RLG00000004959

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0015156
Physical Location & Seq
Forward (+)
63981006 .. 63982605
1600 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004959

Sequence Viewer

Length: 633 bp
ATGGAGGATTCGGGAGCGATCCTATGCCAAATCTCATTCTTGAAGGACATGCTTGACCAGGTGAACGAAGAAATTGAGGCGAATATTCAGATTACGAGGGAGATCGAGTCGGAGATCGTGAAATGCTCGGAATTCGAGAGCGCTCTGGCTGCGAAAGAGTCCGACCTCACCAAGACGCTCTACGTTTCGCAGTTTGAGCTCATCGGACTGGTCACCGTCACCAATGATTTAAGACGCTCTGTAGAAAATTTGGGGAAGGAATTAGATGGAATGAGATTGAAACGGGAGGAGACTCTTGAGAGAATCCACGGAAATCGGGAAAGGTTTATGGCATTGTGCATGGAATTCCAGAAGGACATTGATAAGGGTAGTGAGAATGTACTAAGGGCTCTGCTGTCAGAGAAAGAATACCTTCAAAATGAAATGCTTATGTTGGATGAGAAGAACAATGCTTTGAAGAACTCAATGGTGGCGTTTGTTGAGGGGATTCTTGAAGATCTCAACAGTGGAAACTCTGCTTTACAGGTTGAAATACAGAAGGCTAATCAGGAGAACGAGAAATTGCTGGAGGATATTGATAACATGAAAACTTCATTGCTATCAAATTTTGCATTTGATGATATCAGTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

211

Amino Acids

23.89

Weight (kDa)

4.43

Isoelectric Point (pI)

41.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015156)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61415 AT1G61415 AT1G61450
fragaria_vesca FvH4_5g12640 FvH4_5g12640 FvH4_5g12640
malus_domestica MD14G1222400.v1.1
prunus_persica Prupe.5G218000_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0184691
rosa_laevigata RLG00000004959
rosa_multiflora Rmu_ssc0000289.1_g000023
rosa_samantha Rh7AG078500 Rh7BG068800 Rh7CG069600 Rh7DG069000
rosa_wichuraiana Rw7G005690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 13
AcsI RAATTY 4 cut(s) 131, 247, 344, 604
AfaI GTAC 1 cut(s) 381
AfeI AGCGCT 1 cut(s) 142
AgsI TTSAA 6 cut(s) 43, 280, 416, 457, 494, 530
AjnI CCWGG 1 cut(s) 57
AluBI AGCT 1 cut(s) 199
AluI AGCT 1 cut(s) 199
Alw21I GWGCWC 1 cut(s) 201
Alw26I GTCTC 1 cut(s) 284
AlwI GGATC 1 cut(s) 13
Aor51HI AGCGCT 1 cut(s) 142
ApeKI GCWGC 1 cut(s) 149
ApoI RAATTY 4 cut(s) 131, 247, 344, 604
Asp700I GAANNNNTTC 1 cut(s) 411
AspLEI GCGC 1 cut(s) 143
AsuHPI GGTGA 4 cut(s) 73, 160, 205, 211
BanII GRGCYC 2 cut(s) 201, 391
Bbv12I GWGCWC 1 cut(s) 201
BbvI GCAGC 1 cut(s) 136
BccI CCATC 1 cut(s) 260
BciT130I CCWGG 1 cut(s) 59
BcoDI GTCTC 1 cut(s) 284
BfmI CTRYAG 1 cut(s) 240
BfoI RGCGCY 1 cut(s) 144
BglII AGATCT 1 cut(s) 496
BisI GCNGC 1 cut(s) 150
BlsI GCNGC 1 cut(s) 151
Bme1390I CCNGG 1 cut(s) 59
BmrFI CCNGG 1 cut(s) 59
BpmI CTGGAG 1 cut(s) 587
BpuEI CTTGAG 1 cut(s) 317
BsaJI CCNNGG 1 cut(s) 307
BsaXI ACNNNNNCTCC 2 cut(s) 92, 122
Bse1I ACTGG 1 cut(s) 213
Bse3DI GCAATG 1 cut(s) 593
BseBI CCWGG 1 cut(s) 59
BseDI CCNNGG 1 cut(s) 307
BseGI GGATG 1 cut(s) 442
BseMI GCAATG 1 cut(s) 593
BseNI ACTGG 1 cut(s) 213
BseRI GAGGAG 1 cut(s) 302
BseXI GCAGC 1 cut(s) 136
BsiHKAI GWGCWC 1 cut(s) 201
BsmAI GTCTC 1 cut(s) 284
Bsp1286I GDGCHC 2 cut(s) 201, 391
Bsp143I GATC 4 cut(s) 18, 102, 114, 496
BspPI GGATC 1 cut(s) 13
BsrDI GCAATG 1 cut(s) 593
BsrI ACTGG 1 cut(s) 213
BssECI CCNNGG 1 cut(s) 307
BssMI GATC 4 cut(s) 18, 102, 114, 496
Bst2UI CCWGG 1 cut(s) 59
Bst4CI ACNGT 2 cut(s) 217, 506
BstDEI CTNAG 1 cut(s) 383
BstDSI CCRYGG 1 cut(s) 307
BstEII GGTNACC 1 cut(s) 211
BstF5I GGATG 1 cut(s) 442
BstH2I RGCGCY 1 cut(s) 144
BstHHI GCGC 1 cut(s) 143
BstKTI GATC 4 cut(s) 21, 105, 117, 499
BstMAI GTCTC 1 cut(s) 284
BstMBI GATC 4 cut(s) 18, 102, 114, 496
BstMWI GCNNNNNNNGC 2 cut(s) 149, 196
BstNI CCWGG 1 cut(s) 59
BstNSI RCATGY 1 cut(s) 52
BstPI GGTNACC 1 cut(s) 211
BstSCI CCNGG 1 cut(s) 57
BstSFI CTRYAG 1 cut(s) 240
BstV1I GCAGC 1 cut(s) 136
BstX2I RGATCY 1 cut(s) 496
BstYI RGATCY 1 cut(s) 496
BtgI CCRYGG 1 cut(s) 307
BtsCI GGATG 1 cut(s) 442
BtsIMutI CAGTG 2 cut(s) 511, 631
CfoI GCGC 1 cut(s) 143
CseI GACGC 2 cut(s) 184, 243
CsiI ACCWGGT 1 cut(s) 57
Csp6I GTAC 1 cut(s) 380
CviAII CATG 3 cut(s) 49, 340, 583
CviJI RGCY 4 cut(s) 149, 199, 389, 542
CviKI_1 RGCY 4 cut(s) 149, 199, 389, 542
CviQI GTAC 1 cut(s) 380
DdeI CTNAG 1 cut(s) 383
DpnI GATC 4 cut(s) 20, 104, 116, 498
DpnII GATC 4 cut(s) 18, 102, 114, 496
Ecl136II GAGCTC 1 cut(s) 199
Eco24I GRGCYC 2 cut(s) 201, 391
Eco32I GATATC 1 cut(s) 622
Eco47III AGCGCT 1 cut(s) 142
Eco53kI GAGCTC 1 cut(s) 199
Eco91I GGTNACC 1 cut(s) 211
EcoICRI GAGCTC 1 cut(s) 199
EcoO65I GGTNACC 1 cut(s) 211
EcoRI GAATTC 2 cut(s) 131, 344
EcoRII CCWGG 1 cut(s) 57
EcoRV GATATC 1 cut(s) 622
EcoT38I GRGCYC 2 cut(s) 201, 391
FaeI CATG 3 cut(s) 52, 343, 586
FaiI YATR 6 cut(s) 25, 50, 329, 341, 431, 584
FalI AAGNNNNNCTT 2 cut(s) 396, 428
FatI CATG 3 cut(s) 48, 339, 582
Fnu4HI GCNGC 1 cut(s) 150
FokI GGATG 1 cut(s) 449
FriOI GRGCYC 2 cut(s) 201, 391
Fsp4HI GCNGC 1 cut(s) 150
GlaI GCGC 1 cut(s) 142
GluI GCNGC 1 cut(s) 150
GsuI CTGGAG 1 cut(s) 587
HaeII RGCGCY 1 cut(s) 144
HgaI GACGC 2 cut(s) 184, 243
HhaI GCGC 1 cut(s) 143
Hin1II CATG 3 cut(s) 52, 343, 586
Hin6I GCGC 1 cut(s) 141
HinP1I GCGC 1 cut(s) 141
HinfI GANTC 6 cut(s) 8, 107, 158, 292, 303, 487
HphI GGTGA 4 cut(s) 73, 160, 205, 211
Hpy166II GTNNAC 1 cut(s) 64
Hpy188I TCNGA 6 cut(s) 90, 112, 130, 163, 206, 400
Hpy188III TCNNGA 9 cut(s) 12, 40, 118, 136, 296, 317, 349, 491, 548
Hpy8I GTNNAC 1 cut(s) 64
HpyAV CCTTC 5 cut(s) 37, 250, 346, 422, 532
HpyCH4III ACNGT 2 cut(s) 217, 506
HpyCH4IV ACGT 1 cut(s) 183
HpyCH4V TGCA 2 cut(s) 339, 611
HpyF10VI GCNNNNNNNGC 2 cut(s) 149, 196
HpyF3I CTNAG 1 cut(s) 383
HpySE526I ACGT 1 cut(s) 183
Hsp92II CATG 3 cut(s) 52, 343, 586
HspAI GCGC 1 cut(s) 141
Kzo9I GATC 4 cut(s) 18, 102, 114, 496
LmnI GCTCC 1 cut(s) 14
LpnPI CCDG 8 cut(s) 44, 71, 131, 194, 362, 509, 533, 551
Lsp1109I GCAGC 1 cut(s) 136
MabI ACCWGGT 1 cut(s) 57
MaeII ACGT 1 cut(s) 183
MaeIII GTNAC 2 cut(s) 211, 217
MalI GATC 4 cut(s) 20, 104, 116, 498
MboI GATC 4 cut(s) 18, 102, 114, 496
MboII GAAGA 4 cut(s) 80, 454, 469, 506
MflI RGATCY 1 cut(s) 496
MhlI GDGCHC 2 cut(s) 201, 391
MluCI AATT 7 cut(s) 72, 131, 247, 260, 344, 560, 604
MlyI GAGTC 3 cut(s) 116, 167, 286
MmeI TCCRAC 3 cut(s) 90, 186, 414
MnlI CCTC 6 cut(s) 70, 90, 176, 280, 475, 562
MroXI GAANNNNTTC 1 cut(s) 411
MseI TTAA 1 cut(s) 230
MspR9I CCNGG 1 cut(s) 59
MvaI CCWGG 1 cut(s) 59
MwoI GCNNNNNNNGC 2 cut(s) 149, 196
NdeII GATC 4 cut(s) 18, 102, 114, 496
NlaIII CATG 3 cut(s) 52, 343, 586
NmuCI GTSAC 2 cut(s) 211, 217
NspI RCATGY 1 cut(s) 52
PdmI GAANNNNTTC 1 cut(s) 411
PfeI GAWTC 3 cut(s) 8, 303, 487
PkrI GCNGC 1 cut(s) 151
PleI GAGTC 3 cut(s) 115, 166, 286
PpsI GAGTC 3 cut(s) 115, 166, 286
Psp124BI GAGCTC 1 cut(s) 201
Psp6I CCWGG 1 cut(s) 57
PspEI GGTNACC 1 cut(s) 211
PspGI CCWGG 1 cut(s) 57
PsuI RGATCY 1 cut(s) 496
RsaI GTAC 1 cut(s) 381
RsaNI GTAC 1 cut(s) 380
SacI GAGCTC 1 cut(s) 201
SaqAI TTAA 1 cut(s) 230
SatI GCNGC 1 cut(s) 150
Sau3AI GATC 4 cut(s) 18, 102, 114, 496
SchI GAGTC 3 cut(s) 116, 167, 286
ScrFI CCNGG 1 cut(s) 59
SduI GDGCHC 2 cut(s) 201, 391
SetI ASST 7 cut(s) 63, 168, 186, 201, 326, 414, 528
SexAI ACCWGGT 1 cut(s) 57
SfcI CTRYAG 1 cut(s) 240
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
Sse9I AATT 7 cut(s) 72, 131, 247, 260, 344, 560, 604
SspI AATATT 1 cut(s) 85
SstI GAGCTC 1 cut(s) 201
StyD4I CCNGG 1 cut(s) 57
TaaI ACNGT 2 cut(s) 217, 506
TaiI ACGT 1 cut(s) 186
TaqI TCGA 2 cut(s) 105, 135
TasI AATT 7 cut(s) 72, 131, 247, 260, 344, 560, 604
TatI WGTACW 1 cut(s) 379
TfiI GAWTC 3 cut(s) 8, 303, 487
Tru1I TTAA 1 cut(s) 230
Tru9I TTAA 1 cut(s) 230
TscAI CASTG 2 cut(s) 511, 631
TseFI GTSAC 2 cut(s) 211, 217
TseI GCWGC 1 cut(s) 149
Tsp45I GTSAC 2 cut(s) 211, 217
TspDTI ATGAA 3 cut(s) 435, 582, 599
TspGWI ACGGA 1 cut(s) 324
TspRI CASTG 2 cut(s) 511, 631
XapI RAATTY 4 cut(s) 131, 247, 344, 604
XceI RCATGY 1 cut(s) 52
XmnI GAANNNNTTC 1 cut(s) 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.