MD06G1202800.v1.1

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0010862
Physical Location & Seq
Reverse (-)
33594430 .. 33598257
3828 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1202800.v1.1.491

Sequence Viewer

Length: 921 bp
ATGAGGGAGTTTCTGTGGGGTGCTGTTGCTGGAGCATTTGGGGAAGGAATGATGCATCCGGTCGACACCGTAAAAACACGCATTCAGGGCCAGGCTATTCTCTCTGCAAGTCAGAAACCGAAGAGCATAATGCATATGGTACGAGCAGTCTGGGCAGCCGATGGATTGAGAGGCTTTTATACGGGTATAGCTCCAGGTGTCACCGGTTCTCTTGCAACTGGAGCAACATACTTTGGTGTCATCGAGTCGACCAAAAAGTGGATTGAAGAATCACATCCAAGCCTTGAGGGACATTGGGCGCATTTCATTGCTGGAGCGTTGGTACGTGATACACTTGGTTCTGTTGTATATGTTCCATGTGAAGTGATGAAGCAACGCATGCAGGTTCAAGGCACGATGGCCTCTTGGAGTTCTGTTGTCATGAAGGATAATATCGCTATGAAGCCTGGTATCCAAATGTATGGTTACTATACTGGGATTTTCCATGCTGGCTGCTCAATATGGAATGAGCAGGGGCTAAGAGGATTATATGCAGGTTTTGTTTTACAAAGGCTTGAAAGATTTGACAGAGTTGGGAAGCAGAAATACATACAGGATCCAAATTTCCATACTAATAGTTCTGTCAAGGGGCTTGCACTAGGAGGATTGGCTGGTGGTATGTACAAAGGCTGGTTGGATGCAATTCGCAGCGTATGGAGGGCCGAAGGTGCACCAGGGATGTTCAGAGGCAGCATCCCCAGGATTGCATGGTATATTCCAGCTTCAGCACTTACGTTTATGGCTGTGGAATTTCTCAGAGAACATTTCAACGAAGGATTGAGCAACGAGAACAGCCGAGAAGTTGCTAGCATGTCAGTGGAGAAAAAGTCCAAAACCTCCGGCAAGCGGCCTCATTGTGCGAGTTATCTCCTTGAATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF647 Mito_carr

Protein Analysis

307

Amino Acids

33.8

Weight (kDa)

9.43

Isoelectric Point (pI)

29.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 2 - 90 6.1e-20 Mitochondrial carrier protein
Mito_carr PF00153 98 - 183 7.5e-08 Mitochondrial carrier protein
Mito_carr PF00153 222 - 271 4e-09 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010862)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74240 AT1G74240
fragaria_vesca FvH4_5g13870 FvH4_5g13870 FvH4_5g13870
malus_domestica MD06G1202800.v1.1 MD14G1211900.v1.1
prunus_persica Prupe.5G204700_v2.0.a1
pyrus_communis pycom14g17550
rosa_chinensis RchiOBHm_Chr7g0183061
rosa_laevigata RLG00000005082
rosa_multiflora Rmu_sc0000014.1_g000003
rosa_roxburghii Rroxscaffold_3G00270800
rosa_rugosa Rorug06G0452200 Rorug06G0452300
rosa_samantha Rh7AG055700 Rh7BG055000 Rh7CG056400 Rh7DG055200
rosa_wichuraiana Rw7G004530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 373, 524
AccB7I CCANNNNNTGG 1 cut(s) 258
AccI GTMKAC 2 cut(s) 63, 248
AciI CCGC 1 cut(s) 886
AclWI GGATC 2 cut(s) 590, 603
AcsI RAATTY 2 cut(s) 601, 788
AcuI CTGAAG 1 cut(s) 747
AfaI GTAC 3 cut(s) 141, 324, 662
AfiI CCNNNNNNNGG 2 cut(s) 258, 885
AgeI ACCGGT 1 cut(s) 203
AgsI TTSAA 5 cut(s) 266, 389, 557, 808, 914
AjnI CCWGG 5 cut(s) 90, 193, 445, 712, 737
AluBI AGCT 2 cut(s) 191, 761
AluI AGCT 2 cut(s) 191, 761
Alw21I GWGCWC 1 cut(s) 712
Alw44I GTGCAC 1 cut(s) 708
AlwI GGATC 2 cut(s) 590, 603
AoxI GGCC 4 cut(s) 88, 399, 699, 887
ApaLI GTGCAC 1 cut(s) 708
ApeKI GCWGC 4 cut(s) 155, 492, 687, 729
ApoI RAATTY 2 cut(s) 601, 788
AsiGI ACCGGT 1 cut(s) 203
AspLEI GCGC 1 cut(s) 301
AspS9I GGNCC 2 cut(s) 88, 699
AsuHPI GGTGA 1 cut(s) 193
AsuNHI GCTAGC 1 cut(s) 845
BaeGI GKGCMC 1 cut(s) 712
BamHI GGATCC 1 cut(s) 595
BarI GAAGNNNNNNTAC 2 cut(s) 569, 601
Bbv12I GWGCWC 1 cut(s) 712
BbvI GCAGC 4 cut(s) 167, 479, 699, 741
BccI CCATC 2 cut(s) 155, 391
BciT130I CCWGG 5 cut(s) 92, 195, 447, 714, 739
BciVI GTATCC 1 cut(s) 461
BfaI CTAG 2 cut(s) 638, 846
BfuAI ACCTGC 2 cut(s) 373, 524
BfuI GTATCC 1 cut(s) 461
BisI GCNGC 5 cut(s) 156, 493, 688, 730, 887
BlsI GCNGC 5 cut(s) 157, 494, 689, 731, 888
Bme1390I CCNGG 5 cut(s) 92, 195, 447, 714, 739
BmgT120I GGNCC 2 cut(s) 88, 699
BmiI GGNNCC 1 cut(s) 597
BmrFI CCNGG 5 cut(s) 92, 195, 447, 714, 739
BmrI ACTGGG 1 cut(s) 483
BmsI GCATC 4 cut(s) 42, 64, 667, 741
BmtI GCTAGC 1 cut(s) 849
BmuI ACTGGG 1 cut(s) 483
BpmI CTGGAG 4 cut(s) 51, 177, 240, 333
BpuEI CTTGAG 1 cut(s) 305
BsaAI YACGTR 1 cut(s) 326
BsaJI CCNNGG 2 cut(s) 713, 737
BsaWI WCCGGW 2 cut(s) 58, 203
BsaXI ACNNNNNCTCC 5 cut(s) 29, 306, 336, 851, 881
Bsc4I CCNNNNNNNGG 2 cut(s) 258, 885
Bse118I RCCGGY 1 cut(s) 203
Bse1I ACTGG 2 cut(s) 223, 478
Bse3DI GCAATG 1 cut(s) 306
BseBI CCWGG 5 cut(s) 92, 195, 447, 714, 739
BseDI CCNNGG 2 cut(s) 713, 737
BseGI GGATG 5 cut(s) 55, 274, 682, 723, 732
BseLI CCNNNNNNNGG 2 cut(s) 258, 885
BseMI GCAATG 1 cut(s) 306
BseMII CTCAG 1 cut(s) 808
BseNI ACTGG 2 cut(s) 223, 478
BseSI GKGCMC 1 cut(s) 712
BseXI GCAGC 4 cut(s) 167, 479, 699, 741
Bsh1285I CGRYCG 1 cut(s) 63
BshFI GGCC 4 cut(s) 90, 401, 701, 889
BshTI ACCGGT 1 cut(s) 203
BsiEI CGRYCG 1 cut(s) 63
BsiHKAI GWGCWC 1 cut(s) 712
BsiSI CCGG 3 cut(s) 59, 204, 879
BslFI GGGAC 1 cut(s) 303
BslI CCNNNNNNNGG 2 cut(s) 258, 885
BsmFI GGGAC 1 cut(s) 303
BsmI GAATGC 1 cut(s) 81
BsnI GGCC 4 cut(s) 90, 401, 701, 889
Bsp1286I GDGCHC 1 cut(s) 712
Bsp1407I TGTACA 1 cut(s) 660
Bsp143I GATC 1 cut(s) 595
BspACI CCGC 1 cut(s) 886
BspANI GGCC 4 cut(s) 90, 401, 701, 889
BspCNI CTCAG 1 cut(s) 807
BspHI TCATGA 1 cut(s) 420
BspLI GGNNCC 1 cut(s) 597
BspMI ACCTGC 2 cut(s) 373, 524
BspOI GCTAGC 1 cut(s) 849
BspPI GGATC 2 cut(s) 590, 603
BspQI GCTCTTC 1 cut(s) 116
BsrDI GCAATG 1 cut(s) 306
BsrFI RCCGGY 1 cut(s) 203
BsrGI TGTACA 1 cut(s) 660
BsrI ACTGG 2 cut(s) 223, 478
BssAI RCCGGY 1 cut(s) 203
BssECI CCNNGG 2 cut(s) 713, 737
BssMI GATC 1 cut(s) 595
Bst2UI CCWGG 5 cut(s) 92, 195, 447, 714, 739
Bst4CI ACNGT 1 cut(s) 70
Bst6I CTCTTC 1 cut(s) 116
BstAPI GCANNNNNTGC 1 cut(s) 379
BstAUI TGTACA 1 cut(s) 660
BstBAI YACGTR 1 cut(s) 326
BstC8I GCNNGC 5 cut(s) 380, 490, 633, 847, 884
BstDEI CTNAG 2 cut(s) 518, 794
BstF5I GGATG 5 cut(s) 55, 274, 682, 723, 732
BstHHI GCGC 1 cut(s) 301
BstKTI GATC 1 cut(s) 598
BstMBI GATC 1 cut(s) 595
BstMCI CGRYCG 1 cut(s) 63
BstMWI GCNNNNNNNGC 5 cut(s) 87, 152, 221, 379, 707
BstNI CCWGG 5 cut(s) 92, 195, 447, 714, 739
BstNSI RCATGY 2 cut(s) 382, 853
BstSCI CCNGG 5 cut(s) 90, 193, 445, 712, 737
BstSLI GKGCMC 1 cut(s) 712
BstV1I GCAGC 4 cut(s) 167, 479, 699, 741
BstX2I RGATCY 1 cut(s) 595
BstXI CCANNNNNNTGG 1 cut(s) 461
BstYI RGATCY 1 cut(s) 595
BsuI GTATCC 1 cut(s) 461
BsuRI GGCC 4 cut(s) 90, 401, 701, 889
BtsCI GGATG 5 cut(s) 55, 274, 682, 723, 732
BtsIMutI CAGTG 1 cut(s) 861
BveI ACCTGC 2 cut(s) 373, 524
Cac8I GCNNGC 5 cut(s) 380, 490, 633, 847, 884
CciI TCATGA 1 cut(s) 420
CfoI GCGC 1 cut(s) 301
Cfr10I RCCGGY 1 cut(s) 203
Cfr13I GGNCC 2 cut(s) 88, 699
Csp6I GTAC 3 cut(s) 140, 323, 661
CspAI ACCGGT 1 cut(s) 203
CviAII CATG 6 cut(s) 357, 379, 421, 485, 747, 850
CviQI GTAC 3 cut(s) 140, 323, 661
DdeI CTNAG 2 cut(s) 518, 794
DpnI GATC 1 cut(s) 597
DpnII GATC 1 cut(s) 595
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
Eco57I CTGAAG 1 cut(s) 747
EcoRII CCWGG 5 cut(s) 90, 193, 445, 712, 737
EcoT22I ATGCAT 2 cut(s) 57, 135
FaeI CATG 6 cut(s) 360, 382, 424, 488, 750, 853
FaqI GGGAC 1 cut(s) 303
FatI CATG 6 cut(s) 356, 378, 420, 484, 746, 849
FauNDI CATATG 1 cut(s) 135
FblI GTMKAC 2 cut(s) 63, 248
Fnu4HI GCNGC 5 cut(s) 156, 493, 688, 730, 887
FokI GGATG 5 cut(s) 42, 261, 689, 719, 730
Fsp4HI GCNGC 5 cut(s) 156, 493, 688, 730, 887
FspBI CTAG 2 cut(s) 638, 846
GlaI GCGC 1 cut(s) 300
GluI GCNGC 5 cut(s) 156, 493, 688, 730, 887
GsuI CTGGAG 4 cut(s) 51, 177, 240, 333
HaeIII GGCC 4 cut(s) 90, 401, 701, 889
HapII CCGG 3 cut(s) 59, 204, 879
HhaI GCGC 1 cut(s) 301
Hin1II CATG 6 cut(s) 360, 382, 424, 488, 750, 853
Hin6I GCGC 1 cut(s) 299
HinP1I GCGC 1 cut(s) 299
HincII GTYRAC 2 cut(s) 64, 249
HindII GTYRAC 2 cut(s) 64, 249
HinfI GANTC 2 cut(s) 245, 269
HpaII CCGG 3 cut(s) 59, 204, 879
HphI GGTGA 1 cut(s) 193
Hpy166II GTNNAC 3 cut(s) 64, 249, 710
Hpy188I TCNGA 3 cut(s) 114, 725, 797
Hpy188III TCNNGA 1 cut(s) 421
Hpy8I GTNNAC 3 cut(s) 64, 249, 710
HpyAV CCTTC 4 cut(s) 38, 418, 698, 806
HpyCH4III ACNGT 1 cut(s) 70
HpyCH4IV ACGT 2 cut(s) 325, 773
HpyF10VI GCNNNNNNNGC 5 cut(s) 87, 152, 221, 379, 707
HpyF3I CTNAG 2 cut(s) 518, 794
HpySE526I ACGT 2 cut(s) 325, 773
Hsp92II CATG 6 cut(s) 360, 382, 424, 488, 750, 853
HspAI GCGC 1 cut(s) 299
Kzo9I GATC 1 cut(s) 595
LguI GCTCTTC 1 cut(s) 116
LmnI GCTCC 4 cut(s) 32, 196, 221, 314
Lsp1109I GCAGC 4 cut(s) 167, 479, 699, 741
LweI GCATC 4 cut(s) 42, 64, 667, 741
MaeI CTAG 2 cut(s) 638, 846
MaeII ACGT 2 cut(s) 325, 773
MaeIII GTNAC 2 cut(s) 199, 464
MalI GATC 1 cut(s) 597
MboI GATC 1 cut(s) 595
MboII GAAGA 2 cut(s) 133, 278
MflI RGATCY 1 cut(s) 595
MhlI GDGCHC 1 cut(s) 712
MluCI AATT 3 cut(s) 601, 681, 788
MlyI GAGTC 1 cut(s) 254
MmeI TCCRAC 1 cut(s) 654
MnlI CCTC 9 cut(s) 164, 280, 412, 515, 635, 690, 719, 886, 900
Mph1103I ATGCAT 2 cut(s) 57, 135
MslI CAYNNNNRTG 1 cut(s) 854
MspI CCGG 3 cut(s) 59, 204, 879
MspR9I CCNGG 5 cut(s) 92, 195, 447, 714, 739
Mva1269I GAATGC 1 cut(s) 81
MvaI CCWGG 5 cut(s) 92, 195, 447, 714, 739
MwoI GCNNNNNNNGC 5 cut(s) 87, 152, 221, 379, 707
NdeI CATATG 1 cut(s) 135
NdeII GATC 1 cut(s) 595
NheI GCTAGC 1 cut(s) 845
NlaIII CATG 6 cut(s) 360, 382, 424, 488, 750, 853
NlaIV GGNNCC 1 cut(s) 597
NmeAIII GCCGAG 1 cut(s) 860
NmuCI GTSAC 1 cut(s) 199
NsiI ATGCAT 2 cut(s) 57, 135
NspI RCATGY 2 cut(s) 382, 853
PaeI GCATGC 1 cut(s) 382
PagI TCATGA 1 cut(s) 420
PciSI GCTCTTC 1 cut(s) 116
PctI GAATGC 1 cut(s) 81
PfeI GAWTC 1 cut(s) 269
PflMI CCANNNNNTGG 1 cut(s) 258
PinAI ACCGGT 1 cut(s) 203
PkrI GCNGC 5 cut(s) 157, 494, 689, 731, 888
PleI GAGTC 1 cut(s) 253
PpsI GAGTC 1 cut(s) 253
Ppu21I YACGTR 1 cut(s) 326
Psp6I CCWGG 5 cut(s) 90, 193, 445, 712, 737
PspGI CCWGG 5 cut(s) 90, 193, 445, 712, 737
PspN4I GGNNCC 1 cut(s) 597
PspPI GGNCC 2 cut(s) 88, 699
PsuI RGATCY 1 cut(s) 595
RsaI GTAC 3 cut(s) 141, 324, 662
RsaNI GTAC 3 cut(s) 140, 323, 661
RseI CAYNNNNRTG 1 cut(s) 854
SalI GTCGAC 2 cut(s) 62, 247
SapI GCTCTTC 1 cut(s) 116
SatI GCNGC 5 cut(s) 156, 493, 688, 730, 887
Sau3AI GATC 1 cut(s) 595
Sau96I GGNCC 2 cut(s) 88, 699
SchI GAGTC 1 cut(s) 254
ScrFI CCNGG 5 cut(s) 92, 195, 447, 714, 739
SduI GDGCHC 1 cut(s) 712
SetI ASST 9 cut(s) 193, 199, 328, 387, 538, 709, 763, 776, 878
SfaNI GCATC 4 cut(s) 42, 64, 667, 741
SmiMI CAYNNNNRTG 1 cut(s) 854
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
SphI GCATGC 1 cut(s) 382
Sse9I AATT 3 cut(s) 601, 681, 788
SsiI CCGC 1 cut(s) 886
SspMI CTAG 2 cut(s) 638, 846
StyD4I CCNGG 5 cut(s) 90, 193, 445, 712, 737
TaaI ACNGT 1 cut(s) 70
TaiI ACGT 2 cut(s) 328, 776
TaqI TCGA 3 cut(s) 63, 243, 248
TasI AATT 3 cut(s) 601, 681, 788
TatI WGTACW 1 cut(s) 660
TauI GCSGC 1 cut(s) 889
TfiI GAWTC 1 cut(s) 269
TscAI CASTG 1 cut(s) 861
TseFI GTSAC 1 cut(s) 199
TseI GCWGC 4 cut(s) 155, 492, 687, 729
Tsp45I GTSAC 1 cut(s) 199
TspDTI ATGAA 4 cut(s) 295, 383, 437, 455
TspRI CASTG 1 cut(s) 861
Van91I CCANNNNNTGG 1 cut(s) 258
VneI GTGCAC 1 cut(s) 708
XapI RAATTY 2 cut(s) 601, 788
XceI RCATGY 2 cut(s) 382, 853
XmiI GTMKAC 2 cut(s) 63, 248
XspI CTAG 2 cut(s) 638, 846
Zsp2I ATGCAT 2 cut(s) 57, 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.