Prupe.5G204700_v2.0.a1

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0010862
Physical Location & Seq
Reverse (-)
16402672 .. 16407338
4667 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G204700.1

Sequence Viewer

Length: 1062 bp
ATGGCGATACAGAGCTCCACTTCGAGCGATACAACTCAGAAACACTTCTTTGTAATGAGGGAGTTTCTGTGGGGAGCTATCGCTGGGGCATTTGGGGAAGGAATGATGCATCCAGTTGACACCGTAAAGACACGTATTCAGAGCCAAGCTATGCTTACCGCAAGTAAGAACCCAAAGAGCATACTGCAGATGGTACGAGCAGTCTGGGTTGCTGATGGATTAAGGGGCTTTTATAGGGGTATAGCTCCTGGTGTCACTGGTTCTCTTGCAACTGGAGCAACATATTTTGGTGTTATAGAGTCGACCAAAAAGTGGATTGAAGAATCACATCCAAGCCTTGGGGGACATTGGGCACATTTTATTGCTGGAGCTGTTGGAGATACACTTGGTTCTTTTGTATATGTTCCATGTGAAGTGATGAAGCAACGCATGCAGGTTCAAGGCACACTGACTTCTTGGAGTTCTGTCATGATGAAAGATAATATCTCTATGAAGCCTAGTCTCCAAATGTATGGTTATTATACTGGGATGTTCCAGGCTGGCTGCTCAATATTGAAGGAACAGGGGCTGAAAGGATTATATGCAGGGTACTGGTCCACACTCGCAAGGGATGTGCCTTTTGCTGGTCTAATGGTTGTGTTTTATGAAGGCTTGAAAGATTTGACAGAGTATGGGAAGCAAAATTACATACGCAATCCAAATTTCCGTATTAATAGTTCTGTTGAAGGACTCATACTAGGAGGATTGGCTGGTGGGTTTAGTGCATATCTTACCACTCCCTTGGATGTGGTCAAAACAAGATTGCAAATACAGGGATCAACCTTGAGGTATAATGGCTGGTTGGATGCAATTCGTAGCATATGGATGGTTGAAGGTGCACATGGGATGTTCAGAGGTAGCATCCCCAGGATTACATGGTATATTCCAGCTTCAGCTCTTACATTTATGGCTGTGGAATTTCTCAGAGACCACTTCAATGAAGGATTGAGCAATCCTAACTCCCAAGATGTTGCTAGCATGTTGGTAGAGAAAAAGGGATCACCCTTACAAGGGGCGGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF647 Mito_carr

Protein Analysis

354

Amino Acids

38.79

Weight (kDa)

9.16

Isoelectric Point (pI)

31.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010862)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74240 AT1G74240
fragaria_vesca FvH4_5g13870 FvH4_5g13870 FvH4_5g13870
malus_domestica MD06G1202800.v1.1 MD14G1211900.v1.1
prunus_persica Prupe.5G204700_v2.0.a1
pyrus_communis pycom14g17550
rosa_chinensis RchiOBHm_Chr7g0183061
rosa_laevigata RLG00000005082
rosa_multiflora Rmu_sc0000014.1_g000003
rosa_roxburghii Rroxscaffold_3G00270800
rosa_rugosa Rorug06G0452200 Rorug06G0452300
rosa_samantha Rh7AG055700 Rh7BG055000 Rh7CG056400 Rh7DG055200
rosa_wichuraiana Rw7G004530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 424
AccB7I CCANNNNNTGG 2 cut(s) 312, 338
AccI GTMKAC 1 cut(s) 302
AciI CCGC 2 cut(s) 159, 1055
AclWI GGATC 2 cut(s) 823, 1045
AcsI RAATTY 2 cut(s) 700, 956
AcuI CTGAAG 1 cut(s) 915
AfaI GTAC 2 cut(s) 195, 590
AfiI CCNNNNNNNGG 5 cut(s) 312, 338, 623, 1049, 1050
AflIII ACRYGT 1 cut(s) 131
AgsI TTSAA 7 cut(s) 320, 440, 556, 655, 725, 872, 976
AjnI CCWGG 3 cut(s) 247, 534, 905
AluBI AGCT 7 cut(s) 15, 77, 149, 245, 371, 929, 935
AluI AGCT 7 cut(s) 15, 77, 149, 245, 371, 929, 935
Alw21I GWGCWC 2 cut(s) 17, 880
Alw26I GTCTC 2 cut(s) 506, 960
Alw44I GTGCAC 1 cut(s) 876
AlwI GGATC 2 cut(s) 823, 1045
AlwNI CAGNNNCTG 1 cut(s) 568
ApaLI GTGCAC 1 cut(s) 876
ApeKI GCWGC 1 cut(s) 543
ApoI RAATTY 2 cut(s) 700, 956
AseI ATTAAT 1 cut(s) 711
Asp700I GAANNNNTTC 1 cut(s) 44
AspS9I GGNCC 1 cut(s) 594
AsuHPI GGTGA 1 cut(s) 1032
AsuNHI GCTAGC 1 cut(s) 1013
AvaII GGWCC 1 cut(s) 594
BaeGI GKGCMC 2 cut(s) 355, 880
BanII GRGCYC 1 cut(s) 17
BarI GAAGNNNNNNTAC 4 cut(s) 668, 700, 717, 749
Bbv12I GWGCWC 2 cut(s) 17, 880
BbvI GCAGC 1 cut(s) 530
BccI CCATC 3 cut(s) 184, 209, 859
BciT130I CCWGG 3 cut(s) 249, 536, 907
BcoDI GTCTC 2 cut(s) 506, 960
BfaI CTAG 3 cut(s) 498, 737, 1014
BfmI CTRYAG 1 cut(s) 185
BfuAI ACCTGC 1 cut(s) 424
BisI GCNGC 2 cut(s) 544, 1056
BlsI GCNGC 2 cut(s) 545, 1057
Bme1390I CCNGG 3 cut(s) 249, 536, 907
Bme18I GGWCC 1 cut(s) 594
BmgT120I GGNCC 1 cut(s) 594
BmrFI CCNGG 3 cut(s) 249, 536, 907
BmrI ACTGGG 1 cut(s) 534
BmsI GCATC 4 cut(s) 96, 118, 835, 909
BmtI GCTAGC 1 cut(s) 1017
BmuI ACTGGG 1 cut(s) 534
BpmI CTGGAG 2 cut(s) 294, 387
BpuEI CTTGAG 1 cut(s) 844
BsaAI YACGTR 1 cut(s) 134
BsaI GGTCTC 1 cut(s) 960
BsaJI CCNNGG 3 cut(s) 337, 780, 905
BsaXI ACNNNNNCTCC 2 cut(s) 53, 83
Bsc4I CCNNNNNNNGG 5 cut(s) 312, 338, 623, 1049, 1050
Bse1I ACTGG 5 cut(s) 113, 262, 277, 529, 596
BseBI CCWGG 3 cut(s) 249, 536, 907
BseDI CCNNGG 3 cut(s) 337, 780, 905
BseGI GGATG 9 cut(s) 109, 328, 534, 616, 790, 850, 870, 891, 900
BseLI CCNNNNNNNGG 5 cut(s) 312, 338, 623, 1049, 1050
BseMII CTCAG 2 cut(s) 50, 976
BseNI ACTGG 5 cut(s) 113, 262, 277, 529, 596
BseSI GKGCMC 2 cut(s) 355, 880
BseXI GCAGC 1 cut(s) 530
BseYI CCCAGC 1 cut(s) 83
BsiHKAI GWGCWC 2 cut(s) 17, 880
BslFI GGGAC 1 cut(s) 357
BslI CCNNNNNNNGG 5 cut(s) 312, 338, 623, 1049, 1050
BsmAI GTCTC 2 cut(s) 506, 960
BsmFI GGGAC 1 cut(s) 357
Bso31I GGTCTC 1 cut(s) 960
Bsp1286I GDGCHC 3 cut(s) 17, 355, 880
Bsp143I GATC 2 cut(s) 815, 1037
BspACI CCGC 2 cut(s) 159, 1055
BspCNI CTCAG 2 cut(s) 49, 975
BspHI TCATGA 1 cut(s) 468
BspMAI CTGCAG 1 cut(s) 189
BspMI ACCTGC 1 cut(s) 424
BspOI GCTAGC 1 cut(s) 1017
BspPI GGATC 2 cut(s) 823, 1045
BspTNI GGTCTC 1 cut(s) 960
BsrI ACTGG 5 cut(s) 113, 262, 277, 529, 596
BssECI CCNNGG 3 cut(s) 337, 780, 905
BssMI GATC 2 cut(s) 815, 1037
BssT1I CCWWGG 2 cut(s) 337, 780
Bst2UI CCWGG 3 cut(s) 249, 536, 907
Bst4CI ACNGT 1 cut(s) 124
BstAPI GCANNNNNTGC 1 cut(s) 430
BstBAI YACGTR 1 cut(s) 134
BstC8I GCNNGC 3 cut(s) 431, 541, 1015
BstDEI CTNAG 2 cut(s) 36, 962
BstF5I GGATG 9 cut(s) 109, 328, 534, 616, 790, 850, 870, 891, 900
BstKTI GATC 2 cut(s) 818, 1040
BstMAI GTCTC 2 cut(s) 506, 960
BstMBI GATC 2 cut(s) 815, 1037
BstMWI GCNNNNNNNGC 2 cut(s) 275, 430
BstNI CCWGG 3 cut(s) 249, 536, 907
BstNSI RCATGY 2 cut(s) 433, 1021
BstSCI CCNGG 3 cut(s) 247, 534, 905
BstSFI CTRYAG 1 cut(s) 185
BstSLI GKGCMC 2 cut(s) 355, 880
BstV1I GCAGC 1 cut(s) 530
BstXI CCANNNNNNTGG 2 cut(s) 512, 781
BtsCI GGATG 9 cut(s) 109, 328, 534, 616, 790, 850, 870, 891, 900
BtsIMutI CAGTG 2 cut(s) 255, 446
BveI ACCTGC 1 cut(s) 424
Cac8I GCNNGC 3 cut(s) 431, 541, 1015
CaiI CAGNNNCTG 1 cut(s) 568
CciI TCATGA 1 cut(s) 468
Cfr13I GGNCC 1 cut(s) 594
Csp6I GTAC 2 cut(s) 194, 589
CviAII CATG 6 cut(s) 408, 430, 469, 881, 915, 1018
CviQI GTAC 2 cut(s) 194, 589
DdeI CTNAG 2 cut(s) 36, 962
DpnI GATC 2 cut(s) 817, 1039
DpnII GATC 2 cut(s) 815, 1037
Ecl136II GAGCTC 1 cut(s) 15
Eco130I CCWWGG 2 cut(s) 337, 780
Eco24I GRGCYC 1 cut(s) 17
Eco31I GGTCTC 1 cut(s) 960
Eco47I GGWCC 1 cut(s) 594
Eco53kI GAGCTC 1 cut(s) 15
Eco57I CTGAAG 1 cut(s) 915
EcoICRI GAGCTC 1 cut(s) 15
EcoRII CCWGG 3 cut(s) 247, 534, 905
EcoT14I CCWWGG 2 cut(s) 337, 780
EcoT22I ATGCAT 1 cut(s) 111
EcoT38I GRGCYC 1 cut(s) 17
ErhI CCWWGG 2 cut(s) 337, 780
FaeI CATG 6 cut(s) 411, 433, 472, 884, 918, 1021
FalI AAGNNNNNCTT 2 cut(s) 138, 170
FaqI GGGAC 1 cut(s) 357
FatI CATG 6 cut(s) 407, 429, 468, 880, 914, 1017
FauNDI CATATG 1 cut(s) 860
FblI GTMKAC 1 cut(s) 302
Fnu4HI GCNGC 2 cut(s) 544, 1056
FokI GGATG 9 cut(s) 96, 315, 541, 623, 797, 857, 877, 887, 898
FriOI GRGCYC 1 cut(s) 17
Fsp4HI GCNGC 2 cut(s) 544, 1056
FspBI CTAG 3 cut(s) 498, 737, 1014
GluI GCNGC 2 cut(s) 544, 1056
GsaI CCCAGC 1 cut(s) 87
GsuI CTGGAG 2 cut(s) 294, 387
Hin1II CATG 6 cut(s) 411, 433, 472, 884, 918, 1021
HincII GTYRAC 2 cut(s) 118, 303
HindII GTYRAC 2 cut(s) 118, 303
HinfI GANTC 3 cut(s) 299, 323, 729
HphI GGTGA 1 cut(s) 1032
Hpy166II GTNNAC 4 cut(s) 118, 303, 597, 878
Hpy188I TCNGA 4 cut(s) 39, 141, 893, 965
Hpy188III TCNNGA 1 cut(s) 469
Hpy8I GTNNAC 4 cut(s) 118, 303, 597, 878
HpyAV CCTTC 6 cut(s) 92, 550, 641, 719, 866, 974
HpyCH4III ACNGT 1 cut(s) 124
HpyCH4IV ACGT 1 cut(s) 133
HpyCH4V TGCA 9 cut(s) 109, 187, 269, 433, 584, 764, 805, 848, 878
HpyF10VI GCNNNNNNNGC 2 cut(s) 275, 430
HpyF3I CTNAG 2 cut(s) 36, 962
HpySE526I ACGT 1 cut(s) 133
Hsp92II CATG 6 cut(s) 411, 433, 472, 884, 918, 1021
Kzo9I GATC 2 cut(s) 815, 1037
LmnI GCTCC 5 cut(s) 20, 74, 250, 275, 368
Lsp1109I GCAGC 1 cut(s) 530
LweI GCATC 4 cut(s) 96, 118, 835, 909
MaeI CTAG 3 cut(s) 498, 737, 1014
MaeII ACGT 1 cut(s) 133
MaeIII GTNAC 1 cut(s) 253
MalI GATC 2 cut(s) 817, 1039
MboI GATC 2 cut(s) 815, 1037
MboII GAAGA 1 cut(s) 332
MhlI GDGCHC 3 cut(s) 17, 355, 880
MluCI AATT 4 cut(s) 682, 700, 849, 956
MlyI GAGTC 2 cut(s) 308, 723
MmeI TCCRAC 2 cut(s) 355, 822
MnlI CCTC 4 cut(s) 51, 734, 819, 887
Mph1103I ATGCAT 1 cut(s) 111
MroXI GAANNNNTTC 1 cut(s) 44
MseI TTAA 2 cut(s) 221, 711
MslI CAYNNNNRTG 2 cut(s) 863, 975
MspR9I CCNGG 3 cut(s) 249, 536, 907
MvaI CCWGG 3 cut(s) 249, 536, 907
MwoI GCNNNNNNNGC 2 cut(s) 275, 430
NdeI CATATG 1 cut(s) 860
NdeII GATC 2 cut(s) 815, 1037
NheI GCTAGC 1 cut(s) 1013
NlaIII CATG 6 cut(s) 411, 433, 472, 884, 918, 1021
NmuCI GTSAC 1 cut(s) 253
NsiI ATGCAT 1 cut(s) 111
NspI RCATGY 2 cut(s) 433, 1021
PaeI GCATGC 1 cut(s) 433
PagI TCATGA 1 cut(s) 468
PdmI GAANNNNTTC 1 cut(s) 44
PfeI GAWTC 1 cut(s) 323
PflMI CCANNNNNTGG 2 cut(s) 312, 338
PkrI GCNGC 2 cut(s) 545, 1057
PleI GAGTC 2 cut(s) 307, 723
PpsI GAGTC 2 cut(s) 307, 723
Ppu21I YACGTR 1 cut(s) 134
PshBI ATTAAT 1 cut(s) 711
Psp124BI GAGCTC 1 cut(s) 17
Psp6I CCWGG 3 cut(s) 247, 534, 905
PspFI CCCAGC 1 cut(s) 83
PspGI CCWGG 3 cut(s) 247, 534, 905
PspPI GGNCC 1 cut(s) 594
PsrI GAACNNNNNNTAC 2 cut(s) 700, 732
PstI CTGCAG 1 cut(s) 189
PstNI CAGNNNCTG 1 cut(s) 568
RsaI GTAC 2 cut(s) 195, 590
RsaNI GTAC 2 cut(s) 194, 589
RseI CAYNNNNRTG 2 cut(s) 863, 975
SacI GAGCTC 1 cut(s) 17
SalI GTCGAC 1 cut(s) 301
SaqAI TTAA 2 cut(s) 221, 711
SatI GCNGC 2 cut(s) 544, 1056
Sau3AI GATC 2 cut(s) 815, 1037
Sau96I GGNCC 1 cut(s) 594
SchI GAGTC 2 cut(s) 308, 723
ScrFI CCNGG 3 cut(s) 249, 536, 907
SduI GDGCHC 3 cut(s) 17, 355, 880
SfaNI GCATC 4 cut(s) 96, 118, 835, 909
SfcI CTRYAG 1 cut(s) 185
SinI GGWCC 1 cut(s) 594
SmiMI CAYNNNNRTG 2 cut(s) 863, 975
SmlI CTYRAG 1 cut(s) 823
SmoI CTYRAG 1 cut(s) 823
SphI GCATGC 1 cut(s) 433
Sse9I AATT 4 cut(s) 682, 700, 849, 956
SsiI CCGC 2 cut(s) 159, 1055
SspI AATATT 1 cut(s) 552
SspMI CTAG 3 cut(s) 498, 737, 1014
SstI GAGCTC 1 cut(s) 17
StyD4I CCNGG 3 cut(s) 247, 534, 905
StyI CCWWGG 2 cut(s) 337, 780
TaaI ACNGT 1 cut(s) 124
TaiI ACGT 1 cut(s) 136
TaqI TCGA 2 cut(s) 23, 302
TasI AATT 4 cut(s) 682, 700, 849, 956
TauI GCSGC 1 cut(s) 1058
TfiI GAWTC 1 cut(s) 323
Tru1I TTAA 2 cut(s) 221, 711
Tru9I TTAA 2 cut(s) 221, 711
TscAI CASTG 2 cut(s) 262, 453
TseFI GTSAC 1 cut(s) 253
TseI GCWGC 1 cut(s) 543
Tsp45I GTSAC 1 cut(s) 253
TspDTI ATGAA 5 cut(s) 434, 488, 506, 660, 993
TspGWI ACGGA 1 cut(s) 695
TspRI CASTG 2 cut(s) 262, 453
Van91I CCANNNNNTGG 2 cut(s) 312, 338
VneI GTGCAC 1 cut(s) 876
VpaK11BI GGWCC 1 cut(s) 594
VspI ATTAAT 1 cut(s) 711
XapI RAATTY 2 cut(s) 700, 956
XceI RCATGY 2 cut(s) 433, 1021
XmiI GTMKAC 1 cut(s) 302
XmnI GAANNNNTTC 1 cut(s) 44
XspI CTAG 3 cut(s) 498, 737, 1014
Zsp2I ATGCAT 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.