cut(s) 667, 2376
PdiI GCCGGC 1 cut(s) 2104
PdmI GAANNNNTTC 4 cut(s) 693, 849, 1094, 1467
PfeI GAWTC 9 cut(s) 8, 158, 303, 487, 681, 1163, 1211, 1232, 1274
PflMI CCANNNNNTGG 1 cut(s) 1486
PfoI TCCNGGA 2 cut(s) 1420, 2239
PleI GAGTC 5 cut(s) 115, 286, 853, 1956, 2419
PpsI GAGTC 5 cut(s) 115, 286, 853, 1956, 2419
PpuMI RGGWCCY 1 cut(s) 2299
PscI ACATGT 1 cut(s) 2124
Psp124BI GAGCTC 1 cut(s) 201
Psp5II RGGWCCY 1 cut(s) 2299
Psp6I CCWGG 7 cut(s) 57, 787, 1420, 1666, 1806, 1879, 2239
PspEI GGTNACC 1 cut(s) 211
PspGI CCWGG 7 cut(s) 57, 787, 1420, 1666, 1806, 1879, 2239
PspN4I GGNNCC 5 cut(s) 743, 1062, 1804, 1891, 1909
PspPI GGNCC 3 cut(s) 741, 1477, 2299
PspPPI RGGWCCY 1 cut(s) 2299
PstI CTGCAG 1 cut(s) 762
PstNI CAGNNNCTG 1 cut(s) 1730
PsuI RGATCY 2 cut(s) 496, 2273
PvuII CAGCTG 1 cut(s) 1409
RsaI GTAC 7 cut(s) 381, 672, 1019, 1636, 1885, 1909, 2177
RsaNI GTAC 7 cut(s) 380, 671, 1018, 1635, 1884, 1908, 2176
RseI CAYNNNNRTG 4 cut(s) 1716, 1797, 1857, 2496
SacI GAGCTC 1 cut(s) 201
SaqAI TTAA 4 cut(s) 230, 2217, 2304, 2474
Sau96I GGNCC 3 cut(s) 741, 1477, 2299
SchI GAGTC 5 cut(s) 116, 286, 853, 1957, 2419
ScrFI CCNGG 7 cut(s) 59, 789, 1422, 1668, 1808, 1881, 2241
SduI GDGCHC 3 cut(s) 201, 391, 1065
SexAI ACCWGGT 1 cut(s) 57
SfaNI GCATC 7 cut(s) 916, 938, 1202, 1360, 2047, 2072, 2345
SfcI CTRYAG 4 cut(s) 240, 758, 1404, 2007
SfuI TTCGAA 1 cut(s) 2348
SinI GGWCC 2 cut(s) 1477, 2299
SmiMI CAYNNNNRTG 4 cut(s) 1716, 1797, 1857, 2496
SmlI CTYRAG 3 cut(s) 296, 1743, 2165
SmoI CTYRAG 3 cut(s) 296, 1743, 2165
SphI GCATGC 1 cut(s) 2495
SseBI AGGCCT 1 cut(s) 1218
SsiI CCGC 7 cut(s) 97, 149, 283, 881, 1443, 1893, 2172
SspI AATATT 2 cut(s) 85, 1815
SspMI CTAG 7 cut(s) 1395, 1446, 1530, 1581, 2078, 2228, 2294
SstI GAGCTC 1 cut(s) 201
StuI AGGCCT 1 cut(s) 1218
StyD4I CCNGG 7 cut(s) 57, 787, 1420, 1666, 1806, 1879, 2239
StyI CCWWGG 3 cut(s) 1123, 1911, 1943
TaaI ACNGT 8 cut(s) 217, 506, 670, 1052, 1289, 1376, 1931, 2290
TaiI ACGT 4 cut(s) 186, 1349, 1636, 2188
TaqI TCGA 6 cut(s) 105, 135, 932, 1032, 1381, 2348
TatI WGTACW 2 cut(s) 379, 670
TauI GCSGC 2 cut(s) 152, 1895
TfiI GAWTC 9 cut(s) 8, 158, 303, 487, 681, 1163, 1211, 1232, 1274
Tru1I TTAA 4 cut(s) 230, 2217, 2304, 2474
Tru9I TTAA 4 cut(s) 230, 2217, 2304, 2474
TscAI CASTG 4 cut(s) 511, 631, 829, 1057
TseFI GTSAC 5 cut(s) 211, 217, 1266, 2358, 2422
TseI GCWGC 8 cut(s) 958, 1391, 1577, 1589, 1721, 1730, 1739, 2060
Tsp45I GTSAC 5 cut(s) 211, 217, 1266, 2358, 2422
TspDTI ATGAA 6 cut(s) 435, 582, 599, 924, 1575, 1778
TspGWI ACGGA 3 cut(s) 324, 2428, 2464
TspRI CASTG 4 cut(s) 511, 631, 829, 1057
Van91I CCANNNNNTGG 1 cut(s) 1486
VpaK11BI GGWCC 2 cut(s) 1477, 2299
XagI CCTNNNNNAGG 2 cut(s) 786, 1205
XapI RAATTY 7 cut(s) 131, 247, 344, 604, 1170, 1335, 2307
XbaI TCTAGA 1 cut(s) 2293
XceI RCATGY 5 cut(s) 52, 1496, 1997, 2128, 2495
XcmI CCANNNNNNNNNTGG 1 cut(s) 1111
XmnI GAANNNNTTC 4 cut(s) 693, 849, 1094, 1467
XspI CTAG 7 cut(s) 1395, 1446, 1530, 1581, 2078, 2228, 2294
ZraI GACGTC 1 cut(s) 1347
Zsp2I ATGCAT 1 cut(s) 931
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.