FvH4_5g13870

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0010862
Physical Location & Seq
Forward (+)
7824768 .. 7828242
3475 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g13870.t3

Sequence Viewer

Length: 1098 bp
ATGGCGACCTCGAGCGAAGCACACGCTTCCGTCATCACCGCTCCGAGAAGCCTCTCGCCGCCGAAACAAACTCACCAAAACTTCTTCGTGTGGAGAGAGTTTCTGTGGGGAGGTATTGCTGGGGCGTTTGGGGAAGGAATCATGCATCCAATCGACACCGTAAAGACTCGGATTCAAAGCCAGGCTATTTTCAGTGCAAGTCAGCATCAAAAGAGCATCCTGCAGATGGTACGAACAGTCTGGGCTGTTGATGGATTAAAAGGTTTTTATAGAGGCATAGCTCCTGGTGTCACTGGTTCTCTTGCAACTGGAGCAACATATTTTGGTGTCATAGAGTCGACCAAAAAGTGGATTGAAGAGTCACATCCAAACCTTGGGGGACATTGGGCGCATTTCATTGCTGGAGCAGTTGGAGATACACTTGGTTCTTTTGTATATGTTCCATGTGAAGTGATGAAGCAACGCATGCAGGTTCAAGGGACAAAGGCTTCTTGGAGTTCCGCTATGCTGAAAGATAATATCTCTATGAAGCCTGGTATCCATATGTATGATTACTATACAGGGATGTTCCAGGCGGGCTGCTCAATATGGAAGGAGCAGGGGCCAAGAGGATTATATGCAGGATTCGGGTCAACACTTGCAAGGGATGTGCCTTTTGCGGGTCTGATGGTTATGTTCTATGAAGGCTTGAAAGATTTGACAGAGTATGGGAAGAAAAAGTACATGCACAATCAGAATTTCCATATTAATAGTTCCTTGGAGGGACTTATACTAGGAGGACTTGCTGGTGGCATGAGTTCTTTTCTTACCACTCCCTTTGATGTGATCAAGACAAGATTGCAAGTACAGGGATCAACATTGAGGTACAATGGCTGGTGGGATGCATTGCGAAGCATTTGGATTACTGAAGGTGCAAAGGGAATGTTCAGAGGTAGCATCCCCAGGGTTACATGGTATATTCCAGCTTCAGCTCTTACATTTATGGCTGTGGAGTTCCTCAGAGACCATTTCAAAGAGGGAGTGAGCATTGATGGCGTGCAAGAAGTTGCTAGCTTGACGGTAGATAAAAAAAATTCACCTTTACAAGGTTCGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF647 Mito_carr

Protein Analysis

366

Amino Acids

40.19

Weight (kDa)

9.24

Isoelectric Point (pI)

37.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 29 - 120 1.2e-22 Mitochondrial carrier protein
Mito_carr PF00153 129 - 212 9e-11 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010862)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74240 AT1G74240
fragaria_vesca FvH4_5g13870 FvH4_5g13870 FvH4_5g13870
malus_domestica MD06G1202800.v1.1 MD14G1211900.v1.1
prunus_persica Prupe.5G204700_v2.0.a1
pyrus_communis pycom14g17550
rosa_chinensis RchiOBHm_Chr7g0183061
rosa_laevigata RLG00000005082
rosa_multiflora Rmu_sc0000014.1_g000003
rosa_roxburghii Rroxscaffold_3G00270800
rosa_rugosa Rorug06G0452200 Rorug06G0452300
rosa_samantha Rh7AG055700 Rh7BG055000 Rh7CG056400 Rh7DG055200
rosa_wichuraiana Rw7G004530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 460
AccB7I CCANNNNNTGG 2 cut(s) 348, 374
AccBSI CCGCTC 1 cut(s) 41
AccI GTMKAC 1 cut(s) 338
AciI CCGC 5 cut(s) 39, 59, 501, 575, 659
AclWI GGATC 1 cut(s) 859
AcsI RAATTY 2 cut(s) 736, 1072
AcuI CTGAAG 2 cut(s) 927, 951
AfaI GTAC 4 cut(s) 231, 722, 846, 866
AfiI CCNNNNNNNGG 5 cut(s) 226, 348, 374, 659, 1085
AgsI TTSAA 5 cut(s) 176, 356, 476, 691, 1012
AjnI CCWGG 5 cut(s) 180, 283, 532, 570, 941
AluBI AGCT 4 cut(s) 281, 965, 971, 1053
AluI AGCT 4 cut(s) 281, 965, 971, 1053
Alw26I GTCTC 1 cut(s) 996
AlwI GGATC 1 cut(s) 859
Ama87I CYCGRG 1 cut(s) 10
AoxI GGCC 1 cut(s) 602
ApeKI GCWGC 1 cut(s) 579
ApoI RAATTY 2 cut(s) 736, 1072
AseI ATTAAT 1 cut(s) 747
AspLEI GCGC 1 cut(s) 391
AspS9I GGNCC 1 cut(s) 602
AsuHPI GGTGA 3 cut(s) 28, 65, 1068
AsuNHI GCTAGC 1 cut(s) 1049
AvaI CYCGRG 1 cut(s) 10
BarI GAAGNNNNNNTAC 2 cut(s) 704, 736
BbvI GCAGC 1 cut(s) 566
BccI CCATC 4 cut(s) 220, 245, 661, 1025
BciT130I CCWGG 5 cut(s) 182, 285, 534, 572, 943
BciVI GTATCC 1 cut(s) 548
BclI TGATCA 1 cut(s) 825
BcoDI GTCTC 1 cut(s) 996
BfaI CTAG 2 cut(s) 773, 1050
BfmI CTRYAG 1 cut(s) 221
BfuAI ACCTGC 1 cut(s) 460
BfuI GTATCC 1 cut(s) 548
BisI GCNGC 2 cut(s) 59, 580
BlsI GCNGC 2 cut(s) 60, 581
Bme1390I CCNGG 5 cut(s) 182, 285, 534, 572, 943
BmeT110I CYCGRG 1 cut(s) 10
BmgT120I GGNCC 1 cut(s) 602
BmiI GGNNCC 1 cut(s) 603
BmrFI CCNGG 5 cut(s) 182, 285, 534, 572, 943
BmsI GCATC 5 cut(s) 154, 214, 225, 871, 945
BmtI GCTAGC 1 cut(s) 1053
BpmI CTGGAG 2 cut(s) 330, 423
BsaI GGTCTC 1 cut(s) 996
BsaJI CCNNGG 4 cut(s) 373, 756, 941, 942
Bsc4I CCNNNNNNNGG 5 cut(s) 226, 348, 374, 659, 1085
Bse1I ACTGG 2 cut(s) 298, 313
Bse3DI GCAATG 2 cut(s) 396, 884
BseBI CCWGG 5 cut(s) 182, 285, 534, 572, 943
BseDI CCNNGG 4 cut(s) 373, 756, 941, 942
BseGI GGATG 7 cut(s) 145, 216, 364, 570, 652, 886, 936
BseLI CCNNNNNNNGG 5 cut(s) 226, 348, 374, 659, 1085
BseMI GCAATG 2 cut(s) 396, 884
BseMII CTCAG 1 cut(s) 1012
BseNI ACTGG 2 cut(s) 298, 313
BseXI GCAGC 1 cut(s) 566
BseYI CCCAGC 1 cut(s) 119
BshFI GGCC 1 cut(s) 604
BsiHKCI CYCGRG 1 cut(s) 10
BslFI GGGAC 3 cut(s) 393, 493, 777
BslI CCNNNNNNNGG 5 cut(s) 226, 348, 374, 659, 1085
BsmAI GTCTC 1 cut(s) 996
BsmFI GGGAC 3 cut(s) 393, 493, 777
BsnI GGCC 1 cut(s) 604
Bso31I GGTCTC 1 cut(s) 996
BsoBI CYCGRG 1 cut(s) 10
Bsp143I GATC 2 cut(s) 825, 851
BspACI CCGC 5 cut(s) 39, 59, 501, 575, 659
BspANI GGCC 1 cut(s) 604
BspCNI CTCAG 1 cut(s) 1011
BspLI GGNNCC 1 cut(s) 603
BspMAI CTGCAG 1 cut(s) 225
BspMI ACCTGC 1 cut(s) 460
BspOI GCTAGC 1 cut(s) 1053
BspPI GGATC 1 cut(s) 859
BspTNI GGTCTC 1 cut(s) 996
BsrBI CCGCTC 1 cut(s) 41
BsrDI GCAATG 2 cut(s) 396, 884
BsrI ACTGG 2 cut(s) 298, 313
BssECI CCNNGG 4 cut(s) 373, 756, 941, 942
BssMI GATC 2 cut(s) 825, 851
BssT1I CCWWGG 2 cut(s) 373, 756
Bst2UI CCWGG 5 cut(s) 182, 285, 534, 572, 943
Bst4CI ACNGT 3 cut(s) 160, 238, 1060
Bst6I CTCTTC 1 cut(s) 351
BstAPI GCANNNNNTGC 1 cut(s) 466
BstC8I GCNNGC 4 cut(s) 467, 577, 1037, 1051
BstDEI CTNAG 1 cut(s) 998
BstENI CCTNNNNNAGG 1 cut(s) 1083
BstF5I GGATG 7 cut(s) 145, 216, 364, 570, 652, 886, 936
BstHHI GCGC 1 cut(s) 391
BstKTI GATC 2 cut(s) 828, 854
BstMAI GTCTC 1 cut(s) 996
BstMBI GATC 2 cut(s) 825, 851
BstMWI GCNNNNNNNGC 3 cut(s) 311, 466, 1032
BstNI CCWGG 5 cut(s) 182, 285, 534, 572, 943
BstNSI RCATGY 2 cut(s) 469, 727
BstSCI CCNGG 5 cut(s) 180, 283, 532, 570, 941
BstSFI CTRYAG 1 cut(s) 221
BstV1I GCAGC 1 cut(s) 566
BsuI GTATCC 1 cut(s) 548
BsuRI GGCC 1 cut(s) 604
BtsCI GGATG 7 cut(s) 145, 216, 364, 570, 652, 886, 936
BtsIMutI CAGTG 2 cut(s) 199, 291
BveI ACCTGC 1 cut(s) 460
Cac8I GCNNGC 4 cut(s) 467, 577, 1037, 1051
CfoI GCGC 1 cut(s) 391
Cfr13I GGNCC 1 cut(s) 602
Csp6I GTAC 4 cut(s) 230, 721, 845, 865
CspCI CAANNNNNGTGG 2 cut(s) 799, 834
CviAII CATG 6 cut(s) 142, 444, 466, 724, 793, 951
CviQI GTAC 4 cut(s) 230, 721, 845, 865
DdeI CTNAG 1 cut(s) 998
DpnI GATC 2 cut(s) 827, 853
DpnII GATC 2 cut(s) 825, 851
Eam1104I CTCTTC 1 cut(s) 351
EarI CTCTTC 1 cut(s) 351
Eco130I CCWWGG 2 cut(s) 373, 756
Eco31I GGTCTC 1 cut(s) 996
Eco57I CTGAAG 2 cut(s) 927, 951
Eco88I CYCGRG 1 cut(s) 10
EcoNI CCTNNNNNAGG 1 cut(s) 1083
EcoRII CCWGG 5 cut(s) 180, 283, 532, 570, 941
EcoT14I CCWWGG 2 cut(s) 373, 756
EcoT22I ATGCAT 2 cut(s) 147, 886
ErhI CCWWGG 2 cut(s) 373, 756
FaeI CATG 6 cut(s) 145, 447, 469, 727, 796, 954
FaqI GGGAC 3 cut(s) 393, 493, 777
FatI CATG 6 cut(s) 141, 443, 465, 723, 792, 950
FauI CCCGC 2 cut(s) 568, 652
FauNDI CATATG 1 cut(s) 543
FbaI TGATCA 1 cut(s) 825
FblI GTMKAC 1 cut(s) 338
Fnu4HI GCNGC 2 cut(s) 59, 580
FokI GGATG 7 cut(s) 132, 203, 351, 577, 659, 893, 923
Fsp4HI GCNGC 2 cut(s) 59, 580
FspBI CTAG 2 cut(s) 773, 1050
GlaI GCGC 1 cut(s) 390
GluI GCNGC 2 cut(s) 59, 580
GsaI CCCAGC 1 cut(s) 123
GsuI CTGGAG 2 cut(s) 330, 423
HaeIII GGCC 1 cut(s) 604
HhaI GCGC 1 cut(s) 391
Hin1II CATG 6 cut(s) 145, 447, 469, 727, 796, 954
Hin6I GCGC 1 cut(s) 389
HinP1I GCGC 1 cut(s) 389
HincII GTYRAC 2 cut(s) 339, 633
HindII GTYRAC 2 cut(s) 339, 633
HinfI GANTC 6 cut(s) 138, 166, 172, 335, 359, 624
HphI GGTGA 3 cut(s) 28, 65, 1068
Hpy166II GTNNAC 2 cut(s) 339, 633
Hpy188I TCNGA 6 cut(s) 45, 171, 666, 735, 929, 1001
Hpy188III TCNNGA 1 cut(s) 829
Hpy8I GTNNAC 2 cut(s) 339, 633
HpyAV CCTTC 4 cut(s) 128, 586, 677, 902
HpyCH4III ACNGT 3 cut(s) 160, 238, 1060
HpyF10VI GCNNNNNNNGC 3 cut(s) 311, 466, 1032
HpyF3I CTNAG 1 cut(s) 998
Hsp92II CATG 6 cut(s) 145, 447, 469, 727, 796, 954
HspAI GCGC 1 cut(s) 389
Ksp22I TGATCA 1 cut(s) 825
Kzo9I GATC 2 cut(s) 825, 851
LmnI GCTCC 5 cut(s) 46, 286, 311, 404, 595
Lsp1109I GCAGC 1 cut(s) 566
LweI GCATC 5 cut(s) 154, 214, 225, 871, 945
MaeI CTAG 2 cut(s) 773, 1050
MaeIII GTNAC 3 cut(s) 289, 360, 946
MalI GATC 2 cut(s) 827, 853
MbiI CCGCTC 1 cut(s) 41
MboI GATC 2 cut(s) 825, 851
MboII GAAGA 3 cut(s) 76, 368, 724
MluCI AATT 2 cut(s) 736, 1072
MlyI GAGTC 3 cut(s) 160, 344, 368
MmeI TCCRAC 1 cut(s) 391
Mph1103I ATGCAT 2 cut(s) 147, 886
MseI TTAA 3 cut(s) 257, 747, 1096
MslI CAYNNNNRTG 1 cut(s) 546
MspR9I CCNGG 5 cut(s) 182, 285, 534, 572, 943
MvaI CCWGG 5 cut(s) 182, 285, 534, 572, 943
MwoI GCNNNNNNNGC 3 cut(s) 311, 466, 1032
NdeI CATATG 1 cut(s) 543
NdeII GATC 2 cut(s) 825, 851
NheI GCTAGC 1 cut(s) 1049
NlaIII CATG 6 cut(s) 145, 447, 469, 727, 796, 954
NlaIV GGNNCC 1 cut(s) 603
NmuCI GTSAC 2 cut(s) 289, 360
NsiI ATGCAT 2 cut(s) 147, 886
NspI RCATGY 2 cut(s) 469, 727
PaeI GCATGC 1 cut(s) 469
PaeR7I CTCGAG 1 cut(s) 10
PasI CCCWGGG 1 cut(s) 942
PfeI GAWTC 3 cut(s) 138, 172, 624
PflMI CCANNNNNTGG 2 cut(s) 348, 374
PkrI GCNGC 2 cut(s) 60, 581
PleI GAGTC 3 cut(s) 160, 343, 367
PpsI GAGTC 3 cut(s) 160, 343, 367
PshBI ATTAAT 1 cut(s) 747
Psp6I CCWGG 5 cut(s) 180, 283, 532, 570, 941
PspFI CCCAGC 1 cut(s) 119
PspGI CCWGG 5 cut(s) 180, 283, 532, 570, 941
PspN4I GGNNCC 1 cut(s) 603
PspPI GGNCC 1 cut(s) 602
PspXI VCTCGAGB 1 cut(s) 10
PstI CTGCAG 1 cut(s) 225
RsaI GTAC 4 cut(s) 231, 722, 846, 866
RsaNI GTAC 4 cut(s) 230, 721, 845, 865
RseI CAYNNNNRTG 1 cut(s) 546
SalI GTCGAC 1 cut(s) 337
SaqAI TTAA 3 cut(s) 257, 747, 1096
SatI GCNGC 2 cut(s) 59, 580
Sau3AI GATC 2 cut(s) 825, 851
Sau96I GGNCC 1 cut(s) 602
SchI GAGTC 3 cut(s) 160, 344, 368
ScrFI CCNGG 5 cut(s) 182, 285, 534, 572, 943
SfaNI GCATC 5 cut(s) 154, 214, 225, 871, 945
SfcI CTRYAG 1 cut(s) 221
Sfr274I CTCGAG 1 cut(s) 10
SlaI CTCGAG 1 cut(s) 10
SmiMI CAYNNNNRTG 1 cut(s) 546
SmlI CTYRAG 1 cut(s) 10
SmoI CTYRAG 1 cut(s) 10
SphI GCATGC 1 cut(s) 469
Sse9I AATT 2 cut(s) 736, 1072
SsiI CCGC 5 cut(s) 39, 59, 501, 575, 659
SspMI CTAG 2 cut(s) 773, 1050
StyD4I CCNGG 5 cut(s) 180, 283, 532, 570, 941
StyI CCWWGG 2 cut(s) 373, 756
TaaI ACNGT 3 cut(s) 160, 238, 1060
TaqI TCGA 3 cut(s) 11, 153, 338
TasI AATT 2 cut(s) 736, 1072
TatI WGTACW 2 cut(s) 720, 844
TauI GCSGC 1 cut(s) 61
TfiI GAWTC 3 cut(s) 138, 172, 624
Tru1I TTAA 3 cut(s) 257, 747, 1096
Tru9I TTAA 3 cut(s) 257, 747, 1096
TscAI CASTG 2 cut(s) 199, 298
TseFI GTSAC 2 cut(s) 289, 360
TseI GCWGC 1 cut(s) 579
Tsp45I GTSAC 2 cut(s) 289, 360
TspDTI ATGAA 4 cut(s) 385, 470, 542, 696
TspGWI ACGGA 1 cut(s) 19
TspRI CASTG 2 cut(s) 199, 298
Van91I CCANNNNNTGG 2 cut(s) 348, 374
VspI ATTAAT 1 cut(s) 747
XagI CCTNNNNNAGG 1 cut(s) 1083
XapI RAATTY 2 cut(s) 736, 1072
XceI RCATGY 2 cut(s) 469, 727
XhoI CTCGAG 1 cut(s) 10
XmiI GTMKAC 1 cut(s) 338
XspI CTAG 2 cut(s) 773, 1050
Zsp2I ATGCAT 2 cut(s) 147, 886
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.