Rmu_sc0013944.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013944.1
OG0014291
Physical Location & Seq
Forward (+)
1 .. 1511
1511 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013944.1_g000001.1.cds

Sequence Viewer

Length: 632 bp
aaaatgatcttgtggtatttggaggaggacatgctgccactttaactatccgtgctgcaaagcggggtgcagtaaaaccgaaagctatagctgctattgcacccacctgggcaggtccccttcctattgtgtttggtcgagattctagcatggaaacaaggtatggactgcttagaggcaccttaagagcccctgctttaggctggatgatgtataacatgcttgtcagcaatgagaaatcaattgaatctcaatacaaatcccacgtctattcaaatcctgacaatgtgactcctggaattattgaaagtagatatgccctaaccaaaaggaaaggtgctcgctacgctcctgctgctttcttgaccggtcttcttgatgctgtacaatcccgagaggaatttcttgaactctttgctgatatggcaaacaaaaagataccggtagttgtggtgtccactaaaggatctccaaagaggtcaaaagcagagatggaggctctcagggaagccaagggagttagtaagtttgttgaggtaccaggcgctcttcttccgcaagaggagtatccagctatggttgctgaggagctttaccagttcttgcgagaaaactttgaatccaaagattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_6

Protein Analysis

209

Amino Acids

22.95

Weight (kDa)

9.32

Isoelectric Point (pI)

48.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014291)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74640
fragaria_vesca FvH4_5g14981
malus_domestica MD14G1199800.v1.1
prunus_persica Prupe.5G193100_v2.0.a1
pyrus_communis pycom14g16570
rosa_chinensis RchiOBHm_Chr7g0181351
rosa_laevigata RLG00000005196
rosa_multiflora Rmu_co8287351.1_g000001 Rmu_co8345699.1_g000001 Rmu_sc0013944.1_g000001
rosa_roxburghii Rroxscaffold_3G00272110
rosa_rugosa Rorug06G0440400
rosa_samantha Rh7AG042400 Rh7BG041300 Rh7CG043700 Rh7DG042200
rosa_wichuraiana Rw7G003500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 103
Acc65I GGTACC 1 cut(s) 537
AccB1I GGYRCC 2 cut(s) 178, 537
AciI CCGC 2 cut(s) 63, 556
AclWI GGATC 1 cut(s) 474
AcsI RAATTY 1 cut(s) 400
AfaI GTAC 2 cut(s) 386, 539
AfiI CCNNNNNNNGG 1 cut(s) 199
AflII CTTAAG 1 cut(s) 183
AgeI ACCGGT 2 cut(s) 367, 441
AgsI TTSAA 5 cut(s) 247, 275, 307, 409, 619
AjiI CACGTC 1 cut(s) 267
AjnI CCWGG 3 cut(s) 106, 294, 540
AluBI AGCT 4 cut(s) 85, 91, 574, 591
AluI AGCT 4 cut(s) 85, 91, 574, 591
Alw21I GWGCWC 1 cut(s) 342
AlwI GGATC 1 cut(s) 474
Ama87I CYCGRG 1 cut(s) 392
ApeKI GCWGC 4 cut(s) 34, 55, 91, 355
ApoI RAATTY 1 cut(s) 400
ArsI GACNNNNNNTTYG 2 cut(s) 251, 283
AsiGI ACCGGT 2 cut(s) 367, 441
Asp718I GGTACC 1 cut(s) 537
AspLEI GCGC 1 cut(s) 547
AspS9I GGNCC 1 cut(s) 115
AvaI CYCGRG 1 cut(s) 392
AvaII GGWCC 1 cut(s) 115
BanI GGYRCC 2 cut(s) 178, 537
BanII GRGCYC 1 cut(s) 192
BbsI GAAGAC 1 cut(s) 364
Bbv12I GWGCWC 1 cut(s) 342
BbvCI CCTCAGC 1 cut(s) 584
BbvI GCAGC 4 cut(s) 21, 42, 78, 342
BccI CCATC 1 cut(s) 486
BciT130I CCWGG 3 cut(s) 108, 296, 542
BciVI GTATCC 1 cut(s) 578
BfaI CTAG 1 cut(s) 146
BfmI CTRYAG 1 cut(s) 86
BfoI RGCGCY 1 cut(s) 548
BfrI CTTAAG 1 cut(s) 183
BfuAI ACCTGC 1 cut(s) 103
BfuI GTATCC 1 cut(s) 578
BisI GCNGC 4 cut(s) 35, 56, 92, 356
BlsI GCNGC 4 cut(s) 36, 57, 93, 357
Bme1390I CCNGG 3 cut(s) 108, 296, 542
Bme18I GGWCC 1 cut(s) 115
BmeT110I CYCGRG 1 cut(s) 392
BmgBI CACGTC 1 cut(s) 267
BmgT120I GGNCC 1 cut(s) 115
BmiI GGNNCC 3 cut(s) 117, 180, 539
BmrFI CCNGG 3 cut(s) 108, 296, 542
BmsI GCATC 1 cut(s) 369
BpiI GAAGAC 1 cut(s) 364
Bpu10I CCTNAGC 1 cut(s) 584
BsaJI CCNNGG 2 cut(s) 107, 512
BsaWI WCCGGW 2 cut(s) 367, 441
Bsc4I CCNNNNNNNGG 1 cut(s) 199
Bse118I RCCGGY 2 cut(s) 367, 441
Bse1I ACTGG 1 cut(s) 597
Bse3DI GCAATG 1 cut(s) 237
BseBI CCWGG 3 cut(s) 108, 296, 542
BseDI CCNNGG 2 cut(s) 107, 512
BseGI GGATG 1 cut(s) 212
BseLI CCNNNNNNNGG 1 cut(s) 199
BseMI GCAATG 1 cut(s) 237
BseMII CTCAG 2 cut(s) 516, 575
BseNI ACTGG 1 cut(s) 597
BseRI GAGGAG 3 cut(s) 38, 577, 601
BseXI GCAGC 4 cut(s) 21, 42, 78, 342
BsgI GTGCAG 1 cut(s) 89
BshNI GGYRCC 2 cut(s) 178, 537
BshTI ACCGGT 2 cut(s) 367, 441
BsiHKAI GWGCWC 1 cut(s) 342
BsiHKCI CYCGRG 1 cut(s) 392
BsiSI CCGG 2 cut(s) 368, 442
BslFI GGGAC 1 cut(s) 101
BslI CCNNNNNNNGG 1 cut(s) 199
BsmFI GGGAC 1 cut(s) 101
BsoBI CYCGRG 1 cut(s) 392
Bsp1286I GDGCHC 2 cut(s) 192, 342
Bsp1407I TGTACA 1 cut(s) 384
Bsp143I GATC 2 cut(s) 6, 466
BspACI CCGC 2 cut(s) 63, 556
BspCNI CTCAG 2 cut(s) 515, 576
BspLI GGNNCC 3 cut(s) 117, 180, 539
BspMI ACCTGC 1 cut(s) 103
BspPI GGATC 1 cut(s) 474
BspQI GCTCTTC 1 cut(s) 554
BspT107I GGYRCC 2 cut(s) 178, 537
BspTI CTTAAG 1 cut(s) 183
BsrDI GCAATG 1 cut(s) 237
BsrFI RCCGGY 2 cut(s) 367, 441
BsrGI TGTACA 1 cut(s) 384
BsrI ACTGG 1 cut(s) 597
BssAI RCCGGY 2 cut(s) 367, 441
BssECI CCNNGG 2 cut(s) 107, 512
BssMI GATC 2 cut(s) 6, 466
BssT1I CCWWGG 1 cut(s) 512
Bst2UI CCWGG 3 cut(s) 108, 296, 542
Bst6I CTCTTC 1 cut(s) 554
BstAFI CTTAAG 1 cut(s) 183
BstAUI TGTACA 1 cut(s) 384
BstC8I GCNNGC 1 cut(s) 342
BstDEI CTNAG 3 cut(s) 172, 502, 584
BstENI CCTNNNNNAGG 1 cut(s) 197
BstF5I GGATG 1 cut(s) 212
BstH2I RGCGCY 1 cut(s) 548
BstHHI GCGC 1 cut(s) 547
BstKTI GATC 2 cut(s) 9, 469
BstMBI GATC 2 cut(s) 6, 466
BstMWI GCNNNNNNNGC 6 cut(s) 91, 97, 346, 355, 424, 580
BstNI CCWGG 3 cut(s) 108, 296, 542
BstNSI RCATGY 2 cut(s) 34, 222
BstSCI CCNGG 3 cut(s) 106, 294, 540
BstSFI CTRYAG 1 cut(s) 86
BstV1I GCAGC 4 cut(s) 21, 42, 78, 342
BstV2I GAAGAC 1 cut(s) 364
BstX2I RGATCY 1 cut(s) 466
BstYI RGATCY 1 cut(s) 466
BsuI GTATCC 1 cut(s) 578
BtrI CACGTC 1 cut(s) 267
BtsCI GGATG 1 cut(s) 212
BveI ACCTGC 1 cut(s) 103
Cac8I GCNNGC 1 cut(s) 342
CfoI GCGC 1 cut(s) 547
Cfr10I RCCGGY 2 cut(s) 367, 441
Cfr13I GGNCC 1 cut(s) 115
Csp6I GTAC 2 cut(s) 385, 538
CspAI ACCGGT 2 cut(s) 367, 441
CviAII CATG 3 cut(s) 31, 150, 219
CviJI RGCY 8 cut(s) 85, 91, 190, 203, 499, 511, 574, 591
CviKI_1 RGCY 8 cut(s) 85, 91, 190, 203, 499, 511, 574, 591
CviQI GTAC 2 cut(s) 385, 538
DdeI CTNAG 3 cut(s) 172, 502, 584
DpnI GATC 2 cut(s) 8, 468
DpnII GATC 2 cut(s) 6, 466
Eam1104I CTCTTC 1 cut(s) 554
EarI CTCTTC 1 cut(s) 554
Eco130I CCWWGG 1 cut(s) 512
Eco24I GRGCYC 1 cut(s) 192
Eco47I GGWCC 1 cut(s) 115
Eco88I CYCGRG 1 cut(s) 392
EcoNI CCTNNNNNAGG 1 cut(s) 197
EcoO109I RGGNCCY 1 cut(s) 115
EcoRII CCWGG 3 cut(s) 106, 294, 540
EcoT14I CCWWGG 1 cut(s) 512
EcoT38I GRGCYC 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 512
FaeI CATG 3 cut(s) 34, 153, 222
FaiI YATR 9 cut(s) 32, 88, 151, 164, 215, 220, 317, 424, 577
FaqI GGGAC 1 cut(s) 101
FatI CATG 3 cut(s) 30, 149, 218
FauI CCCGC 1 cut(s) 56
Fnu4HI GCNGC 4 cut(s) 35, 56, 92, 356
FokI GGATG 1 cut(s) 219
FriOI GRGCYC 1 cut(s) 192
Fsp4HI GCNGC 4 cut(s) 35, 56, 92, 356
FspBI CTAG 1 cut(s) 146
GlaI GCGC 1 cut(s) 546
GluI GCNGC 4 cut(s) 35, 56, 92, 356
HaeII RGCGCY 1 cut(s) 548
HapII CCGG 2 cut(s) 368, 442
HhaI GCGC 1 cut(s) 547
Hin1II CATG 3 cut(s) 34, 153, 222
Hin6I GCGC 1 cut(s) 545
HinP1I GCGC 1 cut(s) 545
HinfI GANTC 4 cut(s) 142, 247, 291, 619
HpaII CCGG 2 cut(s) 368, 442
Hpy166II GTNNAC 1 cut(s) 458
Hpy188III TCNNGA 6 cut(s) 139, 280, 363, 376, 392, 406
Hpy8I GTNNAC 1 cut(s) 458
HpyAV CCTTC 1 cut(s) 130
HpyCH4IV ACGT 1 cut(s) 266
HpyCH4V TGCA 3 cut(s) 58, 70, 100
HpyF10VI GCNNNNNNNGC 6 cut(s) 91, 97, 346, 355, 424, 580
HpyF3I CTNAG 3 cut(s) 172, 502, 584
HpySE526I ACGT 1 cut(s) 266
Hsp92II CATG 3 cut(s) 34, 153, 222
HspAI GCGC 1 cut(s) 545
KpnI GGTACC 1 cut(s) 541
Kzo9I GATC 2 cut(s) 6, 466
LguI GCTCTTC 1 cut(s) 554
LmnI GCTCC 2 cut(s) 354, 588
Lsp1109I GCAGC 4 cut(s) 21, 42, 78, 342
LweI GCATC 1 cut(s) 369
MaeI CTAG 1 cut(s) 146
MaeII ACGT 1 cut(s) 266
MaeIII GTNAC 1 cut(s) 288
MalI GATC 2 cut(s) 8, 468
MboI GATC 2 cut(s) 6, 466
MboII GAAGA 3 cut(s) 364, 541, 544
MfeI CAATTG 1 cut(s) 242
MflI RGATCY 1 cut(s) 466
MhlI GDGCHC 2 cut(s) 192, 342
MluCI AATT 3 cut(s) 242, 299, 400
MlyI GAGTC 1 cut(s) 285
MnlI CCTC 9 cut(s) 16, 19, 169, 390, 470, 489, 528, 555, 579
MseI TTAA 2 cut(s) 43, 184
MspCI CTTAAG 1 cut(s) 183
MspI CCGG 2 cut(s) 368, 442
MspR9I CCNGG 3 cut(s) 108, 296, 542
MunI CAATTG 1 cut(s) 242
MvaI CCWGG 3 cut(s) 108, 296, 542
MwoI GCNNNNNNNGC 6 cut(s) 91, 97, 346, 355, 424, 580
NdeII GATC 2 cut(s) 6, 466
NlaIII CATG 3 cut(s) 34, 153, 222
NlaIV GGNNCC 3 cut(s) 117, 180, 539
NmuCI GTSAC 1 cut(s) 288
NspI RCATGY 2 cut(s) 34, 222
PciSI GCTCTTC 1 cut(s) 554
PfeI GAWTC 3 cut(s) 142, 247, 619
PfoI TCCNGGA 1 cut(s) 294
PinAI ACCGGT 2 cut(s) 367, 441
PkrI GCNGC 4 cut(s) 36, 57, 93, 357
PleI GAGTC 1 cut(s) 285
PpsI GAGTC 1 cut(s) 285
PpuMI RGGWCCY 1 cut(s) 115
Psp5II RGGWCCY 1 cut(s) 115
Psp6I CCWGG 3 cut(s) 106, 294, 540
PspGI CCWGG 3 cut(s) 106, 294, 540
PspN4I GGNNCC 3 cut(s) 117, 180, 539
PspPI GGNCC 1 cut(s) 115
PspPPI RGGWCCY 1 cut(s) 115
PsuI RGATCY 1 cut(s) 466
RsaI GTAC 2 cut(s) 386, 539
RsaNI GTAC 2 cut(s) 385, 538
SapI GCTCTTC 1 cut(s) 554
SaqAI TTAA 2 cut(s) 43, 184
SatI GCNGC 4 cut(s) 35, 56, 92, 356
Sau3AI GATC 2 cut(s) 6, 466
Sau96I GGNCC 1 cut(s) 115
SchI GAGTC 1 cut(s) 285
ScrFI CCNGG 3 cut(s) 108, 296, 542
SduI GDGCHC 2 cut(s) 192, 342
SfaNI GCATC 1 cut(s) 369
SfcI CTRYAG 1 cut(s) 86
SinI GGWCC 1 cut(s) 115
SmlI CTYRAG 1 cut(s) 183
SmoI CTYRAG 1 cut(s) 183
Sse9I AATT 3 cut(s) 242, 299, 400
SsiI CCGC 2 cut(s) 63, 556
SspMI CTAG 1 cut(s) 146
StyD4I CCNGG 3 cut(s) 106, 294, 540
StyI CCWWGG 1 cut(s) 512
TaiI ACGT 1 cut(s) 269
TaqI TCGA 1 cut(s) 138
TasI AATT 3 cut(s) 242, 299, 400
TatI WGTACW 1 cut(s) 384
TfiI GAWTC 3 cut(s) 142, 247, 619
Tru1I TTAA 2 cut(s) 43, 184
Tru9I TTAA 2 cut(s) 43, 184
TseFI GTSAC 1 cut(s) 288
TseI GCWGC 4 cut(s) 34, 55, 91, 355
Tsp45I GTSAC 1 cut(s) 288
TspGWI ACGGA 1 cut(s) 40
Vha464I CTTAAG 1 cut(s) 183
VpaK11BI GGWCC 1 cut(s) 115
XagI CCTNNNNNAGG 1 cut(s) 197
XapI RAATTY 1 cut(s) 400
XceI RCATGY 2 cut(s) 34, 222
XspI CTAG 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.