Rh7BG055000

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0010862
Physical Location & Seq
Reverse (-)
3689287 .. 3692791
3505 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG055000.1

Sequence Viewer

Length: 1101 bp
ATGAGCTCGACCTCGAGCGAAGCACACGCTCTAAGCACCACGACTCAGAAAAGCTCCTCCCCAGCAAAACAAACTCACCACAACTTCTTCGTTTGGAGAGAATTTCTATGGGGAGGAATTGCTGGGGCTTTTGGGGAAGGAATGATGCATCCCATCGACACCGTAAAGACTCGTATTCAAAGCCAAGCTATTTTCAGTGCAAGTCAGCACCAAAAGAACATACTGCAGATGGTACGAACGGTTTGGGCTGTTGATGGATTAAAGGGTTTCTATAGAGGCATAGCTCCTGGTGTCACTGGTTCTCTTGCAACTGGAGCAACATATTTTGGTGTCATAGAATCAACCAAAAACTGGATTGAAGAATCACATCCAAACCTTGGGGGACATTGGGCGCATTTCATTGCTGGAGCAGTTGGAGATACACTTGGTTCTTTTGTATATGTTCCATGTGAAGTGATGAAGCAACGCATGCAGGTTCAAGGGACAAAGGCTTCTTGGAGTTCTGTTATGCTGAAAGATAATATCTCTATGAAGCCTGGTATCCAAATGTATGATTACTATACAGGGATGTTCCAGGCAGGCTGCTCAATATGGAAGGAGCAGGGGCCAAGAGGATTATATGCAGGATTCGGGTCAACACTTGCTAGGGATGTGCCTTTTGCGGGTCTGATGGTCATGTTCTATGAAGGCTTGAAAGATTTGACAGAGTATGGGAAGAAAAAGTACGTACGCAATCCGAATTTCCATATTAATAGTTCCTTGGAGGGACTTGTCCTAGGAGGATTGGCTGGTGGCATGAGTTCTTATCTTACCACTCCCTTCGATGTGATCAAGACAAGATTGCAAGTACAGGGATCAGCGTTGAGGTATAACGGCTGGTGGGATGCATTGCAAAGTATATGGATGACTGAAGGTGCAAAGGGATTGTTCAGAGGTAGCATCCCCAGGATTACATGGTATATTCCAGCTTCAGCTCTTACATTTATGGCTGTGGAGTTTCTCAGAGACCATTTTAATGAAGGAGTGAGCATTGATAGCGTGCAAGAAGTTGCTAGCTTGACAGTAGATAAAAAGAATTCACCTTTACAAGGTTCGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF647 Mito_carr

Protein Analysis

366

Amino Acids

40.27

Weight (kDa)

9.01

Isoelectric Point (pI)

38.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 30 - 121 7.1e-22 Mitochondrial carrier protein
Mito_carr PF00153 130 - 235 9.3e-18 Mitochondrial carrier protein
Mito_carr PF00153 253 - 340 5.6e-23 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010862)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74240 AT1G74240
fragaria_vesca FvH4_5g13870 FvH4_5g13870 FvH4_5g13870
malus_domestica MD06G1202800.v1.1 MD14G1211900.v1.1
prunus_persica Prupe.5G204700_v2.0.a1
pyrus_communis pycom14g17550
rosa_chinensis RchiOBHm_Chr7g0183061
rosa_laevigata RLG00000005082
rosa_multiflora Rmu_sc0000014.1_g000003
rosa_roxburghii Rroxscaffold_3G00270800
rosa_rugosa Rorug06G0452200 Rorug06G0452300
rosa_samantha Rh7AG055700 Rh7BG055000 Rh7CG056400 Rh7DG055200
rosa_wichuraiana Rw7G004530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 463
AccB7I CCANNNNNTGG 2 cut(s) 351, 377
AciI CCGC 1 cut(s) 662
AclWI GGATC 1 cut(s) 862
AcsI RAATTY 3 cut(s) 101, 739, 1075
AcuI CTGAAG 2 cut(s) 930, 954
AfaI GTAC 4 cut(s) 234, 725, 729, 849
AfiI CCNNNNNNNGG 4 cut(s) 351, 377, 662, 1088
AgsI TTSAA 4 cut(s) 179, 359, 479, 694
AjnI CCWGG 4 cut(s) 286, 535, 573, 944
AluBI AGCT 7 cut(s) 6, 54, 188, 284, 968, 974, 1056
AluI AGCT 7 cut(s) 6, 54, 188, 284, 968, 974, 1056
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 1 cut(s) 999
AlwI GGATC 1 cut(s) 862
Ama87I CYCGRG 1 cut(s) 13
AoxI GGCC 1 cut(s) 605
ApeKI GCWGC 1 cut(s) 582
ApoI RAATTY 3 cut(s) 101, 739, 1075
AseI ATTAAT 1 cut(s) 750
AspA2I CCTAGG 1 cut(s) 775
AspLEI GCGC 1 cut(s) 394
AspS9I GGNCC 1 cut(s) 605
AsuHPI GGTGA 2 cut(s) 68, 1071
AsuNHI GCTAGC 1 cut(s) 1052
AvaI CYCGRG 1 cut(s) 13
AvrII CCTAGG 1 cut(s) 775
BanII GRGCYC 1 cut(s) 8
BarI GAAGNNNNNNTAC 2 cut(s) 707, 739
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 1 cut(s) 569
BccI CCATC 4 cut(s) 161, 223, 248, 664
BceAI ACGGC 1 cut(s) 889
BciT130I CCWGG 4 cut(s) 288, 537, 575, 946
BciVI GTATCC 1 cut(s) 551
BclI TGATCA 1 cut(s) 828
BcoDI GTCTC 1 cut(s) 999
BfaI CTAG 3 cut(s) 645, 776, 1053
BfmI CTRYAG 2 cut(s) 224, 271
BfuAI ACCTGC 1 cut(s) 463
BfuI GTATCC 1 cut(s) 551
BisI GCNGC 1 cut(s) 583
BlnI CCTAGG 1 cut(s) 775
BlsI GCNGC 1 cut(s) 584
Bme1390I CCNGG 4 cut(s) 288, 537, 575, 946
BmeT110I CYCGRG 1 cut(s) 13
BmgT120I GGNCC 1 cut(s) 605
BmiI GGNNCC 1 cut(s) 606
BmrFI CCNGG 4 cut(s) 288, 537, 575, 946
BmsI GCATC 4 cut(s) 135, 157, 874, 948
BmtI GCTAGC 1 cut(s) 1056
BpmI CTGGAG 2 cut(s) 333, 426
BsaAI YACGTR 1 cut(s) 727
BsaI GGTCTC 1 cut(s) 999
BsaJI CCNNGG 4 cut(s) 376, 759, 775, 944
Bsc4I CCNNNNNNNGG 4 cut(s) 351, 377, 662, 1088
Bse1I ACTGG 3 cut(s) 301, 316, 356
Bse3DI GCAATG 2 cut(s) 399, 887
BseBI CCWGG 4 cut(s) 288, 537, 575, 946
BseDI CCNNGG 4 cut(s) 376, 759, 775, 944
BseGI GGATG 7 cut(s) 148, 367, 573, 655, 889, 909, 939
BseLI CCNNNNNNNGG 4 cut(s) 351, 377, 662, 1088
BseMI GCAATG 2 cut(s) 399, 887
BseMII CTCAG 2 cut(s) 59, 1015
BseNI ACTGG 3 cut(s) 301, 316, 356
BseRI GAGGAG 1 cut(s) 46
BseXI GCAGC 1 cut(s) 569
BseYI CCCAGC 2 cut(s) 61, 122
BshFI GGCC 1 cut(s) 607
BsiHKAI GWGCWC 1 cut(s) 8
BsiHKCI CYCGRG 1 cut(s) 13
BsiWI CGTACG 1 cut(s) 727
BslFI GGGAC 3 cut(s) 396, 496, 780
BslI CCNNNNNNNGG 4 cut(s) 351, 377, 662, 1088
BsmAI GTCTC 1 cut(s) 999
BsmFI GGGAC 3 cut(s) 396, 496, 780
BsnI GGCC 1 cut(s) 607
Bso31I GGTCTC 1 cut(s) 999
BsoBI CYCGRG 1 cut(s) 13
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 2 cut(s) 828, 854
BspACI CCGC 1 cut(s) 662
BspANI GGCC 1 cut(s) 607
BspCNI CTCAG 2 cut(s) 58, 1014
BspLI GGNNCC 1 cut(s) 606
BspMAI CTGCAG 1 cut(s) 228
BspMI ACCTGC 1 cut(s) 463
BspOI GCTAGC 1 cut(s) 1056
BspPI GGATC 1 cut(s) 862
BspTNI GGTCTC 1 cut(s) 999
BsrDI GCAATG 2 cut(s) 399, 887
BsrI ACTGG 3 cut(s) 301, 316, 356
BssECI CCNNGG 4 cut(s) 376, 759, 775, 944
BssMI GATC 2 cut(s) 828, 854
BssT1I CCWWGG 3 cut(s) 376, 759, 775
Bst2UI CCWGG 4 cut(s) 288, 537, 575, 946
Bst4CI ACNGT 3 cut(s) 163, 241, 1063
BstAPI GCANNNNNTGC 1 cut(s) 469
BstBAI YACGTR 1 cut(s) 727
BstC8I GCNNGC 4 cut(s) 470, 580, 1040, 1054
BstDEI CTNAG 3 cut(s) 32, 45, 1001
BstENI CCTNNNNNAGG 1 cut(s) 1086
BstF5I GGATG 7 cut(s) 148, 367, 573, 655, 889, 909, 939
BstHHI GCGC 1 cut(s) 394
BstKTI GATC 2 cut(s) 831, 857
BstMAI GTCTC 1 cut(s) 999
BstMBI GATC 2 cut(s) 828, 854
BstMWI GCNNNNNNNGC 3 cut(s) 314, 469, 1035
BstNI CCWGG 4 cut(s) 288, 537, 575, 946
BstNSI RCATGY 1 cut(s) 472
BstSCI CCNGG 4 cut(s) 286, 535, 573, 944
BstSFI CTRYAG 2 cut(s) 224, 271
BstSNI TACGTA 1 cut(s) 727
BstV1I GCAGC 1 cut(s) 569
BsuI GTATCC 1 cut(s) 551
BsuRI GGCC 1 cut(s) 607
BtsCI GGATG 7 cut(s) 148, 367, 573, 655, 889, 909, 939
BtsIMutI CAGTG 2 cut(s) 202, 294
BveI ACCTGC 1 cut(s) 463
Cac8I GCNNGC 4 cut(s) 470, 580, 1040, 1054
CfoI GCGC 1 cut(s) 394
Cfr13I GGNCC 1 cut(s) 605
Csp6I GTAC 4 cut(s) 233, 724, 728, 848
CviAII CATG 5 cut(s) 447, 469, 676, 796, 954
CviQI GTAC 4 cut(s) 233, 724, 728, 848
DdeI CTNAG 3 cut(s) 32, 45, 1001
DpnI GATC 2 cut(s) 830, 856
DpnII GATC 2 cut(s) 828, 854
Ecl136II GAGCTC 1 cut(s) 6
Eco105I TACGTA 1 cut(s) 727
Eco130I CCWWGG 3 cut(s) 376, 759, 775
Eco24I GRGCYC 1 cut(s) 8
Eco31I GGTCTC 1 cut(s) 999
Eco53kI GAGCTC 1 cut(s) 6
Eco57I CTGAAG 2 cut(s) 930, 954
Eco88I CYCGRG 1 cut(s) 13
EcoICRI GAGCTC 1 cut(s) 6
EcoNI CCTNNNNNAGG 1 cut(s) 1086
EcoRI GAATTC 1 cut(s) 1075
EcoRII CCWGG 4 cut(s) 286, 535, 573, 944
EcoT14I CCWWGG 3 cut(s) 376, 759, 775
EcoT22I ATGCAT 2 cut(s) 150, 889
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 3 cut(s) 376, 759, 775
FaeI CATG 5 cut(s) 450, 472, 679, 799, 957
FaqI GGGAC 3 cut(s) 396, 496, 780
FatI CATG 5 cut(s) 446, 468, 675, 795, 953
FauI CCCGC 1 cut(s) 655
FbaI TGATCA 1 cut(s) 828
Fnu4HI GCNGC 1 cut(s) 583
FokI GGATG 7 cut(s) 135, 354, 580, 662, 896, 916, 926
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 1 cut(s) 583
FspBI CTAG 3 cut(s) 645, 776, 1053
GlaI GCGC 1 cut(s) 393
GluI GCNGC 1 cut(s) 583
GsaI CCCAGC 2 cut(s) 65, 126
GsuI CTGGAG 2 cut(s) 333, 426
HaeIII GGCC 1 cut(s) 607
HhaI GCGC 1 cut(s) 394
Hin1II CATG 5 cut(s) 450, 472, 679, 799, 957
Hin6I GCGC 1 cut(s) 392
HinP1I GCGC 1 cut(s) 392
HincII GTYRAC 1 cut(s) 636
HindII GTYRAC 1 cut(s) 636
HinfI GANTC 5 cut(s) 43, 169, 338, 362, 627
HphI GGTGA 2 cut(s) 68, 1071
Hpy166II GTNNAC 1 cut(s) 636
Hpy188I TCNGA 5 cut(s) 48, 669, 738, 932, 1004
Hpy188III TCNNGA 1 cut(s) 832
Hpy8I GTNNAC 1 cut(s) 636
HpyAV CCTTC 6 cut(s) 131, 589, 680, 829, 905, 1013
HpyCH4III ACNGT 3 cut(s) 163, 241, 1063
HpyCH4IV ACGT 1 cut(s) 726
HpyF10VI GCNNNNNNNGC 3 cut(s) 314, 469, 1035
HpyF3I CTNAG 3 cut(s) 32, 45, 1001
HpySE526I ACGT 1 cut(s) 726
Hsp92II CATG 5 cut(s) 450, 472, 679, 799, 957
HspAI GCGC 1 cut(s) 392
Ksp22I TGATCA 1 cut(s) 828
Kzo9I GATC 2 cut(s) 828, 854
LmnI GCTCC 5 cut(s) 59, 289, 314, 407, 598
Lsp1109I GCAGC 1 cut(s) 569
LweI GCATC 4 cut(s) 135, 157, 874, 948
MaeI CTAG 3 cut(s) 645, 776, 1053
MaeII ACGT 1 cut(s) 726
MaeIII GTNAC 1 cut(s) 292
MalI GATC 2 cut(s) 830, 856
MboI GATC 2 cut(s) 828, 854
MboII GAAGA 3 cut(s) 79, 371, 727
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 4 cut(s) 101, 117, 739, 1075
MlyI GAGTC 2 cut(s) 37, 163
MmeI TCCRAC 1 cut(s) 394
MnlI CCTC 9 cut(s) 22, 67, 107, 269, 605, 757, 773, 858, 926
Mph1103I ATGCAT 2 cut(s) 150, 889
MseI TTAA 4 cut(s) 260, 750, 1014, 1099
MslI CAYNNNNRTG 1 cut(s) 1014
MspR9I CCNGG 4 cut(s) 288, 537, 575, 946
MvaI CCWGG 4 cut(s) 288, 537, 575, 946
MwoI GCNNNNNNNGC 3 cut(s) 314, 469, 1035
NdeII GATC 2 cut(s) 828, 854
NheI GCTAGC 1 cut(s) 1052
NlaIII CATG 5 cut(s) 450, 472, 679, 799, 957
NlaIV GGNNCC 1 cut(s) 606
NmuCI GTSAC 1 cut(s) 292
NsiI ATGCAT 2 cut(s) 150, 889
NspI RCATGY 1 cut(s) 472
PaeI GCATGC 1 cut(s) 472
PaeR7I CTCGAG 1 cut(s) 13
PfeI GAWTC 3 cut(s) 338, 362, 627
Pfl23II CGTACG 1 cut(s) 727
PflMI CCANNNNNTGG 2 cut(s) 351, 377
PkrI GCNGC 1 cut(s) 584
PleI GAGTC 2 cut(s) 37, 163
PpsI GAGTC 2 cut(s) 37, 163
Ppu21I YACGTR 1 cut(s) 727
PshBI ATTAAT 1 cut(s) 750
Psp124BI GAGCTC 1 cut(s) 8
Psp6I CCWGG 4 cut(s) 286, 535, 573, 944
PspFI CCCAGC 2 cut(s) 61, 122
PspGI CCWGG 4 cut(s) 286, 535, 573, 944
PspLI CGTACG 1 cut(s) 727
PspN4I GGNNCC 1 cut(s) 606
PspPI GGNCC 1 cut(s) 605
PspXI VCTCGAGB 1 cut(s) 13
PstI CTGCAG 1 cut(s) 228
RsaI GTAC 4 cut(s) 234, 725, 729, 849
RsaNI GTAC 4 cut(s) 233, 724, 728, 848
RseI CAYNNNNRTG 1 cut(s) 1014
SacI GAGCTC 1 cut(s) 8
SaqAI TTAA 4 cut(s) 260, 750, 1014, 1099
SatI GCNGC 1 cut(s) 583
Sau3AI GATC 2 cut(s) 828, 854
Sau96I GGNCC 1 cut(s) 605
SchI GAGTC 2 cut(s) 37, 163
ScrFI CCNGG 4 cut(s) 288, 537, 575, 946
SduI GDGCHC 1 cut(s) 8
SfaNI GCATC 4 cut(s) 135, 157, 874, 948
SfcI CTRYAG 2 cut(s) 224, 271
Sfr274I CTCGAG 1 cut(s) 13
SlaI CTCGAG 1 cut(s) 13
SmiMI CAYNNNNRTG 1 cut(s) 1014
SmlI CTYRAG 1 cut(s) 13
SmoI CTYRAG 1 cut(s) 13
SnaBI TACGTA 1 cut(s) 727
SphI GCATGC 1 cut(s) 472
Sse9I AATT 4 cut(s) 101, 117, 739, 1075
SsiI CCGC 1 cut(s) 662
SspMI CTAG 3 cut(s) 645, 776, 1053
SstI GAGCTC 1 cut(s) 8
StyD4I CCNGG 4 cut(s) 286, 535, 573, 944
StyI CCWWGG 3 cut(s) 376, 759, 775
TaaI ACNGT 3 cut(s) 163, 241, 1063
TaiI ACGT 1 cut(s) 729
TaqI TCGA 4 cut(s) 8, 14, 156, 822
TasI AATT 4 cut(s) 101, 117, 739, 1075
TatI WGTACW 1 cut(s) 847
TfiI GAWTC 3 cut(s) 338, 362, 627
Tru1I TTAA 4 cut(s) 260, 750, 1014, 1099
Tru9I TTAA 4 cut(s) 260, 750, 1014, 1099
TscAI CASTG 2 cut(s) 202, 301
TseFI GTSAC 1 cut(s) 292
TseI GCWGC 1 cut(s) 582
Tsp45I GTSAC 1 cut(s) 292
TspDTI ATGAA 5 cut(s) 388, 473, 545, 699, 1032
TspRI CASTG 2 cut(s) 202, 301
Van91I CCANNNNNTGG 2 cut(s) 351, 377
VspI ATTAAT 1 cut(s) 750
XagI CCTNNNNNAGG 1 cut(s) 1086
XapI RAATTY 3 cut(s) 101, 739, 1075
XceI RCATGY 1 cut(s) 472
XhoI CTCGAG 1 cut(s) 13
XmaJI CCTAGG 1 cut(s) 775
XspI CTAG 3 cut(s) 645, 776, 1053
Zsp2I ATGCAT 2 cut(s) 150, 889
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.