Rw7G003500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0014291
Physical Location & Seq
Forward (+)
2804128 .. 2807200
3073 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G003500.1

Sequence Viewer

Length: 1128 bp
ATGGCGTTCTCTGCTGCATTCCATACATGTTCACGACCTTCCCTTTTTCTTTCCTGCAGAACCCATAAACCCAATTTGCCTCAGACTTCTTGCTTCCACAGAACCCTAACGGTTAGGGCTTCAACCACTTTGGACTACTCCAAGCTCTCTGTGGACGATAAAGCTTCAGCTCCATCAAAGACCAATAGTTGGCAATGGAAATTCAAGGATAATTCTATTAACATATACTATGAGGAGTATGAAAAGGAGAGAAAGGGTCCTTGTAAGAATATCCTTATGATACCAACGATTTCTGATGTTAGCACAGTTGAAGAATGGAGAGCAGTGGCAAGTAATATTGTTCAGCAAGTTGGTAATGTTAATTGGCGAGCTACTATCGTAGATTGGCCTGGTCTAGGGTACTCTGATAGGCCAAAGATGGACTACACTGCTGATGTGATGGAGAAATTTCTGGTCGACTTCATCAATTCAGTTGATGGTCCTCTAAGTGGCTCAGAAAATGATCTTGTGGTATTTGGAGGAGGACATGCTGCCACTTTAACTATCCGTGCTGCAAAGCGGGGTGCAGTAAAACCGAAAGCTATAGCTGCTATTGCACCCACCTGGGCAGGTCCCCTTCCTATTGTGTTTGGTCGAGATTCTAGCATGGAAACAAGGTATGGACTGCTTAGAGGCACCTTAAGAGCCCCTGCTTTAGGCTGGATGATGTATAACATGCTTGTCAGCAATAAGAAATCAATTGAATCTCAATACAAATCCCACGTCTATTCAAATCCTGACAATGTGACTCCTGGAATTATTGAAAGTAGATATGCCCTAACCAAAAGGAAAGGTGCTCGCTACGCGCCTGCTGCTTTCTTGACCGGTCTTCTTGATGCTGTACAATCCCGAGAGGAATTTCTTGAACTCTTTGCTGATATGGCAAACAAAAAGATACCGGTAGTTGTGGTGTCCACTAAAGGATCTCCAAAGAGGTCAAAAGCAGAGATGGAGGCTCTCAGGGAAGCCAAGGGAGTTAGTAAGTTTGTTGAGGTACCAGGCGCTCTTCTTCCGCAAGAGGAGTATCCAGCTATGGTTGCTGAGGAGCTTTACCAGTTCTTGCAAGAAAACTTTGAATCCAAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_6

Protein Analysis

375

Amino Acids

41.73

Weight (kDa)

8.92

Isoelectric Point (pI)

40.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014291)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74640
fragaria_vesca FvH4_5g14981
malus_domestica MD14G1199800.v1.1
prunus_persica Prupe.5G193100_v2.0.a1
pyrus_communis pycom14g16570
rosa_chinensis RchiOBHm_Chr7g0181351
rosa_laevigata RLG00000005196
rosa_multiflora Rmu_co8287351.1_g000001 Rmu_co8345699.1_g000001 Rmu_sc0013944.1_g000001
rosa_roxburghii Rroxscaffold_3G00272110
rosa_rugosa Rorug06G0440400
rosa_samantha Rh7AG042400 Rh7BG041300 Rh7CG043700 Rh7DG042200
rosa_wichuraiana Rw7G003500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 599
Acc65I GGTACC 1 cut(s) 1033
AccB1I GGYRCC 2 cut(s) 674, 1033
AccB7I CCANNNNNTGG 1 cut(s) 189
AccI GTMKAC 1 cut(s) 456
AccII CGCG 1 cut(s) 845
AciI CCGC 2 cut(s) 559, 1052
AclWI GGATC 1 cut(s) 970
AcsI RAATTY 3 cut(s) 200, 446, 896
AcuI CTGAAG 1 cut(s) 150
AfaI GTAC 3 cut(s) 401, 882, 1035
AfiI CCNNNNNNNGG 4 cut(s) 189, 395, 488, 695
AflII CTTAAG 1 cut(s) 679
AflIII ACRYGT 1 cut(s) 26
AgeI ACCGGT 2 cut(s) 863, 937
AgsI TTSAA 8 cut(s) 123, 205, 311, 743, 771, 803, 905, 1115
AjiI CACGTC 1 cut(s) 763
AjnI CCWGG 4 cut(s) 388, 602, 790, 1036
AluBI AGCT 8 cut(s) 145, 164, 170, 371, 581, 587, 1070, 1087
AluI AGCT 8 cut(s) 145, 164, 170, 371, 581, 587, 1070, 1087
Alw21I GWGCWC 1 cut(s) 838
AlwI GGATC 1 cut(s) 970
Ama87I CYCGRG 1 cut(s) 888
AoxI GGCC 2 cut(s) 386, 410
ApeKI GCWGC 5 cut(s) 14, 530, 551, 587, 851
ApoI RAATTY 3 cut(s) 200, 446, 896
ArsI GACNNNNNNTTYG 2 cut(s) 747, 779
AsiGI ACCGGT 2 cut(s) 863, 937
Asp718I GGTACC 1 cut(s) 1033
AspLEI GCGC 2 cut(s) 847, 1043
AspS9I GGNCC 3 cut(s) 257, 479, 611
AvaI CYCGRG 1 cut(s) 888
AvaII GGWCC 3 cut(s) 257, 479, 611
BanI GGYRCC 2 cut(s) 674, 1033
BanII GRGCYC 1 cut(s) 688
BbsI GAAGAC 1 cut(s) 860
Bbv12I GWGCWC 1 cut(s) 838
BbvCI CCTCAGC 1 cut(s) 1080
BbvI GCAGC 4 cut(s) 517, 538, 574, 838
BccI CCATC 5 cut(s) 181, 412, 433, 470, 982
BciT130I CCWGG 4 cut(s) 390, 604, 792, 1038
BciVI GTATCC 1 cut(s) 1074
BfaI CTAG 2 cut(s) 395, 642
BfmI CTRYAG 2 cut(s) 55, 582
BfoI RGCGCY 1 cut(s) 1044
BfrI CTTAAG 1 cut(s) 679
BfuAI ACCTGC 1 cut(s) 599
BfuI GTATCC 1 cut(s) 1074
BisI GCNGC 5 cut(s) 15, 531, 552, 588, 852
BlsI GCNGC 5 cut(s) 16, 532, 553, 589, 853
Bme1390I CCNGG 4 cut(s) 390, 604, 792, 1038
Bme18I GGWCC 3 cut(s) 257, 479, 611
BmeT110I CYCGRG 1 cut(s) 888
BmgBI CACGTC 1 cut(s) 763
BmgT120I GGNCC 3 cut(s) 257, 479, 611
BmiI GGNNCC 4 cut(s) 258, 613, 676, 1035
BmrFI CCNGG 4 cut(s) 390, 604, 792, 1038
BmsI GCATC 1 cut(s) 865
BpiI GAAGAC 1 cut(s) 860
Bpu10I CCTNAGC 1 cut(s) 1080
BsaJI CCNNGG 2 cut(s) 603, 1008
BsaWI WCCGGW 2 cut(s) 863, 937
Bsc4I CCNNNNNNNGG 4 cut(s) 189, 395, 488, 695
Bse118I RCCGGY 2 cut(s) 863, 937
Bse1I ACTGG 1 cut(s) 1093
Bse3DI GCAATG 1 cut(s) 200
BseBI CCWGG 4 cut(s) 390, 604, 792, 1038
BseDI CCNNGG 2 cut(s) 603, 1008
BseGI GGATG 1 cut(s) 708
BseLI CCNNNNNNNGG 4 cut(s) 189, 395, 488, 695
BseMI GCAATG 1 cut(s) 200
BseMII CTCAG 4 cut(s) 95, 507, 1012, 1071
BseNI ACTGG 1 cut(s) 1093
BseRI GAGGAG 4 cut(s) 248, 534, 1073, 1097
BseXI GCAGC 4 cut(s) 517, 538, 574, 838
BsgI GTGCAG 1 cut(s) 585
Bsh1236I CGCG 1 cut(s) 845
BshFI GGCC 2 cut(s) 388, 412
BshNI GGYRCC 2 cut(s) 674, 1033
BshTI ACCGGT 2 cut(s) 863, 937
BsiHKAI GWGCWC 1 cut(s) 838
BsiHKCI CYCGRG 1 cut(s) 888
BsiSI CCGG 2 cut(s) 864, 938
BslFI GGGAC 1 cut(s) 597
BslI CCNNNNNNNGG 4 cut(s) 189, 395, 488, 695
BsmFI GGGAC 1 cut(s) 597
BsmI GAATGC 1 cut(s) 17
BsnI GGCC 2 cut(s) 388, 412
BsoBI CYCGRG 1 cut(s) 888
Bsp1286I GDGCHC 2 cut(s) 688, 838
Bsp1407I TGTACA 1 cut(s) 880
Bsp143I GATC 2 cut(s) 502, 962
BspACI CCGC 2 cut(s) 559, 1052
BspANI GGCC 2 cut(s) 388, 412
BspCNI CTCAG 4 cut(s) 94, 506, 1011, 1072
BspFNI CGCG 1 cut(s) 845
BspLI GGNNCC 4 cut(s) 258, 613, 676, 1035
BspMAI CTGCAG 1 cut(s) 59
BspMI ACCTGC 1 cut(s) 599
BspPI GGATC 1 cut(s) 970
BspQI GCTCTTC 1 cut(s) 1050
BspT107I GGYRCC 2 cut(s) 674, 1033
BspTI CTTAAG 1 cut(s) 679
BsrDI GCAATG 1 cut(s) 200
BsrFI RCCGGY 2 cut(s) 863, 937
BsrGI TGTACA 1 cut(s) 880
BsrI ACTGG 1 cut(s) 1093
BssAI RCCGGY 2 cut(s) 863, 937
BssECI CCNNGG 2 cut(s) 603, 1008
BssMI GATC 2 cut(s) 502, 962
BssT1I CCWWGG 1 cut(s) 1008
Bst2UI CCWGG 4 cut(s) 390, 604, 792, 1038
Bst4CI ACNGT 2 cut(s) 112, 307
Bst6I CTCTTC 1 cut(s) 1050
BstAFI CTTAAG 1 cut(s) 679
BstAUI TGTACA 1 cut(s) 880
BstC8I GCNNGC 3 cut(s) 369, 838, 849
BstDEI CTNAG 6 cut(s) 81, 485, 493, 668, 998, 1080
BstENI CCTNNNNNAGG 2 cut(s) 393, 693
BstF5I GGATG 1 cut(s) 708
BstFNI CGCG 1 cut(s) 845
BstH2I RGCGCY 1 cut(s) 1044
BstHHI GCGC 2 cut(s) 847, 1043
BstKTI GATC 2 cut(s) 505, 965
BstMBI GATC 2 cut(s) 502, 962
BstMWI GCNNNNNNNGC 7 cut(s) 11, 587, 593, 842, 851, 920, 1076
BstNI CCWGG 4 cut(s) 390, 604, 792, 1038
BstNSI RCATGY 3 cut(s) 30, 530, 718
BstSCI CCNGG 4 cut(s) 388, 602, 790, 1036
BstSFI CTRYAG 2 cut(s) 55, 582
BstUI CGCG 1 cut(s) 845
BstV1I GCAGC 4 cut(s) 517, 538, 574, 838
BstV2I GAAGAC 1 cut(s) 860
BstX2I RGATCY 1 cut(s) 962
BstYI RGATCY 1 cut(s) 962
BsuI GTATCC 1 cut(s) 1074
BsuRI GGCC 2 cut(s) 388, 412
BtrI CACGTC 1 cut(s) 763
BtsCI GGATG 1 cut(s) 708
BtsI GCAGTG 2 cut(s) 330, 426
BtsIMutI CAGTG 2 cut(s) 330, 426
BveI ACCTGC 1 cut(s) 599
Cac8I GCNNGC 3 cut(s) 369, 838, 849
CfoI GCGC 2 cut(s) 847, 1043
Cfr10I RCCGGY 2 cut(s) 863, 937
Cfr13I GGNCC 3 cut(s) 257, 479, 611
Csp6I GTAC 3 cut(s) 400, 881, 1034
CspAI ACCGGT 2 cut(s) 863, 937
CviAII CATG 4 cut(s) 27, 527, 646, 715
CviQI GTAC 3 cut(s) 400, 881, 1034
DdeI CTNAG 6 cut(s) 81, 485, 493, 668, 998, 1080
DpnI GATC 2 cut(s) 504, 964
DpnII GATC 2 cut(s) 502, 962
Eam1104I CTCTTC 1 cut(s) 1050
EarI CTCTTC 1 cut(s) 1050
Eco130I CCWWGG 1 cut(s) 1008
Eco24I GRGCYC 1 cut(s) 688
Eco47I GGWCC 3 cut(s) 257, 479, 611
Eco57I CTGAAG 1 cut(s) 150
Eco88I CYCGRG 1 cut(s) 888
EcoNI CCTNNNNNAGG 2 cut(s) 393, 693
EcoO109I RGGNCCY 2 cut(s) 257, 611
EcoRII CCWGG 4 cut(s) 388, 602, 790, 1036
EcoT14I CCWWGG 1 cut(s) 1008
EcoT38I GRGCYC 1 cut(s) 688
ErhI CCWWGG 1 cut(s) 1008
FaeI CATG 4 cut(s) 30, 530, 649, 718
FaqI GGGAC 1 cut(s) 597
FatI CATG 4 cut(s) 26, 526, 645, 714
FauI CCCGC 1 cut(s) 552
FblI GTMKAC 1 cut(s) 456
Fnu4HI GCNGC 5 cut(s) 15, 531, 552, 588, 852
FokI GGATG 1 cut(s) 715
FriOI GRGCYC 1 cut(s) 688
Fsp4HI GCNGC 5 cut(s) 15, 531, 552, 588, 852
FspBI CTAG 2 cut(s) 395, 642
GlaI GCGC 2 cut(s) 846, 1042
GluI GCNGC 5 cut(s) 15, 531, 552, 588, 852
HaeII RGCGCY 1 cut(s) 1044
HaeIII GGCC 2 cut(s) 388, 412
HapII CCGG 2 cut(s) 864, 938
HhaI GCGC 2 cut(s) 847, 1043
Hin1II CATG 4 cut(s) 30, 530, 649, 718
Hin6I GCGC 2 cut(s) 845, 1041
HinP1I GCGC 2 cut(s) 845, 1041
HincII GTYRAC 1 cut(s) 457
HindII GTYRAC 1 cut(s) 457
HindIII AAGCTT 1 cut(s) 162
HinfI GANTC 4 cut(s) 638, 743, 787, 1115
HpaII CCGG 2 cut(s) 864, 938
Hpy166II GTNNAC 4 cut(s) 32, 154, 457, 954
Hpy188I TCNGA 4 cut(s) 84, 295, 406, 496
Hpy188III TCNNGA 7 cut(s) 33, 635, 776, 859, 872, 888, 902
Hpy8I GTNNAC 4 cut(s) 32, 154, 457, 954
HpyAV CCTTC 2 cut(s) 48, 626
HpyCH4III ACNGT 2 cut(s) 112, 307
HpyCH4IV ACGT 1 cut(s) 762
HpyCH4V TGCA 6 cut(s) 17, 57, 554, 566, 596, 1102
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 587, 593, 842, 851, 920, 1076
HpyF3I CTNAG 6 cut(s) 81, 485, 493, 668, 998, 1080
HpySE526I ACGT 1 cut(s) 762
Hsp92II CATG 4 cut(s) 30, 530, 649, 718
HspAI GCGC 2 cut(s) 845, 1041
KpnI GGTACC 1 cut(s) 1037
Kzo9I GATC 2 cut(s) 502, 962
LguI GCTCTTC 1 cut(s) 1050
LmnI GCTCC 2 cut(s) 175, 1084
Lsp1109I GCAGC 4 cut(s) 517, 538, 574, 838
LweI GCATC 1 cut(s) 865
MaeI CTAG 2 cut(s) 395, 642
MaeII ACGT 1 cut(s) 762
MaeIII GTNAC 1 cut(s) 784
MalI GATC 2 cut(s) 504, 964
MboI GATC 2 cut(s) 502, 962
MboII GAAGA 4 cut(s) 323, 860, 1037, 1040
MfeI CAATTG 1 cut(s) 738
MflI RGATCY 1 cut(s) 962
MhlI GDGCHC 2 cut(s) 688, 838
MluCI AATT 9 cut(s) 73, 200, 211, 361, 446, 466, 738, 795, 896
MlyI GAGTC 1 cut(s) 781
MseI TTAA 4 cut(s) 219, 360, 539, 680
MspCI CTTAAG 1 cut(s) 679
MspI CCGG 2 cut(s) 864, 938
MspR9I CCNGG 4 cut(s) 390, 604, 792, 1038
MunI CAATTG 1 cut(s) 738
Mva1269I GAATGC 1 cut(s) 17
MvaI CCWGG 4 cut(s) 390, 604, 792, 1038
MvnI CGCG 1 cut(s) 845
MwoI GCNNNNNNNGC 7 cut(s) 11, 587, 593, 842, 851, 920, 1076
NdeII GATC 2 cut(s) 502, 962
NlaIII CATG 4 cut(s) 30, 530, 649, 718
NlaIV GGNNCC 4 cut(s) 258, 613, 676, 1035
NmuCI GTSAC 1 cut(s) 784
NspI RCATGY 3 cut(s) 30, 530, 718
PciI ACATGT 1 cut(s) 26
PciSI GCTCTTC 1 cut(s) 1050
PctI GAATGC 1 cut(s) 17
PfeI GAWTC 3 cut(s) 638, 743, 1115
PflMI CCANNNNNTGG 1 cut(s) 189
PfoI TCCNGGA 1 cut(s) 790
PinAI ACCGGT 2 cut(s) 863, 937
PkrI GCNGC 5 cut(s) 16, 532, 553, 589, 853
PleI GAGTC 1 cut(s) 781
PpsI GAGTC 1 cut(s) 781
PpuMI RGGWCCY 2 cut(s) 257, 611
PscI ACATGT 1 cut(s) 26
Psp5II RGGWCCY 2 cut(s) 257, 611
Psp6I CCWGG 4 cut(s) 388, 602, 790, 1036
PspGI CCWGG 4 cut(s) 388, 602, 790, 1036
PspN4I GGNNCC 4 cut(s) 258, 613, 676, 1035
PspPI GGNCC 3 cut(s) 257, 479, 611
PspPPI RGGWCCY 2 cut(s) 257, 611
PstI CTGCAG 1 cut(s) 59
PsuI RGATCY 1 cut(s) 962
RsaI GTAC 3 cut(s) 401, 882, 1035
RsaNI GTAC 3 cut(s) 400, 881, 1034
SalI GTCGAC 1 cut(s) 455
SapI GCTCTTC 1 cut(s) 1050
SaqAI TTAA 4 cut(s) 219, 360, 539, 680
SatI GCNGC 5 cut(s) 15, 531, 552, 588, 852
Sau3AI GATC 2 cut(s) 502, 962
Sau96I GGNCC 3 cut(s) 257, 479, 611
SchI GAGTC 1 cut(s) 781
ScrFI CCNGG 4 cut(s) 390, 604, 792, 1038
SduI GDGCHC 2 cut(s) 688, 838
SfaNI GCATC 1 cut(s) 865
SfcI CTRYAG 2 cut(s) 55, 582
SinI GGWCC 3 cut(s) 257, 479, 611
SmlI CTYRAG 1 cut(s) 679
SmoI CTYRAG 1 cut(s) 679
Sse9I AATT 9 cut(s) 73, 200, 211, 361, 446, 466, 738, 795, 896
SsiI CCGC 2 cut(s) 559, 1052
SspI AATATT 1 cut(s) 337
SspMI CTAG 2 cut(s) 395, 642
StyD4I CCNGG 4 cut(s) 388, 602, 790, 1036
StyI CCWWGG 1 cut(s) 1008
TaaI ACNGT 2 cut(s) 112, 307
TaiI ACGT 1 cut(s) 765
TaqI TCGA 2 cut(s) 456, 634
TasI AATT 9 cut(s) 73, 200, 211, 361, 446, 466, 738, 795, 896
TatI WGTACW 1 cut(s) 880
TfiI GAWTC 3 cut(s) 638, 743, 1115
Tru1I TTAA 4 cut(s) 219, 360, 539, 680
Tru9I TTAA 4 cut(s) 219, 360, 539, 680
TscAI CASTG 2 cut(s) 330, 433
TseFI GTSAC 1 cut(s) 784
TseI GCWGC 5 cut(s) 14, 530, 551, 587, 851
Tsp45I GTSAC 1 cut(s) 784
TspDTI ATGAA 2 cut(s) 255, 451
TspGWI ACGGA 1 cut(s) 536
TspRI CASTG 2 cut(s) 330, 433
Van91I CCANNNNNTGG 1 cut(s) 189
Vha464I CTTAAG 1 cut(s) 679
VpaK11BI GGWCC 3 cut(s) 257, 479, 611
XagI CCTNNNNNAGG 2 cut(s) 393, 693
XapI RAATTY 3 cut(s) 200, 446, 896
XceI RCATGY 3 cut(s) 30, 530, 718
XcmI CCANNNNNNNNNTGG 1 cut(s) 148
XmiI GTMKAC 1 cut(s) 456
XspI CTAG 2 cut(s) 395, 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.