Prupe.5G193100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0014291
Physical Location & Seq
Forward (+)
15753762 .. 15756219
2458 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G193100.1

Sequence Viewer

Length: 1152 bp
ATGGCGCTCTCTGCAGCATTCTACACATCTTCACAACCATCCCGTGCTCTTTTGTGCAGAACTCGTAGACCCAATTTCTCTCAGACTGCATGCTTCCAGAAAACCCTAACAATTAGGGCTTCAACCACCCTGGACTACTCCAAGCTCACTGTGGGTGAAAAATCTTCAGCCCCATCAAAGAGCAATAGTTGGCAATGGAAATTCAAGGAAAATTCTATTAACATCTACTATGAGGAGCATGAAAAGGAGAAAGAGGGTCCTTCTAAGAACGTCCTTATGATACCAACCATTTCTGATGTAAGCACTGTTGAAGAATGGAGATCAGTAGCAAGTAATCTTGTTCAGCAAGATGGTAATGTTAATTGGCGAGCAACCATTGTTGATTGGCCTGGTCTGGGGTACTCTGATAGGCCAAAGATGGACTACACTGCTGATCTCATGGAGAAATTTCTGGTTGACTTCATCAATGCACCTGATGGTCCTATAAGCGGCTCAGAAAATGATTTTGTAGTATTTGGAGGAGGGCATGCCGCCACTTTAACTATTCGTGCTGTAAAACGTGGTGCGGTGAAACCTAAAGCCATTGCTGCTATTGCACCCACCTGGGCTGGTCCCCTTCCTATTGTGTTTGGTCGAGATTCTAGCATGGAAACAAGGTATGGACTGCTTAGGGGAACCTTACGAGCCCCTGCTGTGGGCTGGATGATGTATAACATGCTTGTCAGCAATGAGAAGTCAATTGAATCGCAGTACAAATCACATGTCTATTCAAATCCGGACAATGTGACTCCTGGAATTATCGAAAGCCGATACGCACTGACCAAGCAGAAAGGAGCTCGCTATGTACCTGCTGCTTTCTTGACTGGTCTCCTTGACCCTGTACAAACACGAGAGGAATTTGTTGGACTCTTTGCAGAGATGGGCAGCCAGAAGATCCCAGTTCTTGTCCTGTCGACTGAAGGATCTCCAAAGAGGTCAAAAGCAGAGATGGAAGCTCTGAGGGAAGCTGAGGGAGTAAGTAAGTTTGTTGAGGTTCCAGGTGCTCTACTTCCTCAAGAGGAGTATCCTGCTATGGTTGCAGAGGAGCTTTACAAGTTCTTACAAGCTATGGTTGCAGAGGAGCTTTACAAGTTCTTACAAGAGAACTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_6

Protein Analysis

384

Amino Acids

42.61

Weight (kDa)

6.41

Isoelectric Point (pI)

43.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014291)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74640
fragaria_vesca FvH4_5g14981
malus_domestica MD14G1199800.v1.1
prunus_persica Prupe.5G193100_v2.0.a1
pyrus_communis pycom14g16570
rosa_chinensis RchiOBHm_Chr7g0181351
rosa_laevigata RLG00000005196
rosa_multiflora Rmu_co8287351.1_g000001 Rmu_co8345699.1_g000001 Rmu_sc0013944.1_g000001
rosa_roxburghii Rroxscaffold_3G00272110
rosa_rugosa Rorug06G0440400
rosa_samantha Rh7AG042400 Rh7BG041300 Rh7CG043700 Rh7DG042200
rosa_wichuraiana Rw7G003500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 856
AccI GTMKAC 2 cut(s) 67, 953
AccIII TCCGGA 1 cut(s) 775
AciI CCGC 3 cut(s) 489, 531, 566
AclWI GGATC 2 cut(s) 928, 970
AcsI RAATTY 4 cut(s) 200, 211, 446, 896
AcuI CTGAAG 2 cut(s) 150, 978
AfaI GTAC 4 cut(s) 401, 752, 846, 882
AfiI CCNNNNNNNGG 4 cut(s) 395, 488, 694, 695
AflIII ACRYGT 1 cut(s) 760
AgsI TTSAA 5 cut(s) 123, 205, 311, 743, 771
AjnI CCWGG 5 cut(s) 129, 388, 602, 790, 1036
AluBI AGCT 7 cut(s) 145, 836, 995, 1007, 1087, 1106, 1123
AluI AGCT 7 cut(s) 145, 836, 995, 1007, 1087, 1106, 1123
Alw21I GWGCWC 3 cut(s) 49, 838, 1045
Alw26I GTCTC 1 cut(s) 872
AlwI GGATC 2 cut(s) 928, 970
Aor13HI TCCGGA 1 cut(s) 775
AoxI GGCC 2 cut(s) 386, 410
ApeKI GCWGC 4 cut(s) 14, 587, 851, 924
ApoI RAATTY 4 cut(s) 200, 211, 446, 896
ArsI GACNNNNNNTTYG 2 cut(s) 747, 779
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 3 cut(s) 257, 479, 611
AsuHPI GGTGA 2 cut(s) 167, 580
AvaII GGWCC 3 cut(s) 257, 479, 611
BanII GRGCYC 2 cut(s) 688, 838
BauI CACGAG 1 cut(s) 888
Bbv12I GWGCWC 3 cut(s) 49, 838, 1045
BbvCI CCTCAGC 1 cut(s) 1008
BbvI GCAGC 4 cut(s) 26, 574, 838, 936
BccI CCATC 7 cut(s) 46, 181, 344, 412, 470, 913, 982
BciT130I CCWGG 5 cut(s) 131, 390, 604, 792, 1038
BciVI GTATCC 1 cut(s) 1074
BcoDI GTCTC 1 cut(s) 872
BfaI CTAG 1 cut(s) 642
BfmI CTRYAG 1 cut(s) 12
BfoI RGCGCY 1 cut(s) 8
BfuAI ACCTGC 1 cut(s) 856
BfuI GTATCC 1 cut(s) 1074
BisI GCNGC 6 cut(s) 15, 490, 531, 588, 852, 925
BlsI GCNGC 6 cut(s) 16, 491, 532, 589, 853, 926
Bme1390I CCNGG 5 cut(s) 131, 390, 604, 792, 1038
Bme18I GGWCC 3 cut(s) 257, 479, 611
BmgT120I GGNCC 3 cut(s) 257, 479, 611
BmiI GGNNCC 4 cut(s) 258, 613, 676, 1035
BmrFI CCNGG 5 cut(s) 131, 390, 604, 792, 1038
BmrI ACTGGG 1 cut(s) 932
BmuI ACTGGG 1 cut(s) 932
Bpu10I CCTNAGC 2 cut(s) 668, 1008
BpuEI CTTGAG 1 cut(s) 1038
BsaI GGTCTC 1 cut(s) 872
BsaJI CCNNGG 2 cut(s) 129, 603
BsaWI WCCGGW 1 cut(s) 775
Bsc4I CCNNNNNNNGG 4 cut(s) 395, 488, 694, 695
Bse1I ACTGG 2 cut(s) 868, 938
Bse3DI GCAATG 3 cut(s) 200, 582, 733
BseAI TCCGGA 1 cut(s) 775
BseBI CCWGG 5 cut(s) 131, 390, 604, 792, 1038
BseDI CCNNGG 2 cut(s) 129, 603
BseGI GGATG 2 cut(s) 38, 708
BseLI CCNNNNNNNGG 4 cut(s) 395, 488, 694, 695
BseMI GCAATG 3 cut(s) 200, 582, 733
BseMII CTCAG 4 cut(s) 95, 507, 989, 999
BseNI ACTGG 2 cut(s) 868, 938
BseRI GAGGAG 5 cut(s) 248, 534, 1073, 1097, 1133
BseXI GCAGC 4 cut(s) 26, 574, 838, 936
BsgI GTGCAG 1 cut(s) 76
BshFI GGCC 2 cut(s) 388, 412
BsiHKAI GWGCWC 3 cut(s) 49, 838, 1045
BsiSI CCGG 1 cut(s) 776
BslFI GGGAC 1 cut(s) 597
BslI CCNNNNNNNGG 4 cut(s) 395, 488, 694, 695
BsmAI GTCTC 1 cut(s) 872
BsmFI GGGAC 1 cut(s) 597
BsmI GAATGC 1 cut(s) 17
BsnI GGCC 2 cut(s) 388, 412
Bso31I GGTCTC 1 cut(s) 872
Bsp1286I GDGCHC 4 cut(s) 49, 688, 838, 1045
Bsp13I TCCGGA 1 cut(s) 775
Bsp1407I TGTACA 1 cut(s) 880
Bsp143I GATC 4 cut(s) 320, 433, 933, 962
BspACI CCGC 3 cut(s) 489, 531, 566
BspANI GGCC 2 cut(s) 388, 412
BspCNI CTCAG 4 cut(s) 94, 506, 990, 1000
BspEI TCCGGA 1 cut(s) 775
BspLI GGNNCC 4 cut(s) 258, 613, 676, 1035
BspMAI CTGCAG 1 cut(s) 16
BspMI ACCTGC 1 cut(s) 856
BspPI GGATC 2 cut(s) 928, 970
BspTNI GGTCTC 1 cut(s) 872
BsrDI GCAATG 3 cut(s) 200, 582, 733
BsrGI TGTACA 1 cut(s) 880
BsrI ACTGG 2 cut(s) 868, 938
BssECI CCNNGG 2 cut(s) 129, 603
BssMI GATC 4 cut(s) 320, 433, 933, 962
BssSI CACGAG 1 cut(s) 888
Bst2BI CACGAG 1 cut(s) 888
Bst2UI CCWGG 5 cut(s) 131, 390, 604, 792, 1038
Bst4CI ACNGT 2 cut(s) 151, 307
BstAUI TGTACA 1 cut(s) 880
BstC8I GCNNGC 4 cut(s) 91, 369, 528, 838
BstDEI CTNAG 6 cut(s) 81, 264, 493, 668, 998, 1008
BstF5I GGATG 2 cut(s) 38, 708
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 4 cut(s) 323, 436, 936, 965
BstMAI GTCTC 1 cut(s) 872
BstMBI GATC 4 cut(s) 320, 433, 933, 962
BstMWI GCNNNNNNNGC 5 cut(s) 11, 587, 593, 1076, 1112
BstNI CCWGG 5 cut(s) 131, 390, 604, 792, 1038
BstNSI RCATGY 4 cut(s) 93, 530, 718, 764
BstSCI CCNGG 5 cut(s) 129, 388, 602, 790, 1036
BstSFI CTRYAG 1 cut(s) 12
BstV1I GCAGC 4 cut(s) 26, 574, 838, 936
BstX2I RGATCY 2 cut(s) 933, 962
BstYI RGATCY 2 cut(s) 933, 962
BsuI GTATCC 1 cut(s) 1074
BsuRI GGCC 2 cut(s) 388, 412
BtsCI GGATG 2 cut(s) 38, 708
BtsI GCAGTG 1 cut(s) 426
BtsIMutI CAGTG 4 cut(s) 147, 303, 426, 815
BveI ACCTGC 1 cut(s) 856
Cac8I GCNNGC 4 cut(s) 91, 369, 528, 838
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 3 cut(s) 257, 479, 611
Csp6I GTAC 4 cut(s) 400, 751, 845, 881
CviAII CATG 7 cut(s) 90, 239, 439, 527, 646, 715, 761
CviQI GTAC 4 cut(s) 400, 751, 845, 881
DdeI CTNAG 6 cut(s) 81, 264, 493, 668, 998, 1008
DpnI GATC 4 cut(s) 322, 435, 935, 964
DpnII GATC 4 cut(s) 320, 433, 933, 962
Ecl136II GAGCTC 1 cut(s) 836
Eco24I GRGCYC 2 cut(s) 688, 838
Eco31I GGTCTC 1 cut(s) 872
Eco47I GGWCC 3 cut(s) 257, 479, 611
Eco53kI GAGCTC 1 cut(s) 836
Eco57I CTGAAG 2 cut(s) 150, 978
EcoICRI GAGCTC 1 cut(s) 836
EcoO109I RGGNCCY 1 cut(s) 257
EcoRII CCWGG 5 cut(s) 129, 388, 602, 790, 1036
EcoT38I GRGCYC 2 cut(s) 688, 838
FaeI CATG 7 cut(s) 93, 242, 442, 530, 649, 718, 764
FaqI GGGAC 1 cut(s) 597
FatI CATG 7 cut(s) 89, 238, 438, 526, 645, 714, 760
FblI GTMKAC 2 cut(s) 67, 953
Fnu4HI GCNGC 6 cut(s) 15, 490, 531, 588, 852, 925
FokI GGATG 2 cut(s) 25, 715
FriOI GRGCYC 2 cut(s) 688, 838
Fsp4HI GCNGC 6 cut(s) 15, 490, 531, 588, 852, 925
FspBI CTAG 1 cut(s) 642
GlaI GCGC 1 cut(s) 6
GluI GCNGC 6 cut(s) 15, 490, 531, 588, 852, 925
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 2 cut(s) 388, 412
HapII CCGG 1 cut(s) 776
HhaI GCGC 1 cut(s) 7
Hin1II CATG 7 cut(s) 93, 242, 442, 530, 649, 718, 764
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 2 cut(s) 457, 954
HindII GTYRAC 2 cut(s) 457, 954
HinfI GANTC 4 cut(s) 638, 743, 787, 906
HpaII CCGG 1 cut(s) 776
HphI GGTGA 2 cut(s) 167, 580
Hpy166II GTNNAC 3 cut(s) 68, 457, 954
Hpy188I TCNGA 5 cut(s) 84, 295, 406, 496, 999
Hpy188III TCNNGA 5 cut(s) 97, 635, 776, 859, 1055
Hpy8I GTNNAC 3 cut(s) 68, 457, 954
HpyAV CCTTC 3 cut(s) 270, 626, 953
HpyCH4III ACNGT 2 cut(s) 151, 307
HpyCH4IV ACGT 2 cut(s) 270, 559
HpyCH4V TGCA 8 cut(s) 14, 57, 89, 470, 596, 914, 1079, 1115
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 587, 593, 1076, 1112
HpyF3I CTNAG 6 cut(s) 81, 264, 493, 668, 998, 1008
HpySE526I ACGT 2 cut(s) 270, 559
Hsp92II CATG 7 cut(s) 93, 242, 442, 530, 649, 718, 764
HspAI GCGC 1 cut(s) 5
Kpn2I TCCGGA 1 cut(s) 775
Kzo9I GATC 4 cut(s) 320, 433, 933, 962
LmnI GCTCC 4 cut(s) 235, 833, 1084, 1120
Lsp1109I GCAGC 4 cut(s) 26, 574, 838, 936
MaeI CTAG 1 cut(s) 642
MaeII ACGT 2 cut(s) 270, 559
MaeIII GTNAC 1 cut(s) 784
MalI GATC 4 cut(s) 322, 435, 935, 964
MboI GATC 4 cut(s) 320, 433, 933, 962
MboII GAAGA 4 cut(s) 21, 156, 323, 943
MfeI CAATTG 1 cut(s) 738
MflI RGATCY 2 cut(s) 933, 962
MhlI GDGCHC 4 cut(s) 49, 688, 838, 1045
MluCI AATT 9 cut(s) 73, 111, 200, 211, 361, 446, 738, 795, 896
MlyI GAGTC 2 cut(s) 781, 900
MmeI TCCRAC 1 cut(s) 883
MroI TCCGGA 1 cut(s) 775
MseI TTAA 3 cut(s) 219, 360, 539
MspI CCGG 1 cut(s) 776
MspR9I CCNGG 5 cut(s) 131, 390, 604, 792, 1038
MunI CAATTG 1 cut(s) 738
Mva1269I GAATGC 1 cut(s) 17
MvaI CCWGG 5 cut(s) 131, 390, 604, 792, 1038
MwoI GCNNNNNNNGC 5 cut(s) 11, 587, 593, 1076, 1112
NdeII GATC 4 cut(s) 320, 433, 933, 962
NlaIII CATG 7 cut(s) 93, 242, 442, 530, 649, 718, 764
NlaIV GGNNCC 4 cut(s) 258, 613, 676, 1035
NmuCI GTSAC 1 cut(s) 784
NspI RCATGY 4 cut(s) 93, 530, 718, 764
PaeI GCATGC 2 cut(s) 93, 530
PciI ACATGT 1 cut(s) 760
PctI GAATGC 1 cut(s) 17
PfeI GAWTC 2 cut(s) 638, 743
PfoI TCCNGGA 1 cut(s) 790
PkrI GCNGC 6 cut(s) 16, 491, 532, 589, 853, 926
PleI GAGTC 2 cut(s) 781, 900
PpsI GAGTC 2 cut(s) 781, 900
PpuMI RGGWCCY 1 cut(s) 257
PscI ACATGT 1 cut(s) 760
Psp124BI GAGCTC 1 cut(s) 838
Psp5II RGGWCCY 1 cut(s) 257
Psp6I CCWGG 5 cut(s) 129, 388, 602, 790, 1036
PspGI CCWGG 5 cut(s) 129, 388, 602, 790, 1036
PspN4I GGNNCC 4 cut(s) 258, 613, 676, 1035
PspPI GGNCC 3 cut(s) 257, 479, 611
PspPPI RGGWCCY 1 cut(s) 257
PstI CTGCAG 1 cut(s) 16
PsuI RGATCY 2 cut(s) 933, 962
RsaI GTAC 4 cut(s) 401, 752, 846, 882
RsaNI GTAC 4 cut(s) 400, 751, 845, 881
SacI GAGCTC 1 cut(s) 838
SalI GTCGAC 1 cut(s) 952
SaqAI TTAA 3 cut(s) 219, 360, 539
SatI GCNGC 6 cut(s) 15, 490, 531, 588, 852, 925
Sau3AI GATC 4 cut(s) 320, 433, 933, 962
Sau96I GGNCC 3 cut(s) 257, 479, 611
SchI GAGTC 2 cut(s) 781, 900
ScrFI CCNGG 5 cut(s) 131, 390, 604, 792, 1038
SduI GDGCHC 4 cut(s) 49, 688, 838, 1045
SfcI CTRYAG 1 cut(s) 12
SinI GGWCC 3 cut(s) 257, 479, 611
SmlI CTYRAG 1 cut(s) 1053
SmoI CTYRAG 1 cut(s) 1053
SphI GCATGC 2 cut(s) 93, 530
Sse9I AATT 9 cut(s) 73, 111, 200, 211, 361, 446, 738, 795, 896
SsiI CCGC 3 cut(s) 489, 531, 566
SspMI CTAG 1 cut(s) 642
SstI GAGCTC 1 cut(s) 838
StyD4I CCNGG 5 cut(s) 129, 388, 602, 790, 1036
TaaI ACNGT 2 cut(s) 151, 307
TaiI ACGT 2 cut(s) 273, 562
TaqI TCGA 3 cut(s) 634, 801, 953
TasI AATT 9 cut(s) 73, 111, 200, 211, 361, 446, 738, 795, 896
TatI WGTACW 2 cut(s) 750, 880
TauI GCSGC 2 cut(s) 492, 533
TfiI GAWTC 2 cut(s) 638, 743
Tru1I TTAA 3 cut(s) 219, 360, 539
Tru9I TTAA 3 cut(s) 219, 360, 539
TscAI CASTG 4 cut(s) 154, 310, 433, 822
TseFI GTSAC 1 cut(s) 784
TseI GCWGC 4 cut(s) 14, 587, 851, 924
Tsp45I GTSAC 1 cut(s) 784
TspDTI ATGAA 2 cut(s) 255, 451
TspRI CASTG 4 cut(s) 154, 310, 433, 822
VpaK11BI GGWCC 3 cut(s) 257, 479, 611
XapI RAATTY 4 cut(s) 200, 211, 446, 896
XceI RCATGY 4 cut(s) 93, 530, 718, 764
XcmI CCANNNNNNNNNTGG 1 cut(s) 148
XmiI GTMKAC 2 cut(s) 67, 953
XspI CTAG 1 cut(s) 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.