Rh7BG041300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0014291
Physical Location & Seq
Forward (+)
2606272 .. 2611062
4791 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG041300.1

Sequence Viewer

Length: 882 bp
ATGGAACTATTATGGACACATATCTCATCTGGTTCTCAGAATCCCAGCAGAAAAATCTCAGTAAAAACCAGTGGTCAGCATCTTCCTCCACAACTCCAAGCTCACAAAGTCCCTGATACTATTTTCTCTCTCCATTTCTGCACCATATCCATGGCGTTCTCTGCTGCATTCTATACGTGTTCACGACCTTCCCTTATTCTTTCCTGCAGAACCCATAAACCCAATTTCTCTCAGACTTCTTGCTTCCACAGAACCCTAACGGTTAGGGCTTCAACCACTTTGGACTACTCCAAGCTCTCTGTGGACGATAAAGCTTCAGCTCCATCAAAGACCAATAGTTGGCAATGGAAATTCAAGGATAATTCTATTAACATATACTATGAGGAGTATGAAAAGGAGAGAAAGGGTCCTTGTAAGAATATCCTTATGATACCAACGATTTCTGATGTTAGCACAGTTGAAGAATGGAGAGCAGTAGCAAGTAATATTGTTCAGCAAGTTGGTAATGTTAATTGGCGAGCTACTATCGTAGATTGGCCTGGTCTAGGGTACTCTGATAGGCCAAAGATGGACTACACTGCTGATGTGATGGAGAAATTTCTGGTCGACTTCATCAATTCAGTTGATGGTCCTCTAAGTGGCTCAGAAAATGATCTTGTGGTATTTGGAGGAGGACATGCTGCCACTTTAACTATCCGTGCTGCAAAGCGGGGCGCAGTAAAACCTAAAGCGATAGCTGCTATTGCACCCACCTGGGCAGGTCCCCTTCCTATTGTGTTTGGTCGAGATTCTAGCATGGAAACAAGGTATGGACTGCTTAGAGGCACCTTAAGAGCCCCTGCTTTAGGCTGGATGATGTATAACATGCTTGTCAGCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_6

Protein Analysis

293

Amino Acids

32.56

Weight (kDa)

9.24

Isoelectric Point (pI)

34.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014291)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74640
fragaria_vesca FvH4_5g14981
malus_domestica MD14G1199800.v1.1
prunus_persica Prupe.5G193100_v2.0.a1
pyrus_communis pycom14g16570
rosa_chinensis RchiOBHm_Chr7g0181351
rosa_laevigata RLG00000005196
rosa_multiflora Rmu_co8287351.1_g000001 Rmu_co8345699.1_g000001 Rmu_sc0013944.1_g000001
rosa_roxburghii Rroxscaffold_3G00272110
rosa_rugosa Rorug06G0440400
rosa_samantha Rh7AG042400 Rh7BG041300 Rh7CG043700 Rh7DG042200
rosa_wichuraiana Rw7G003500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 749
AccB1I GGYRCC 1 cut(s) 824
AccB7I CCANNNNNTGG 1 cut(s) 339
AccI GTMKAC 1 cut(s) 606
AciI CCGC 1 cut(s) 709
AcsI RAATTY 2 cut(s) 350, 596
AcuI CTGAAG 1 cut(s) 300
AfaI GTAC 1 cut(s) 551
AfiI CCNNNNNNNGG 4 cut(s) 339, 545, 638, 845
AflII CTTAAG 1 cut(s) 829
AflIII ACRYGT 1 cut(s) 176
AgsI TTSAA 3 cut(s) 273, 355, 461
AjnI CCWGG 2 cut(s) 538, 752
AluBI AGCT 6 cut(s) 101, 295, 314, 320, 521, 737
AluI AGCT 6 cut(s) 101, 295, 314, 320, 521, 737
AoxI GGCC 2 cut(s) 536, 560
ApeKI GCWGC 4 cut(s) 164, 680, 701, 737
ApoI RAATTY 2 cut(s) 350, 596
AspLEI GCGC 1 cut(s) 716
AspS9I GGNCC 3 cut(s) 407, 629, 761
AvaII GGWCC 3 cut(s) 407, 629, 761
BanI GGYRCC 1 cut(s) 824
BanII GRGCYC 1 cut(s) 838
BbvI GCAGC 4 cut(s) 151, 667, 688, 724
BccI CCATC 4 cut(s) 331, 562, 583, 620
BciT130I CCWGG 2 cut(s) 540, 754
BfaI CTAG 2 cut(s) 545, 792
BfmI CTRYAG 1 cut(s) 205
BfrI CTTAAG 1 cut(s) 829
BfuAI ACCTGC 1 cut(s) 749
BisI GCNGC 4 cut(s) 165, 681, 702, 738
BlsI GCNGC 4 cut(s) 166, 682, 703, 739
Bme1390I CCNGG 2 cut(s) 540, 754
Bme18I GGWCC 3 cut(s) 407, 629, 761
BmgT120I GGNCC 3 cut(s) 407, 629, 761
BmiI GGNNCC 3 cut(s) 408, 763, 826
BmrFI CCNGG 2 cut(s) 540, 754
BmsI GCATC 1 cut(s) 88
BsaAI YACGTR 1 cut(s) 177
BsaJI CCNNGG 2 cut(s) 150, 753
Bsc4I CCNNNNNNNGG 4 cut(s) 339, 545, 638, 845
Bse1I ACTGG 1 cut(s) 69
Bse3DI GCAATG 1 cut(s) 350
BseBI CCWGG 2 cut(s) 540, 754
BseDI CCNNGG 2 cut(s) 150, 753
BseGI GGATG 1 cut(s) 858
BseLI CCNNNNNNNGG 4 cut(s) 339, 545, 638, 845
BseMI GCAATG 1 cut(s) 350
BseMII CTCAG 4 cut(s) 50, 72, 245, 657
BseNI ACTGG 1 cut(s) 69
BseRI GAGGAG 2 cut(s) 398, 684
BseXI GCAGC 4 cut(s) 151, 667, 688, 724
BseYI CCCAGC 1 cut(s) 44
BsgI GTGCAG 1 cut(s) 124
BshFI GGCC 2 cut(s) 538, 562
BshNI GGYRCC 1 cut(s) 824
BslFI GGGAC 2 cut(s) 95, 747
BslI CCNNNNNNNGG 4 cut(s) 339, 545, 638, 845
BsmFI GGGAC 2 cut(s) 95, 747
BsmI GAATGC 1 cut(s) 167
BsnI GGCC 2 cut(s) 538, 562
Bsp1286I GDGCHC 1 cut(s) 838
Bsp143I GATC 1 cut(s) 652
Bsp19I CCATGG 1 cut(s) 150
BspACI CCGC 1 cut(s) 709
BspANI GGCC 2 cut(s) 538, 562
BspCNI CTCAG 4 cut(s) 49, 71, 244, 656
BspLI GGNNCC 3 cut(s) 408, 763, 826
BspMAI CTGCAG 1 cut(s) 209
BspMI ACCTGC 1 cut(s) 749
BspT107I GGYRCC 1 cut(s) 824
BspTI CTTAAG 1 cut(s) 829
BsrDI GCAATG 1 cut(s) 350
BsrI ACTGG 1 cut(s) 69
BssECI CCNNGG 2 cut(s) 150, 753
BssMI GATC 1 cut(s) 652
BssT1I CCWWGG 1 cut(s) 150
Bst2UI CCWGG 2 cut(s) 540, 754
Bst4CI ACNGT 2 cut(s) 262, 457
BstAFI CTTAAG 1 cut(s) 829
BstBAI YACGTR 1 cut(s) 177
BstC8I GCNNGC 1 cut(s) 519
BstDEI CTNAG 6 cut(s) 36, 58, 231, 635, 643, 818
BstDSI CCRYGG 1 cut(s) 150
BstENI CCTNNNNNAGG 2 cut(s) 543, 843
BstF5I GGATG 1 cut(s) 858
BstHHI GCGC 1 cut(s) 716
BstKTI GATC 1 cut(s) 655
BstMBI GATC 1 cut(s) 652
BstMWI GCNNNNNNNGC 3 cut(s) 161, 737, 743
BstNI CCWGG 2 cut(s) 540, 754
BstNSI RCATGY 2 cut(s) 680, 868
BstSCI CCNGG 2 cut(s) 538, 752
BstSFI CTRYAG 1 cut(s) 205
BstV1I GCAGC 4 cut(s) 151, 667, 688, 724
BstXI CCANNNNNNTGG 1 cut(s) 151
BsuRI GGCC 2 cut(s) 538, 562
BtgI CCRYGG 1 cut(s) 150
BtsCI GGATG 1 cut(s) 858
BtsI GCAGTG 1 cut(s) 576
BtsIMutI CAGTG 2 cut(s) 76, 576
BveI ACCTGC 1 cut(s) 749
Cac8I GCNNGC 1 cut(s) 519
CfoI GCGC 1 cut(s) 716
Cfr13I GGNCC 3 cut(s) 407, 629, 761
Csp6I GTAC 1 cut(s) 550
CviAII CATG 4 cut(s) 151, 677, 796, 865
CviQI GTAC 1 cut(s) 550
DdeI CTNAG 6 cut(s) 36, 58, 231, 635, 643, 818
DpnI GATC 1 cut(s) 654
DpnII GATC 1 cut(s) 652
Eco130I CCWWGG 1 cut(s) 150
Eco24I GRGCYC 1 cut(s) 838
Eco47I GGWCC 3 cut(s) 407, 629, 761
Eco57I CTGAAG 1 cut(s) 300
EcoNI CCTNNNNNAGG 2 cut(s) 543, 843
EcoO109I RGGNCCY 2 cut(s) 407, 761
EcoRII CCWGG 2 cut(s) 538, 752
EcoT14I CCWWGG 1 cut(s) 150
EcoT38I GRGCYC 1 cut(s) 838
ErhI CCWWGG 1 cut(s) 150
FaeI CATG 4 cut(s) 154, 680, 799, 868
FaqI GGGAC 2 cut(s) 95, 747
FatI CATG 4 cut(s) 150, 676, 795, 864
FauI CCCGC 1 cut(s) 702
FblI GTMKAC 1 cut(s) 606
Fnu4HI GCNGC 4 cut(s) 165, 681, 702, 738
FokI GGATG 1 cut(s) 865
FriOI GRGCYC 1 cut(s) 838
Fsp4HI GCNGC 4 cut(s) 165, 681, 702, 738
FspBI CTAG 2 cut(s) 545, 792
GlaI GCGC 1 cut(s) 715
GluI GCNGC 4 cut(s) 165, 681, 702, 738
GsaI CCCAGC 1 cut(s) 48
HaeIII GGCC 2 cut(s) 538, 562
HhaI GCGC 1 cut(s) 716
Hin1II CATG 4 cut(s) 154, 680, 799, 868
Hin6I GCGC 1 cut(s) 714
HinP1I GCGC 1 cut(s) 714
HincII GTYRAC 1 cut(s) 607
HindII GTYRAC 1 cut(s) 607
HindIII AAGCTT 1 cut(s) 312
HinfI GANTC 2 cut(s) 40, 788
Hpy166II GTNNAC 3 cut(s) 182, 304, 607
Hpy188I TCNGA 5 cut(s) 39, 234, 445, 556, 646
Hpy188III TCNNGA 2 cut(s) 183, 785
Hpy8I GTNNAC 3 cut(s) 182, 304, 607
HpyAV CCTTC 2 cut(s) 198, 776
HpyCH4III ACNGT 2 cut(s) 262, 457
HpyCH4IV ACGT 1 cut(s) 176
HpyCH4V TGCA 5 cut(s) 141, 167, 207, 704, 746
HpyF10VI GCNNNNNNNGC 3 cut(s) 161, 737, 743
HpyF3I CTNAG 6 cut(s) 36, 58, 231, 635, 643, 818
HpySE526I ACGT 1 cut(s) 176
Hsp92II CATG 4 cut(s) 154, 680, 799, 868
HspAI GCGC 1 cut(s) 714
Kzo9I GATC 1 cut(s) 652
LmnI GCTCC 1 cut(s) 325
Lsp1109I GCAGC 4 cut(s) 151, 667, 688, 724
LweI GCATC 1 cut(s) 88
MaeI CTAG 2 cut(s) 545, 792
MaeII ACGT 1 cut(s) 176
MalI GATC 1 cut(s) 654
MboI GATC 1 cut(s) 652
MboII GAAGA 2 cut(s) 74, 473
MhlI GDGCHC 1 cut(s) 838
MluCI AATT 7 cut(s) 223, 350, 361, 511, 596, 616, 877
MnlI CCTC 6 cut(s) 96, 376, 642, 662, 665, 815
MseI TTAA 4 cut(s) 369, 510, 689, 830
MslI CAYNNNNRTG 1 cut(s) 149
MspCI CTTAAG 1 cut(s) 829
MspR9I CCNGG 2 cut(s) 540, 754
Mva1269I GAATGC 1 cut(s) 167
MvaI CCWGG 2 cut(s) 540, 754
MwoI GCNNNNNNNGC 3 cut(s) 161, 737, 743
NcoI CCATGG 1 cut(s) 150
NdeII GATC 1 cut(s) 652
NlaIII CATG 4 cut(s) 154, 680, 799, 868
NlaIV GGNNCC 3 cut(s) 408, 763, 826
NspI RCATGY 2 cut(s) 680, 868
PctI GAATGC 1 cut(s) 167
PfeI GAWTC 2 cut(s) 40, 788
PflMI CCANNNNNTGG 1 cut(s) 339
PkrI GCNGC 4 cut(s) 166, 682, 703, 739
Ppu21I YACGTR 1 cut(s) 177
PpuMI RGGWCCY 2 cut(s) 407, 761
Psp5II RGGWCCY 2 cut(s) 407, 761
Psp6I CCWGG 2 cut(s) 538, 752
PspFI CCCAGC 1 cut(s) 44
PspGI CCWGG 2 cut(s) 538, 752
PspN4I GGNNCC 3 cut(s) 408, 763, 826
PspPI GGNCC 3 cut(s) 407, 629, 761
PspPPI RGGWCCY 2 cut(s) 407, 761
PstI CTGCAG 1 cut(s) 209
RsaI GTAC 1 cut(s) 551
RsaNI GTAC 1 cut(s) 550
RseI CAYNNNNRTG 1 cut(s) 149
SalI GTCGAC 1 cut(s) 605
SaqAI TTAA 4 cut(s) 369, 510, 689, 830
SatI GCNGC 4 cut(s) 165, 681, 702, 738
Sau3AI GATC 1 cut(s) 652
Sau96I GGNCC 3 cut(s) 407, 629, 761
ScrFI CCNGG 2 cut(s) 540, 754
SduI GDGCHC 1 cut(s) 838
SfaNI GCATC 1 cut(s) 88
SfcI CTRYAG 1 cut(s) 205
SinI GGWCC 3 cut(s) 407, 629, 761
SmiMI CAYNNNNRTG 1 cut(s) 149
SmlI CTYRAG 1 cut(s) 829
SmoI CTYRAG 1 cut(s) 829
Sse9I AATT 7 cut(s) 223, 350, 361, 511, 596, 616, 877
SsiI CCGC 1 cut(s) 709
SspI AATATT 1 cut(s) 487
SspMI CTAG 2 cut(s) 545, 792
StyD4I CCNGG 2 cut(s) 538, 752
StyI CCWWGG 1 cut(s) 150
TaaI ACNGT 2 cut(s) 262, 457
TaiI ACGT 1 cut(s) 179
TaqI TCGA 2 cut(s) 606, 784
TasI AATT 7 cut(s) 223, 350, 361, 511, 596, 616, 877
TfiI GAWTC 2 cut(s) 40, 788
Tru1I TTAA 4 cut(s) 369, 510, 689, 830
Tru9I TTAA 4 cut(s) 369, 510, 689, 830
TscAI CASTG 2 cut(s) 76, 583
TseI GCWGC 4 cut(s) 164, 680, 701, 737
TspDTI ATGAA 2 cut(s) 405, 601
TspGWI ACGGA 1 cut(s) 686
TspRI CASTG 2 cut(s) 76, 583
Van91I CCANNNNNTGG 1 cut(s) 339
Vha464I CTTAAG 1 cut(s) 829
VpaK11BI GGWCC 3 cut(s) 407, 629, 761
XagI CCTNNNNNAGG 2 cut(s) 543, 843
XapI RAATTY 2 cut(s) 350, 596
XceI RCATGY 2 cut(s) 680, 868
XcmI CCANNNNNNNNNTGG 1 cut(s) 298
XmiI GTMKAC 1 cut(s) 606
XspI CTAG 2 cut(s) 545, 792
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.