RLG00000005082

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0010862
Physical Location & Seq
Forward (+)
64867260 .. 64870732
3473 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005082

Sequence Viewer

Length: 1110 bp
ATGGCGACACAGAGCTCGACCTCGAGCGAAGCACATGCTCTAGGCACCACGACTCAGAAAAGCTCCTCCCCGGCGAAACAAACTCACCACAACTTCTTCGTTTGGAGAGAATTTCTATGGGGAGGTATTGCTGGGGCTTTTGGGGAAGGAGTGATGCATCCCATCGACACCGTAAAGACTCGTATTCAAAGCCAAGCTATTTTCAGTGCAAGTCAGCACCAAAAGAACATACTGCAGATGGTACGAACAGTTTGGGCTGTTGATGGATTAAAGGGTTTCTATAGAGGCATAGCTCCTGGTGTCACTGGTTCTCTTGCAACTGGAGCAACATATTTTGGTGTCATAGAATCAACCAAAAACTGGATTGAAGAATCACATCCAAACCTTGGGGGACATTGGGCGCATTTCATTGCTGGAGCAGTTGGAGATACACTTGGTTCTTTTGTATATGTTCCATGTGAAGTGATGAAGCAACGCATGCAGGTTCAAGGGACAAAGGCTTCTTGGAGTTCTGTTATGCTGAAAGATAATATCTCTATGAAGCCTGGTATCCAAATGTATGATTACTATACAGGGATGTTCCAGGCAGGCTGCTCAATATGGAAGGAGCAGGGGCCAAGAGGATTATATGCAGGATTCGGGTCAACACTTGCTAGGGATGTGCCTTTTGCGGGTCTGATGGTTATGTTCTATGAAGGCTTGAAAGATTTGACAGAGTATGGGAAGAAAAAGTACGTACACAATCCGAATTTCCATATTAATAGTTCCTTGGAGGGACTTGTCCTAGGAGGATTGGCTGGTGGCATGAGTTCTTATCTTACCACTCCCTTCGATGTGATCAAGACAAGATTGCAAGTACAGGGATCAGCGTTGAGGTATAACGGCTGGTGGGATGCATTGCGAAGTATATGGATGACTGAAGGTGCAAAGGGATTGTTCAGAGGTAGCATCCCCAGGATTACATGGTATATTCCAGCTTCAGCTCTTACATTTATGGCTGTGGAGTTTCTCAGAGACCATTTTAATGAAGGAGTGAGCATTGATAGTGTGCAAGAAGTTGCTAGCTTGACAGTAGATAAAAAGAATTCACCTTTACAAGGTTCGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF647 Mito_carr

Protein Analysis

370

Amino Acids

40.51

Weight (kDa)

9.01

Isoelectric Point (pI)

38.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 33 - 124 3.5e-22 Mitochondrial carrier protein
Mito_carr PF00153 133 - 238 9.5e-18 Mitochondrial carrier protein
Mito_carr PF00153 256 - 343 2.3e-23 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010862)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74240 AT1G74240
fragaria_vesca FvH4_5g13870 FvH4_5g13870 FvH4_5g13870
malus_domestica MD06G1202800.v1.1 MD14G1211900.v1.1
prunus_persica Prupe.5G204700_v2.0.a1
pyrus_communis pycom14g17550
rosa_chinensis RchiOBHm_Chr7g0183061
rosa_laevigata RLG00000005082
rosa_multiflora Rmu_sc0000014.1_g000003
rosa_roxburghii Rroxscaffold_3G00270800
rosa_rugosa Rorug06G0452200 Rorug06G0452300
rosa_samantha Rh7AG055700 Rh7BG055000 Rh7CG056400 Rh7DG055200
rosa_wichuraiana Rw7G004530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 472
AccB1I GGYRCC 1 cut(s) 44
AccB7I CCANNNNNTGG 2 cut(s) 360, 386
AciI CCGC 1 cut(s) 671
AclWI GGATC 1 cut(s) 871
AcsI RAATTY 3 cut(s) 110, 748, 1084
AcuI CTGAAG 2 cut(s) 939, 963
AfaI GTAC 4 cut(s) 243, 734, 738, 858
AfiI CCNNNNNNNGG 4 cut(s) 360, 386, 671, 1097
AgsI TTSAA 4 cut(s) 188, 368, 488, 703
AjnI CCWGG 4 cut(s) 295, 544, 582, 953
AluBI AGCT 7 cut(s) 15, 63, 197, 293, 977, 983, 1065
AluI AGCT 7 cut(s) 15, 63, 197, 293, 977, 983, 1065
Alw21I GWGCWC 1 cut(s) 17
Alw26I GTCTC 1 cut(s) 1008
AlwI GGATC 1 cut(s) 871
Ama87I CYCGRG 1 cut(s) 22
AoxI GGCC 1 cut(s) 614
ApeKI GCWGC 1 cut(s) 591
ApoI RAATTY 3 cut(s) 110, 748, 1084
AseI ATTAAT 1 cut(s) 759
AspA2I CCTAGG 1 cut(s) 784
AspLEI GCGC 1 cut(s) 403
AspS9I GGNCC 1 cut(s) 614
AsuC2I CCSGG 1 cut(s) 71
AsuHPI GGTGA 2 cut(s) 77, 1080
AsuNHI GCTAGC 1 cut(s) 1061
AvaI CYCGRG 1 cut(s) 22
AvrII CCTAGG 1 cut(s) 784
BanI GGYRCC 1 cut(s) 44
BanII GRGCYC 1 cut(s) 17
BarI GAAGNNNNNNTAC 2 cut(s) 716, 748
Bbv12I GWGCWC 1 cut(s) 17
BbvI GCAGC 1 cut(s) 578
BccI CCATC 4 cut(s) 170, 232, 257, 673
BceAI ACGGC 1 cut(s) 898
BcgI CGANNNNNNTGC 2 cut(s) 17, 51
BciT130I CCWGG 4 cut(s) 297, 546, 584, 955
BciVI GTATCC 1 cut(s) 560
BclI TGATCA 1 cut(s) 837
BcnI CCSGG 1 cut(s) 71
BcoDI GTCTC 1 cut(s) 1008
BfaI CTAG 4 cut(s) 41, 654, 785, 1062
BfmI CTRYAG 2 cut(s) 233, 280
BfuAI ACCTGC 1 cut(s) 472
BfuI GTATCC 1 cut(s) 560
BisI GCNGC 1 cut(s) 592
BlnI CCTAGG 1 cut(s) 784
BlsI GCNGC 1 cut(s) 593
Bme1390I CCNGG 5 cut(s) 71, 297, 546, 584, 955
BmeT110I CYCGRG 1 cut(s) 22
BmgT120I GGNCC 1 cut(s) 614
BmiI GGNNCC 2 cut(s) 46, 615
BmrFI CCNGG 5 cut(s) 71, 297, 546, 584, 955
BmsI GCATC 4 cut(s) 144, 166, 883, 957
BmtI GCTAGC 1 cut(s) 1065
BpmI CTGGAG 2 cut(s) 342, 435
BpuMI CCSGG 1 cut(s) 71
BsaAI YACGTR 1 cut(s) 736
BsaI GGTCTC 1 cut(s) 1008
BsaJI CCNNGG 5 cut(s) 69, 385, 768, 784, 953
Bsc4I CCNNNNNNNGG 4 cut(s) 360, 386, 671, 1097
Bse1I ACTGG 3 cut(s) 310, 325, 365
Bse3DI GCAATG 2 cut(s) 408, 896
BseBI CCWGG 4 cut(s) 297, 546, 584, 955
BseDI CCNNGG 5 cut(s) 69, 385, 768, 784, 953
BseGI GGATG 7 cut(s) 157, 376, 582, 664, 898, 918, 948
BseLI CCNNNNNNNGG 4 cut(s) 360, 386, 671, 1097
BseMI GCAATG 2 cut(s) 408, 896
BseMII CTCAG 2 cut(s) 68, 1024
BseNI ACTGG 3 cut(s) 310, 325, 365
BseRI GAGGAG 1 cut(s) 55
BseXI GCAGC 1 cut(s) 578
BseYI CCCAGC 1 cut(s) 131
BshFI GGCC 1 cut(s) 616
BshNI GGYRCC 1 cut(s) 44
BsiHKAI GWGCWC 1 cut(s) 17
BsiHKCI CYCGRG 1 cut(s) 22
BsiSI CCGG 1 cut(s) 71
BslFI GGGAC 3 cut(s) 405, 505, 789
BslI CCNNNNNNNGG 4 cut(s) 360, 386, 671, 1097
BsmAI GTCTC 1 cut(s) 1008
BsmFI GGGAC 3 cut(s) 405, 505, 789
BsnI GGCC 1 cut(s) 616
Bso31I GGTCTC 1 cut(s) 1008
BsoBI CYCGRG 1 cut(s) 22
Bsp1286I GDGCHC 1 cut(s) 17
Bsp143I GATC 2 cut(s) 837, 863
BspACI CCGC 1 cut(s) 671
BspANI GGCC 1 cut(s) 616
BspCNI CTCAG 2 cut(s) 67, 1023
BspLI GGNNCC 2 cut(s) 46, 615
BspMAI CTGCAG 1 cut(s) 237
BspMI ACCTGC 1 cut(s) 472
BspOI GCTAGC 1 cut(s) 1065
BspPI GGATC 1 cut(s) 871
BspT107I GGYRCC 1 cut(s) 44
BspTNI GGTCTC 1 cut(s) 1008
BsrDI GCAATG 2 cut(s) 408, 896
BsrI ACTGG 3 cut(s) 310, 325, 365
BssECI CCNNGG 5 cut(s) 69, 385, 768, 784, 953
BssMI GATC 2 cut(s) 837, 863
BssT1I CCWWGG 3 cut(s) 385, 768, 784
Bst2UI CCWGG 4 cut(s) 297, 546, 584, 955
Bst4CI ACNGT 3 cut(s) 172, 250, 1072
BstAPI GCANNNNNTGC 1 cut(s) 478
BstBAI YACGTR 1 cut(s) 736
BstC8I GCNNGC 3 cut(s) 479, 589, 1063
BstDEI CTNAG 2 cut(s) 54, 1010
BstENI CCTNNNNNAGG 1 cut(s) 1095
BstF5I GGATG 7 cut(s) 157, 376, 582, 664, 898, 918, 948
BstHHI GCGC 1 cut(s) 403
BstKTI GATC 2 cut(s) 840, 866
BstMAI GTCTC 1 cut(s) 1008
BstMBI GATC 2 cut(s) 837, 863
BstMWI GCNNNNNNNGC 2 cut(s) 323, 478
BstNI CCWGG 4 cut(s) 297, 546, 584, 955
BstNSI RCATGY 2 cut(s) 38, 481
BstSCI CCNGG 5 cut(s) 69, 295, 544, 582, 953
BstSFI CTRYAG 2 cut(s) 233, 280
BstSNI TACGTA 1 cut(s) 736
BstV1I GCAGC 1 cut(s) 578
BsuI GTATCC 1 cut(s) 560
BsuRI GGCC 1 cut(s) 616
BtsCI GGATG 7 cut(s) 157, 376, 582, 664, 898, 918, 948
BtsIMutI CAGTG 2 cut(s) 211, 303
BveI ACCTGC 1 cut(s) 472
Cac8I GCNNGC 3 cut(s) 479, 589, 1063
CfoI GCGC 1 cut(s) 403
Cfr13I GGNCC 1 cut(s) 614
Csp6I GTAC 4 cut(s) 242, 733, 737, 857
CviAII CATG 5 cut(s) 35, 456, 478, 805, 963
CviQI GTAC 4 cut(s) 242, 733, 737, 857
DdeI CTNAG 2 cut(s) 54, 1010
DpnI GATC 2 cut(s) 839, 865
DpnII GATC 2 cut(s) 837, 863
Ecl136II GAGCTC 1 cut(s) 15
Eco105I TACGTA 1 cut(s) 736
Eco130I CCWWGG 3 cut(s) 385, 768, 784
Eco24I GRGCYC 1 cut(s) 17
Eco31I GGTCTC 1 cut(s) 1008
Eco53kI GAGCTC 1 cut(s) 15
Eco57I CTGAAG 2 cut(s) 939, 963
Eco88I CYCGRG 1 cut(s) 22
EcoICRI GAGCTC 1 cut(s) 15
EcoNI CCTNNNNNAGG 1 cut(s) 1095
EcoRI GAATTC 1 cut(s) 1084
EcoRII CCWGG 4 cut(s) 295, 544, 582, 953
EcoT14I CCWWGG 3 cut(s) 385, 768, 784
EcoT22I ATGCAT 2 cut(s) 159, 898
EcoT38I GRGCYC 1 cut(s) 17
ErhI CCWWGG 3 cut(s) 385, 768, 784
FaeI CATG 5 cut(s) 38, 459, 481, 808, 966
FaqI GGGAC 3 cut(s) 405, 505, 789
FatI CATG 5 cut(s) 34, 455, 477, 804, 962
FauI CCCGC 1 cut(s) 664
FbaI TGATCA 1 cut(s) 837
Fnu4HI GCNGC 1 cut(s) 592
FokI GGATG 7 cut(s) 144, 363, 589, 671, 905, 925, 935
FriOI GRGCYC 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 592
FspBI CTAG 4 cut(s) 41, 654, 785, 1062
GlaI GCGC 1 cut(s) 402
GluI GCNGC 1 cut(s) 592
GsaI CCCAGC 1 cut(s) 135
GsuI CTGGAG 2 cut(s) 342, 435
HaeIII GGCC 1 cut(s) 616
HapII CCGG 1 cut(s) 71
HhaI GCGC 1 cut(s) 403
Hin1II CATG 5 cut(s) 38, 459, 481, 808, 966
Hin6I GCGC 1 cut(s) 401
HinP1I GCGC 1 cut(s) 401
HincII GTYRAC 1 cut(s) 645
HindII GTYRAC 1 cut(s) 645
HinfI GANTC 5 cut(s) 52, 178, 347, 371, 636
HpaII CCGG 1 cut(s) 71
HphI GGTGA 2 cut(s) 77, 1080
Hpy166II GTNNAC 2 cut(s) 645, 739
Hpy188I TCNGA 5 cut(s) 57, 678, 747, 941, 1013
Hpy188III TCNNGA 1 cut(s) 841
Hpy8I GTNNAC 2 cut(s) 645, 739
HpyAV CCTTC 6 cut(s) 140, 598, 689, 838, 914, 1022
HpyCH4III ACNGT 3 cut(s) 172, 250, 1072
HpyCH4IV ACGT 1 cut(s) 735
HpyF10VI GCNNNNNNNGC 2 cut(s) 323, 478
HpyF3I CTNAG 2 cut(s) 54, 1010
HpySE526I ACGT 1 cut(s) 735
Hsp92II CATG 5 cut(s) 38, 459, 481, 808, 966
HspAI GCGC 1 cut(s) 401
Ksp22I TGATCA 1 cut(s) 837
Kzo9I GATC 2 cut(s) 837, 863
LmnI GCTCC 5 cut(s) 68, 298, 323, 416, 607
Lsp1109I GCAGC 1 cut(s) 578
LweI GCATC 4 cut(s) 144, 166, 883, 957
MaeI CTAG 4 cut(s) 41, 654, 785, 1062
MaeII ACGT 1 cut(s) 735
MaeIII GTNAC 1 cut(s) 301
MalI GATC 2 cut(s) 839, 865
MboI GATC 2 cut(s) 837, 863
MboII GAAGA 3 cut(s) 88, 380, 736
MhlI GDGCHC 1 cut(s) 17
MluCI AATT 3 cut(s) 110, 748, 1084
MlyI GAGTC 2 cut(s) 46, 172
MmeI TCCRAC 1 cut(s) 403
MnlI CCTC 9 cut(s) 31, 76, 116, 278, 614, 766, 782, 867, 935
Mph1103I ATGCAT 2 cut(s) 159, 898
MseI TTAA 4 cut(s) 269, 759, 1023, 1108
MslI CAYNNNNRTG 1 cut(s) 1023
MspI CCGG 1 cut(s) 71
MspR9I CCNGG 5 cut(s) 71, 297, 546, 584, 955
MvaI CCWGG 4 cut(s) 297, 546, 584, 955
MwoI GCNNNNNNNGC 2 cut(s) 323, 478
NciI CCSGG 1 cut(s) 71
NdeII GATC 2 cut(s) 837, 863
NheI GCTAGC 1 cut(s) 1061
NlaIII CATG 5 cut(s) 38, 459, 481, 808, 966
NlaIV GGNNCC 2 cut(s) 46, 615
NmuCI GTSAC 1 cut(s) 301
NsiI ATGCAT 2 cut(s) 159, 898
NspI RCATGY 2 cut(s) 38, 481
PaeI GCATGC 1 cut(s) 481
PaeR7I CTCGAG 1 cut(s) 22
PfeI GAWTC 3 cut(s) 347, 371, 636
PflMI CCANNNNNTGG 2 cut(s) 360, 386
PkrI GCNGC 1 cut(s) 593
PleI GAGTC 2 cut(s) 46, 172
PpsI GAGTC 2 cut(s) 46, 172
Ppu21I YACGTR 1 cut(s) 736
PshBI ATTAAT 1 cut(s) 759
Psp124BI GAGCTC 1 cut(s) 17
Psp6I CCWGG 4 cut(s) 295, 544, 582, 953
PspFI CCCAGC 1 cut(s) 131
PspGI CCWGG 4 cut(s) 295, 544, 582, 953
PspN4I GGNNCC 2 cut(s) 46, 615
PspPI GGNCC 1 cut(s) 614
PspXI VCTCGAGB 1 cut(s) 22
PstI CTGCAG 1 cut(s) 237
RsaI GTAC 4 cut(s) 243, 734, 738, 858
RsaNI GTAC 4 cut(s) 242, 733, 737, 857
RseI CAYNNNNRTG 1 cut(s) 1023
SacI GAGCTC 1 cut(s) 17
SaqAI TTAA 4 cut(s) 269, 759, 1023, 1108
SatI GCNGC 1 cut(s) 592
Sau3AI GATC 2 cut(s) 837, 863
Sau96I GGNCC 1 cut(s) 614
SchI GAGTC 2 cut(s) 46, 172
ScrFI CCNGG 5 cut(s) 71, 297, 546, 584, 955
SduI GDGCHC 1 cut(s) 17
SfaNI GCATC 4 cut(s) 144, 166, 883, 957
SfcI CTRYAG 2 cut(s) 233, 280
Sfr274I CTCGAG 1 cut(s) 22
SlaI CTCGAG 1 cut(s) 22
SmiMI CAYNNNNRTG 1 cut(s) 1023
SmlI CTYRAG 1 cut(s) 22
SmoI CTYRAG 1 cut(s) 22
SnaBI TACGTA 1 cut(s) 736
SphI GCATGC 1 cut(s) 481
Sse9I AATT 3 cut(s) 110, 748, 1084
SsiI CCGC 1 cut(s) 671
SspMI CTAG 4 cut(s) 41, 654, 785, 1062
SstI GAGCTC 1 cut(s) 17
StyD4I CCNGG 5 cut(s) 69, 295, 544, 582, 953
StyI CCWWGG 3 cut(s) 385, 768, 784
TaaI ACNGT 3 cut(s) 172, 250, 1072
TaiI ACGT 1 cut(s) 738
TaqI TCGA 4 cut(s) 17, 23, 165, 831
TasI AATT 3 cut(s) 110, 748, 1084
TatI WGTACW 1 cut(s) 856
TfiI GAWTC 3 cut(s) 347, 371, 636
Tru1I TTAA 4 cut(s) 269, 759, 1023, 1108
Tru9I TTAA 4 cut(s) 269, 759, 1023, 1108
TscAI CASTG 2 cut(s) 211, 310
TseFI GTSAC 1 cut(s) 301
TseI GCWGC 1 cut(s) 591
Tsp45I GTSAC 1 cut(s) 301
TspDTI ATGAA 5 cut(s) 397, 482, 554, 708, 1041
TspRI CASTG 2 cut(s) 211, 310
Van91I CCANNNNNTGG 2 cut(s) 360, 386
VspI ATTAAT 1 cut(s) 759
XagI CCTNNNNNAGG 1 cut(s) 1095
XapI RAATTY 3 cut(s) 110, 748, 1084
XceI RCATGY 2 cut(s) 38, 481
XhoI CTCGAG 1 cut(s) 22
XmaJI CCTAGG 1 cut(s) 784
XspI CTAG 4 cut(s) 41, 654, 785, 1062
Zsp2I ATGCAT 2 cut(s) 159, 898
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.