FvH4_5g14981

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0014291
Physical Location & Seq
Reverse (-)
8492362 .. 8494724
2363 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g14981.t1

Sequence Viewer

Length: 972 bp
ATGAATGATGGTAGTTTGTTGCAGACCAATAATTGGCAATGGAAATTTAAGGGTGATTCTATAAACATATACTATGAGGAGTATGAAAAGGAGAGAGATGGTCCTTGTAAGAATATACTTATGATACCAACGATTTCTGATGTTAGCACAGTTGAAGAATGGAGATCAGTAGCAAGTAATATTGTTCAGCAAGTTGGTAATGTTAATTGGCGAGCGACTATTGTTGATTGGCCTGGTCTAGGATACTCTGATAGGCCAAAGATGGACTACACTGCTGATGTCATGGAGAAATTTCTGGTCGACTTCATCAATTCACCAGATGGTCCTCTAAATGGCTCAGAAAATGATCTTGTAGTATTTGGAGGAGGACATGCTGCCACTCTAACTATCCGTGCAGCAAAGCAGGGTGCAGTCAAACCTAAAGCGATAGCTGCTATTGCACCCACCTGGGCTGGTCCCCTTCCTATTGTGTTTGGTCGAGATTCTAGCATGGAAACAAGGTATGGACTGCTTAGAGGCACCTTAAGAGCCCCTGCTTTAGGCTGGATGATGTATAACATGCTTGTCAGCAATGAGAAATCAATTGAATCTCAGTACAAATCCCATGTATATTCAAATCCTGACAATGTGACTCCTGGAATTATTGAAAGTAGATATGCCTTAACCAAAAGGAAAGGTGCTCGCTATGCACCTGCTGCTTTCTTGACCGGTCTTCTTGACGCTGTACAATCTAGAGAGGAATTTCTTGAACTCTTTGCAGATATGGGCAACAAAAAGATACCAGTTCTTGTTGTGTCCACTAAAGGTCCTCCAAAGAGGTCAAAAGCAGAAATGGAGGCTCTCAGGGAAGCCAAGGGAGTGAGTAAGTTTGTTGAGGTGCCAGGCGCTCTTCTTCCGCAAGAGGAGTATCCTGCTATAGTTGCTGAGGAGCTTTACCAGTTCTTGCAAGAAAACTTCGAATCCAAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_6

Protein Analysis

324

Amino Acids

35.95

Weight (kDa)

5.39

Isoelectric Point (pI)

41.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014291)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74640
fragaria_vesca FvH4_5g14981
malus_domestica MD14G1199800.v1.1
prunus_persica Prupe.5G193100_v2.0.a1
pyrus_communis pycom14g16570
rosa_chinensis RchiOBHm_Chr7g0181351
rosa_laevigata RLG00000005196
rosa_multiflora Rmu_co8287351.1_g000001 Rmu_co8345699.1_g000001 Rmu_sc0013944.1_g000001
rosa_roxburghii Rroxscaffold_3G00272110
rosa_rugosa Rorug06G0440400
rosa_samantha Rh7AG042400 Rh7BG041300 Rh7CG043700 Rh7DG042200
rosa_wichuraiana Rw7G003500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 700
Acc36I ACCTGC 1 cut(s) 700
AccB1I GGYRCC 2 cut(s) 518, 877
AccB7I CCANNNNNTGG 1 cut(s) 33
AccI GTMKAC 1 cut(s) 300
AciI CCGC 1 cut(s) 896
AcsI RAATTY 3 cut(s) 44, 290, 740
AfaI GTAC 2 cut(s) 596, 726
AfiI CCNNNNNNNGG 4 cut(s) 33, 239, 332, 539
AflII CTTAAG 1 cut(s) 523
AgeI ACCGGT 1 cut(s) 707
AgsI TTSAA 5 cut(s) 155, 587, 615, 647, 749
AjnI CCWGG 4 cut(s) 232, 446, 634, 880
AluBI AGCT 2 cut(s) 431, 931
AluI AGCT 2 cut(s) 431, 931
Alw21I GWGCWC 1 cut(s) 682
AoxI GGCC 2 cut(s) 230, 254
ApeKI GCWGC 4 cut(s) 374, 395, 431, 695
ApoI RAATTY 3 cut(s) 44, 290, 740
AsiGI ACCGGT 1 cut(s) 707
AspLEI GCGC 1 cut(s) 887
AspS9I GGNCC 4 cut(s) 101, 323, 455, 806
AsuHPI GGTGA 2 cut(s) 65, 306
AsuII TTCGAA 1 cut(s) 957
AvaII GGWCC 4 cut(s) 101, 323, 455, 806
BanI GGYRCC 2 cut(s) 518, 877
BanII GRGCYC 1 cut(s) 532
BbsI GAAGAC 1 cut(s) 704
Bbv12I GWGCWC 1 cut(s) 682
BbvCI CCTCAGC 1 cut(s) 924
BbvI GCAGC 4 cut(s) 361, 407, 418, 682
BccI CCATC 4 cut(s) 2, 92, 256, 314
BciT130I CCWGG 4 cut(s) 234, 448, 636, 882
BciVI GTATCC 2 cut(s) 236, 918
BfaI CTAG 3 cut(s) 239, 486, 732
BfmI CTRYAG 1 cut(s) 915
BfoI RGCGCY 1 cut(s) 888
BfrI CTTAAG 1 cut(s) 523
BfuAI ACCTGC 1 cut(s) 700
BfuI GTATCC 2 cut(s) 236, 918
BisI GCNGC 4 cut(s) 375, 396, 432, 696
BlsI GCNGC 4 cut(s) 376, 397, 433, 697
Bme1390I CCNGG 4 cut(s) 234, 448, 636, 882
Bme18I GGWCC 4 cut(s) 101, 323, 455, 806
BmgT120I GGNCC 4 cut(s) 101, 323, 455, 806
BmiI GGNNCC 3 cut(s) 457, 520, 879
BmrFI CCNGG 4 cut(s) 234, 448, 636, 882
BpiI GAAGAC 1 cut(s) 704
Bpu10I CCTNAGC 1 cut(s) 924
Bpu14I TTCGAA 1 cut(s) 957
BsaJI CCNNGG 2 cut(s) 447, 852
BsaWI WCCGGW 1 cut(s) 707
Bsc4I CCNNNNNNNGG 4 cut(s) 33, 239, 332, 539
Bse118I RCCGGY 1 cut(s) 707
Bse1I ACTGG 2 cut(s) 782, 937
Bse3DI GCAATG 2 cut(s) 44, 577
BseBI CCWGG 4 cut(s) 234, 448, 636, 882
BseDI CCNNGG 2 cut(s) 447, 852
BseGI GGATG 1 cut(s) 552
BseLI CCNNNNNNNGG 4 cut(s) 33, 239, 332, 539
BseMI GCAATG 2 cut(s) 44, 577
BseMII CTCAG 4 cut(s) 351, 605, 856, 915
BseNI ACTGG 2 cut(s) 782, 937
BseRI GAGGAG 4 cut(s) 92, 378, 917, 941
BseXI GCAGC 4 cut(s) 361, 407, 418, 682
BsgI GTGCAG 2 cut(s) 414, 429
BshFI GGCC 2 cut(s) 232, 256
BshNI GGYRCC 2 cut(s) 518, 877
BshTI ACCGGT 1 cut(s) 707
BsiHKAI GWGCWC 1 cut(s) 682
BsiSI CCGG 1 cut(s) 708
BslFI GGGAC 1 cut(s) 441
BslI CCNNNNNNNGG 4 cut(s) 33, 239, 332, 539
BsmFI GGGAC 1 cut(s) 441
BsnI GGCC 2 cut(s) 232, 256
Bsp119I TTCGAA 1 cut(s) 957
Bsp1286I GDGCHC 2 cut(s) 532, 682
Bsp1407I TGTACA 1 cut(s) 724
Bsp143I GATC 2 cut(s) 164, 346
BspACI CCGC 1 cut(s) 896
BspANI GGCC 2 cut(s) 232, 256
BspCNI CTCAG 4 cut(s) 350, 604, 855, 916
BspLI GGNNCC 3 cut(s) 457, 520, 879
BspMI ACCTGC 1 cut(s) 700
BspQI GCTCTTC 1 cut(s) 894
BspT104I TTCGAA 1 cut(s) 957
BspT107I GGYRCC 2 cut(s) 518, 877
BspTI CTTAAG 1 cut(s) 523
BsrDI GCAATG 2 cut(s) 44, 577
BsrFI RCCGGY 1 cut(s) 707
BsrGI TGTACA 1 cut(s) 724
BsrI ACTGG 2 cut(s) 782, 937
BssAI RCCGGY 1 cut(s) 707
BssECI CCNNGG 2 cut(s) 447, 852
BssMI GATC 2 cut(s) 164, 346
BssT1I CCWWGG 1 cut(s) 852
Bst2UI CCWGG 4 cut(s) 234, 448, 636, 882
Bst4CI ACNGT 1 cut(s) 151
Bst6I CTCTTC 1 cut(s) 894
BstAFI CTTAAG 1 cut(s) 523
BstAPI GCANNNNNTGC 1 cut(s) 695
BstAUI TGTACA 1 cut(s) 724
BstBI TTCGAA 1 cut(s) 957
BstC8I GCNNGC 2 cut(s) 213, 682
BstDEI CTNAG 5 cut(s) 337, 512, 591, 842, 924
BstENI CCTNNNNNAGG 2 cut(s) 237, 537
BstF5I GGATG 1 cut(s) 552
BstH2I RGCGCY 1 cut(s) 888
BstHHI GCGC 1 cut(s) 887
BstKTI GATC 2 cut(s) 167, 349
BstMBI GATC 2 cut(s) 164, 346
BstMWI GCNNNNNNNGC 5 cut(s) 431, 437, 686, 695, 920
BstNI CCWGG 4 cut(s) 234, 448, 636, 882
BstNSI RCATGY 2 cut(s) 374, 562
BstSCI CCNGG 4 cut(s) 232, 446, 634, 880
BstSFI CTRYAG 1 cut(s) 915
BstV1I GCAGC 4 cut(s) 361, 407, 418, 682
BstV2I GAAGAC 1 cut(s) 704
BsuI GTATCC 2 cut(s) 236, 918
BsuRI GGCC 2 cut(s) 232, 256
BtsCI GGATG 1 cut(s) 552
BtsI GCAGTG 1 cut(s) 270
BtsIMutI CAGTG 1 cut(s) 270
BveI ACCTGC 1 cut(s) 700
Cac8I GCNNGC 2 cut(s) 213, 682
CfoI GCGC 1 cut(s) 887
Cfr10I RCCGGY 1 cut(s) 707
Cfr13I GGNCC 4 cut(s) 101, 323, 455, 806
CseI GACGC 1 cut(s) 728
Csp6I GTAC 2 cut(s) 595, 725
CspAI ACCGGT 1 cut(s) 707
CviAII CATG 5 cut(s) 283, 371, 490, 559, 605
CviQI GTAC 2 cut(s) 595, 725
DdeI CTNAG 5 cut(s) 337, 512, 591, 842, 924
DpnI GATC 2 cut(s) 166, 348
DpnII GATC 2 cut(s) 164, 346
Eam1104I CTCTTC 1 cut(s) 894
EarI CTCTTC 1 cut(s) 894
Eco130I CCWWGG 1 cut(s) 852
Eco24I GRGCYC 1 cut(s) 532
Eco47I GGWCC 4 cut(s) 101, 323, 455, 806
EcoNI CCTNNNNNAGG 2 cut(s) 237, 537
EcoO109I RGGNCCY 1 cut(s) 806
EcoRII CCWGG 4 cut(s) 232, 446, 634, 880
EcoT14I CCWWGG 1 cut(s) 852
EcoT38I GRGCYC 1 cut(s) 532
ErhI CCWWGG 1 cut(s) 852
FaeI CATG 5 cut(s) 286, 374, 493, 562, 608
FaqI GGGAC 1 cut(s) 441
FatI CATG 5 cut(s) 282, 370, 489, 558, 604
FblI GTMKAC 1 cut(s) 300
Fnu4HI GCNGC 4 cut(s) 375, 396, 432, 696
FokI GGATG 1 cut(s) 559
FriOI GRGCYC 1 cut(s) 532
Fsp4HI GCNGC 4 cut(s) 375, 396, 432, 696
FspBI CTAG 3 cut(s) 239, 486, 732
GlaI GCGC 1 cut(s) 886
GluI GCNGC 4 cut(s) 375, 396, 432, 696
HaeII RGCGCY 1 cut(s) 888
HaeIII GGCC 2 cut(s) 232, 256
HapII CCGG 1 cut(s) 708
HgaI GACGC 1 cut(s) 728
HhaI GCGC 1 cut(s) 887
Hin1II CATG 5 cut(s) 286, 374, 493, 562, 608
Hin6I GCGC 1 cut(s) 885
HinP1I GCGC 1 cut(s) 885
HincII GTYRAC 1 cut(s) 301
HindII GTYRAC 1 cut(s) 301
HinfI GANTC 5 cut(s) 56, 482, 587, 631, 959
HpaII CCGG 1 cut(s) 708
HphI GGTGA 2 cut(s) 65, 306
Hpy166II GTNNAC 2 cut(s) 301, 798
Hpy188I TCNGA 3 cut(s) 139, 250, 340
Hpy188III TCNNGA 6 cut(s) 479, 620, 703, 716, 732, 746
Hpy8I GTNNAC 2 cut(s) 301, 798
HpyAV CCTTC 1 cut(s) 470
HpyCH4III ACNGT 1 cut(s) 151
HpyCH4V TGCA 7 cut(s) 22, 395, 410, 440, 689, 758, 946
HpyF10VI GCNNNNNNNGC 5 cut(s) 431, 437, 686, 695, 920
HpyF3I CTNAG 5 cut(s) 337, 512, 591, 842, 924
Hsp92II CATG 5 cut(s) 286, 374, 493, 562, 608
HspAI GCGC 1 cut(s) 885
Kzo9I GATC 2 cut(s) 164, 346
LguI GCTCTTC 1 cut(s) 894
LmnI GCTCC 1 cut(s) 928
Lsp1109I GCAGC 4 cut(s) 361, 407, 418, 682
MaeI CTAG 3 cut(s) 239, 486, 732
MaeIII GTNAC 1 cut(s) 628
MalI GATC 2 cut(s) 166, 348
MboI GATC 2 cut(s) 164, 346
MboII GAAGA 4 cut(s) 167, 704, 881, 884
MfeI CAATTG 1 cut(s) 582
MhlI GDGCHC 2 cut(s) 532, 682
MluCI AATT 8 cut(s) 31, 44, 205, 290, 310, 582, 639, 740
MlyI GAGTC 1 cut(s) 625
MseI TTAA 4 cut(s) 48, 204, 524, 662
MspCI CTTAAG 1 cut(s) 523
MspI CCGG 1 cut(s) 708
MspR9I CCNGG 4 cut(s) 234, 448, 636, 882
MunI CAATTG 1 cut(s) 582
MvaI CCWGG 4 cut(s) 234, 448, 636, 882
MwoI GCNNNNNNNGC 5 cut(s) 431, 437, 686, 695, 920
NdeII GATC 2 cut(s) 164, 346
NlaIII CATG 5 cut(s) 286, 374, 493, 562, 608
NlaIV GGNNCC 3 cut(s) 457, 520, 879
NmuCI GTSAC 1 cut(s) 628
NspI RCATGY 2 cut(s) 374, 562
NspV TTCGAA 1 cut(s) 957
PaqCI CACCTGC 1 cut(s) 700
PciSI GCTCTTC 1 cut(s) 894
PfeI GAWTC 4 cut(s) 56, 482, 587, 959
PflMI CCANNNNNTGG 1 cut(s) 33
PfoI TCCNGGA 1 cut(s) 634
PinAI ACCGGT 1 cut(s) 707
PkrI GCNGC 4 cut(s) 376, 397, 433, 697
PleI GAGTC 1 cut(s) 625
PpsI GAGTC 1 cut(s) 625
PpuMI RGGWCCY 1 cut(s) 806
Psp5II RGGWCCY 1 cut(s) 806
Psp6I CCWGG 4 cut(s) 232, 446, 634, 880
PspGI CCWGG 4 cut(s) 232, 446, 634, 880
PspN4I GGNNCC 3 cut(s) 457, 520, 879
PspPI GGNCC 4 cut(s) 101, 323, 455, 806
PspPPI RGGWCCY 1 cut(s) 806
RsaI GTAC 2 cut(s) 596, 726
RsaNI GTAC 2 cut(s) 595, 725
SalI GTCGAC 1 cut(s) 299
SapI GCTCTTC 1 cut(s) 894
SaqAI TTAA 4 cut(s) 48, 204, 524, 662
SatI GCNGC 4 cut(s) 375, 396, 432, 696
Sau3AI GATC 2 cut(s) 164, 346
Sau96I GGNCC 4 cut(s) 101, 323, 455, 806
SchI GAGTC 1 cut(s) 625
ScrFI CCNGG 4 cut(s) 234, 448, 636, 882
SduI GDGCHC 2 cut(s) 532, 682
SfcI CTRYAG 1 cut(s) 915
SfuI TTCGAA 1 cut(s) 957
SinI GGWCC 4 cut(s) 101, 323, 455, 806
SmlI CTYRAG 1 cut(s) 523
SmoI CTYRAG 1 cut(s) 523
Sse9I AATT 8 cut(s) 31, 44, 205, 290, 310, 582, 639, 740
SsiI CCGC 1 cut(s) 896
SspI AATATT 1 cut(s) 181
SspMI CTAG 3 cut(s) 239, 486, 732
StyD4I CCNGG 4 cut(s) 232, 446, 634, 880
StyI CCWWGG 1 cut(s) 852
TaaI ACNGT 1 cut(s) 151
TaqI TCGA 3 cut(s) 300, 478, 957
TasI AATT 8 cut(s) 31, 44, 205, 290, 310, 582, 639, 740
TatI WGTACW 2 cut(s) 594, 724
TfiI GAWTC 4 cut(s) 56, 482, 587, 959
Tru1I TTAA 4 cut(s) 48, 204, 524, 662
Tru9I TTAA 4 cut(s) 48, 204, 524, 662
TscAI CASTG 1 cut(s) 277
TseFI GTSAC 1 cut(s) 628
TseI GCWGC 4 cut(s) 374, 395, 431, 695
Tsp45I GTSAC 1 cut(s) 628
TspDTI ATGAA 3 cut(s) 17, 99, 295
TspGWI ACGGA 1 cut(s) 380
TspRI CASTG 1 cut(s) 277
Van91I CCANNNNNTGG 1 cut(s) 33
Vha464I CTTAAG 1 cut(s) 523
VpaK11BI GGWCC 4 cut(s) 101, 323, 455, 806
XagI CCTNNNNNAGG 2 cut(s) 237, 537
XapI RAATTY 3 cut(s) 44, 290, 740
XbaI TCTAGA 1 cut(s) 731
XceI RCATGY 2 cut(s) 374, 562
XmiI GTMKAC 1 cut(s) 300
XspI CTAG 3 cut(s) 239, 486, 732
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.