Rh7CG056400

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0010862
Physical Location & Seq
Reverse (-)
4133250 .. 4137165
3916 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG056400.1

Sequence Viewer

Length: 858 bp
ATGGCGACACAGAGCTCGACCTCGAGGGAAGCACATGCTCTAGGCACCAAGACTCAGAAAAGCTCCTCCCCAGCAAAACAAACTCACCACAACTTCTTCGTTTGGAGAGAATTTCTATGGGGAGGTATTGCTGGGGCTTTTGGGGAAGGAGTGATGCATCCCATCGACACCGTGAAGACTCGTATTCAAAGCCAAGCTATTTTCAGTGCAAGTCAGCACCAAAAGAACATACTGCAGATGGTACGAACAGTTTGGGCTGTTGATGGATTAAAGGGTTTCTATAGAGGCATAGCTCCTGGTGTCACTGGTTCTCTTGCAACTGGAGCAACATATTTTGGTGTCATAGAATCAACCAAAAACTGGATTGAAGAATCACATCCAAACCTTGGGGGACATTGGGCGCATTTCATTGCTGGAGCAGTTGGAGATACACTTGGTTCTTTTGTATATGTTCCATGTGAAGTGATGAAGCAACGCATGCAGGTTCAAGGGACAAAGGCTTCTTGGAGTTCTGTTATGCTGAAAGATAATATCTCTATGAAGCCTGGTATCCAAATGTATGATTACTATACAGGGATGTTCCAGGCAGGCTGCTCAATATGGAAGGAGCAGGGGCCAAGAGGATTATATGCAGGATTCGGGTCAACACTTGCTAGGGATGTGCCTTTTGCGGGTCTGATGGTTATGTTCTATGAAGGCTTGAAAGATTTGACAGAGTATGGGAAGAGAAAGTACGTACGCAATCCGAATTTCCATATTAATAGTTCCTTGGAGGGACTTGTCCTAGGAGGATTGGCTGGTGGTATGTGTACGTTGCTTATGTATCATCTGCTTGGTGTACATTTAAGTAATCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF647 Mito_carr

Protein Analysis

285

Amino Acids

31.29

Weight (kDa)

9.27

Isoelectric Point (pI)

37.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 33 - 124 2.1e-22 Mitochondrial carrier protein
Mito_carr PF00153 133 - 238 5.7e-18 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010862)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74240 AT1G74240
fragaria_vesca FvH4_5g13870 FvH4_5g13870 FvH4_5g13870
malus_domestica MD06G1202800.v1.1 MD14G1211900.v1.1
prunus_persica Prupe.5G204700_v2.0.a1
pyrus_communis pycom14g17550
rosa_chinensis RchiOBHm_Chr7g0183061
rosa_laevigata RLG00000005082
rosa_multiflora Rmu_sc0000014.1_g000003
rosa_roxburghii Rroxscaffold_3G00270800
rosa_rugosa Rorug06G0452200 Rorug06G0452300
rosa_samantha Rh7AG055700 Rh7BG055000 Rh7CG056400 Rh7DG055200
rosa_wichuraiana Rw7G004530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 22
Acc36I ACCTGC 1 cut(s) 472
AccB1I GGYRCC 1 cut(s) 44
AccB7I CCANNNNNTGG 2 cut(s) 360, 386
AciI CCGC 1 cut(s) 671
AcsI RAATTY 2 cut(s) 110, 748
AfaI GTAC 5 cut(s) 243, 734, 738, 811, 840
AfiI CCNNNNNNNGG 3 cut(s) 360, 386, 671
AgsI TTSAA 4 cut(s) 188, 368, 488, 703
AjnI CCWGG 3 cut(s) 295, 544, 582
AluBI AGCT 4 cut(s) 15, 63, 197, 293
AluI AGCT 4 cut(s) 15, 63, 197, 293
Alw21I GWGCWC 1 cut(s) 17
Ama87I CYCGRG 1 cut(s) 22
AoxI GGCC 1 cut(s) 614
ApeKI GCWGC 1 cut(s) 591
ApoI RAATTY 2 cut(s) 110, 748
AseI ATTAAT 1 cut(s) 759
AspA2I CCTAGG 1 cut(s) 784
AspLEI GCGC 1 cut(s) 403
AspS9I GGNCC 1 cut(s) 614
AsuHPI GGTGA 1 cut(s) 77
AvaI CYCGRG 1 cut(s) 22
AvrII CCTAGG 1 cut(s) 784
BanI GGYRCC 1 cut(s) 44
BanII GRGCYC 1 cut(s) 17
BarI GAAGNNNNNNTAC 2 cut(s) 716, 748
BbsI GAAGAC 1 cut(s) 182
Bbv12I GWGCWC 1 cut(s) 17
BbvI GCAGC 1 cut(s) 578
BccI CCATC 4 cut(s) 170, 232, 257, 673
BciT130I CCWGG 3 cut(s) 297, 546, 584
BciVI GTATCC 1 cut(s) 560
BfaI CTAG 3 cut(s) 41, 654, 785
BfmI CTRYAG 2 cut(s) 233, 280
BfuAI ACCTGC 1 cut(s) 472
BfuI GTATCC 1 cut(s) 560
BisI GCNGC 1 cut(s) 592
BlnI CCTAGG 1 cut(s) 784
BlsI GCNGC 1 cut(s) 593
Bme1390I CCNGG 3 cut(s) 297, 546, 584
BmeT110I CYCGRG 1 cut(s) 22
BmgT120I GGNCC 1 cut(s) 614
BmiI GGNNCC 2 cut(s) 46, 615
BmrFI CCNGG 3 cut(s) 297, 546, 584
BmsI GCATC 2 cut(s) 144, 166
BpiI GAAGAC 1 cut(s) 182
BpmI CTGGAG 2 cut(s) 342, 435
BsaAI YACGTR 1 cut(s) 736
BsaJI CCNNGG 3 cut(s) 385, 768, 784
Bsc4I CCNNNNNNNGG 3 cut(s) 360, 386, 671
Bse1I ACTGG 3 cut(s) 310, 325, 365
Bse3DI GCAATG 1 cut(s) 408
BseBI CCWGG 3 cut(s) 297, 546, 584
BseDI CCNNGG 3 cut(s) 385, 768, 784
BseGI GGATG 4 cut(s) 157, 376, 582, 664
BseLI CCNNNNNNNGG 3 cut(s) 360, 386, 671
BseMI GCAATG 1 cut(s) 408
BseMII CTCAG 1 cut(s) 68
BseNI ACTGG 3 cut(s) 310, 325, 365
BseRI GAGGAG 1 cut(s) 55
BseXI GCAGC 1 cut(s) 578
BseYI CCCAGC 2 cut(s) 70, 131
BshFI GGCC 1 cut(s) 616
BshNI GGYRCC 1 cut(s) 44
BsiHKAI GWGCWC 1 cut(s) 17
BsiHKCI CYCGRG 1 cut(s) 22
BsiWI CGTACG 1 cut(s) 736
BslFI GGGAC 3 cut(s) 405, 505, 789
BslI CCNNNNNNNGG 3 cut(s) 360, 386, 671
BsmFI GGGAC 3 cut(s) 405, 505, 789
BsnI GGCC 1 cut(s) 616
BsoBI CYCGRG 1 cut(s) 22
Bsp1286I GDGCHC 1 cut(s) 17
Bsp1407I TGTACA 1 cut(s) 838
BspACI CCGC 1 cut(s) 671
BspANI GGCC 1 cut(s) 616
BspCNI CTCAG 1 cut(s) 67
BspLI GGNNCC 2 cut(s) 46, 615
BspMAI CTGCAG 1 cut(s) 237
BspMI ACCTGC 1 cut(s) 472
BspT107I GGYRCC 1 cut(s) 44
BsrDI GCAATG 1 cut(s) 408
BsrGI TGTACA 1 cut(s) 838
BsrI ACTGG 3 cut(s) 310, 325, 365
BssECI CCNNGG 3 cut(s) 385, 768, 784
BssT1I CCWWGG 3 cut(s) 385, 768, 784
Bst2UI CCWGG 3 cut(s) 297, 546, 584
Bst4CI ACNGT 2 cut(s) 172, 250
Bst6I CTCTTC 1 cut(s) 719
BstAPI GCANNNNNTGC 1 cut(s) 478
BstAUI TGTACA 1 cut(s) 838
BstBAI YACGTR 1 cut(s) 736
BstC8I GCNNGC 2 cut(s) 479, 589
BstDEI CTNAG 1 cut(s) 54
BstF5I GGATG 4 cut(s) 157, 376, 582, 664
BstHHI GCGC 1 cut(s) 403
BstMWI GCNNNNNNNGC 2 cut(s) 323, 478
BstNI CCWGG 3 cut(s) 297, 546, 584
BstNSI RCATGY 2 cut(s) 38, 481
BstSCI CCNGG 3 cut(s) 295, 544, 582
BstSFI CTRYAG 2 cut(s) 233, 280
BstSNI TACGTA 1 cut(s) 736
BstV1I GCAGC 1 cut(s) 578
BstV2I GAAGAC 1 cut(s) 182
BsuI GTATCC 1 cut(s) 560
BsuRI GGCC 1 cut(s) 616
BtsCI GGATG 4 cut(s) 157, 376, 582, 664
BtsIMutI CAGTG 2 cut(s) 211, 303
BveI ACCTGC 1 cut(s) 472
Cac8I GCNNGC 2 cut(s) 479, 589
CfoI GCGC 1 cut(s) 403
Cfr13I GGNCC 1 cut(s) 614
Csp6I GTAC 5 cut(s) 242, 733, 737, 810, 839
CviAII CATG 3 cut(s) 35, 456, 478
CviQI GTAC 5 cut(s) 242, 733, 737, 810, 839
DdeI CTNAG 1 cut(s) 54
Eam1104I CTCTTC 1 cut(s) 719
EarI CTCTTC 1 cut(s) 719
Ecl136II GAGCTC 1 cut(s) 15
Eco105I TACGTA 1 cut(s) 736
Eco130I CCWWGG 3 cut(s) 385, 768, 784
Eco24I GRGCYC 1 cut(s) 17
Eco53kI GAGCTC 1 cut(s) 15
Eco88I CYCGRG 1 cut(s) 22
EcoICRI GAGCTC 1 cut(s) 15
EcoRII CCWGG 3 cut(s) 295, 544, 582
EcoT14I CCWWGG 3 cut(s) 385, 768, 784
EcoT22I ATGCAT 1 cut(s) 159
EcoT38I GRGCYC 1 cut(s) 17
ErhI CCWWGG 3 cut(s) 385, 768, 784
FaeI CATG 3 cut(s) 38, 459, 481
FaqI GGGAC 3 cut(s) 405, 505, 789
FatI CATG 3 cut(s) 34, 455, 477
FauI CCCGC 1 cut(s) 664
Fnu4HI GCNGC 1 cut(s) 592
FokI GGATG 4 cut(s) 144, 363, 589, 671
FriOI GRGCYC 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 592
FspBI CTAG 3 cut(s) 41, 654, 785
GlaI GCGC 1 cut(s) 402
GluI GCNGC 1 cut(s) 592
GsaI CCCAGC 2 cut(s) 74, 135
GsuI CTGGAG 2 cut(s) 342, 435
HaeIII GGCC 1 cut(s) 616
HhaI GCGC 1 cut(s) 403
Hin1II CATG 3 cut(s) 38, 459, 481
Hin6I GCGC 1 cut(s) 401
HinP1I GCGC 1 cut(s) 401
HincII GTYRAC 1 cut(s) 645
HindII GTYRAC 1 cut(s) 645
HinfI GANTC 5 cut(s) 52, 178, 347, 371, 636
HphI GGTGA 1 cut(s) 77
Hpy166II GTNNAC 3 cut(s) 645, 810, 839
Hpy188I TCNGA 3 cut(s) 57, 678, 747
Hpy8I GTNNAC 3 cut(s) 645, 810, 839
HpyAV CCTTC 3 cut(s) 140, 598, 689
HpyCH4III ACNGT 2 cut(s) 172, 250
HpyCH4IV ACGT 2 cut(s) 735, 812
HpyCH4V TGCA 6 cut(s) 157, 209, 235, 317, 481, 632
HpyF10VI GCNNNNNNNGC 2 cut(s) 323, 478
HpyF3I CTNAG 1 cut(s) 54
HpySE526I ACGT 2 cut(s) 735, 812
Hsp92II CATG 3 cut(s) 38, 459, 481
HspAI GCGC 1 cut(s) 401
LmnI GCTCC 5 cut(s) 68, 298, 323, 416, 607
Lsp1109I GCAGC 1 cut(s) 578
LweI GCATC 2 cut(s) 144, 166
MaeI CTAG 3 cut(s) 41, 654, 785
MaeII ACGT 2 cut(s) 735, 812
MaeIII GTNAC 1 cut(s) 301
MboII GAAGA 4 cut(s) 88, 187, 380, 736
MhlI GDGCHC 1 cut(s) 17
MluCI AATT 2 cut(s) 110, 748
MlyI GAGTC 2 cut(s) 46, 172
MmeI TCCRAC 1 cut(s) 403
MnlI CCTC 8 cut(s) 18, 31, 76, 116, 278, 614, 766, 782
Mph1103I ATGCAT 1 cut(s) 159
MseI TTAA 3 cut(s) 269, 759, 845
MspR9I CCNGG 3 cut(s) 297, 546, 584
MvaI CCWGG 3 cut(s) 297, 546, 584
MwoI GCNNNNNNNGC 2 cut(s) 323, 478
NlaIII CATG 3 cut(s) 38, 459, 481
NlaIV GGNNCC 2 cut(s) 46, 615
NmuCI GTSAC 1 cut(s) 301
NsiI ATGCAT 1 cut(s) 159
NspI RCATGY 2 cut(s) 38, 481
PaeI GCATGC 1 cut(s) 481
PaeR7I CTCGAG 1 cut(s) 22
PfeI GAWTC 3 cut(s) 347, 371, 636
Pfl23II CGTACG 1 cut(s) 736
PflMI CCANNNNNTGG 2 cut(s) 360, 386
PkrI GCNGC 1 cut(s) 593
PleI GAGTC 2 cut(s) 46, 172
PpsI GAGTC 2 cut(s) 46, 172
Ppu21I YACGTR 1 cut(s) 736
PshBI ATTAAT 1 cut(s) 759
Psp124BI GAGCTC 1 cut(s) 17
Psp6I CCWGG 3 cut(s) 295, 544, 582
PspFI CCCAGC 2 cut(s) 70, 131
PspGI CCWGG 3 cut(s) 295, 544, 582
PspLI CGTACG 1 cut(s) 736
PspN4I GGNNCC 2 cut(s) 46, 615
PspPI GGNCC 1 cut(s) 614
PspXI VCTCGAGB 1 cut(s) 22
PstI CTGCAG 1 cut(s) 237
RsaI GTAC 5 cut(s) 243, 734, 738, 811, 840
RsaNI GTAC 5 cut(s) 242, 733, 737, 810, 839
SacI GAGCTC 1 cut(s) 17
SaqAI TTAA 3 cut(s) 269, 759, 845
SatI GCNGC 1 cut(s) 592
Sau96I GGNCC 1 cut(s) 614
SchI GAGTC 2 cut(s) 46, 172
ScrFI CCNGG 3 cut(s) 297, 546, 584
SduI GDGCHC 1 cut(s) 17
SfaNI GCATC 2 cut(s) 144, 166
SfcI CTRYAG 2 cut(s) 233, 280
Sfr274I CTCGAG 1 cut(s) 22
SlaI CTCGAG 1 cut(s) 22
SmlI CTYRAG 1 cut(s) 22
SmoI CTYRAG 1 cut(s) 22
SnaBI TACGTA 1 cut(s) 736
SphI GCATGC 1 cut(s) 481
Sse9I AATT 2 cut(s) 110, 748
SsiI CCGC 1 cut(s) 671
SspMI CTAG 3 cut(s) 41, 654, 785
SstI GAGCTC 1 cut(s) 17
StyD4I CCNGG 3 cut(s) 295, 544, 582
StyI CCWWGG 3 cut(s) 385, 768, 784
TaaI ACNGT 2 cut(s) 172, 250
TaiI ACGT 2 cut(s) 738, 815
TaqI TCGA 3 cut(s) 17, 23, 165
TasI AATT 2 cut(s) 110, 748
TatI WGTACW 1 cut(s) 838
TfiI GAWTC 3 cut(s) 347, 371, 636
Tru1I TTAA 3 cut(s) 269, 759, 845
Tru9I TTAA 3 cut(s) 269, 759, 845
TscAI CASTG 2 cut(s) 211, 310
TseFI GTSAC 1 cut(s) 301
TseI GCWGC 1 cut(s) 591
Tsp45I GTSAC 1 cut(s) 301
TspDTI ATGAA 4 cut(s) 397, 482, 554, 708
TspRI CASTG 2 cut(s) 211, 310
Van91I CCANNNNNTGG 2 cut(s) 360, 386
VspI ATTAAT 1 cut(s) 759
XapI RAATTY 2 cut(s) 110, 748
XceI RCATGY 2 cut(s) 38, 481
XhoI CTCGAG 1 cut(s) 22
XmaJI CCTAGG 1 cut(s) 784
XspI CTAG 3 cut(s) 41, 654, 785
Zsp2I ATGCAT 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.