pycom14g16570

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0014291
Physical Location & Seq
Forward (+)
18776295 .. 18778334
2040 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g16570.3

Sequence Viewer

Length: 966 bp
ATGGCGCTCTCTGCAGTATTCTACGCACCTTCACAGGCGTCCCGTGCTCTTTTGGTCGGAACCCGGAAACCGAATTTCTCTCGGACTGCTTGCTTCCAGAAAACCCTAACAGTTAGGGCCTCAACCACCCTGGAAAACTACTCCAAGCTCCCTGTGGGTGAGAAATCTGTAGCCCCATCAAAGAGCAATAGTTGGCAATGGAAATTCAAGGAAAATTCTATCAACATCTACTATGAGGAGCATGAAAAGGAGAGGGAGGGTCCTTCTAAAAACATTCTTTTGATACCAACCATTTCGGATGTAAGCACTGTTGAAGAATGGAGATCAGTAGCAAGTGATCTTGTTCAGCAAGACGGTAATGTTAATTGGCGAGCAACCATTGTTGATTGGCCTGGTCTGGGGTACTCTGATAGACCAAAGATGGACTACACCGCTGATGTCATGGAGAAATTTCTGGTTGACTTCATCAATGCACCTGATGGTCCTATAAGTGGCTCAGAAAATGACTTTGTGGTATTTGGAGGAGGGCATGCAGCTACTTTAACTATTCGTGCTGTAAAACGTGGTGCTGTGAAACCTAAAGCCATTGCAGCTATTGCACCCACGTGGGCTGGTCCCCTTCCTATTGTGTTTGGTAGAGATTCTAGCATGCAAACTAGGTATGGACTGCTTCGAGGCACCTTACGAGCCCCTGCTGTGGGCTGGATGATGTATAACATGCTTGTCAGCAATGAGAAGTCAATTGAATCTCAGTACCGATCACATGTCTATTCAAATCCTGACAATGTGACTCCTGGAATTGTCGAAAGTAGATATGCGCTGACAAAGCGGAAGGGAGCTCGCTACGCACCCGCTGCCTTCTTGACTGGCCTCCTTGATCCTGTACAAACCCGAGAGGAATTTCTTGAACTCTTTGCGGATATGGGCAGAAGGAAGATACCAGTTATTGTCCTCTCAACCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_6

Protein Analysis

322

Amino Acids

35.67

Weight (kDa)

9.33

Isoelectric Point (pI)

37.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014291)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74640
fragaria_vesca FvH4_5g14981
malus_domestica MD14G1199800.v1.1
prunus_persica Prupe.5G193100_v2.0.a1
pyrus_communis pycom14g16570
rosa_chinensis RchiOBHm_Chr7g0181351
rosa_laevigata RLG00000005196
rosa_multiflora Rmu_co8287351.1_g000001 Rmu_co8345699.1_g000001 Rmu_sc0013944.1_g000001
rosa_roxburghii Rroxscaffold_3G00272110
rosa_rugosa Rorug06G0440400
rosa_samantha Rh7AG042400 Rh7BG041300 Rh7CG043700 Rh7DG042200
rosa_wichuraiana Rw7G003500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 677
AciI CCGC 4 cut(s) 432, 829, 852, 917
AclWI GGATC 1 cut(s) 872
AcsI RAATTY 5 cut(s) 73, 203, 214, 449, 899
AcvI CACGTG 1 cut(s) 606
AcyI GRCGYC 1 cut(s) 38
AfaI GTAC 3 cut(s) 404, 755, 885
AfiI CCNNNNNNNGG 4 cut(s) 398, 491, 697, 698
AflIII ACRYGT 1 cut(s) 763
AgsI TTSAA 5 cut(s) 208, 314, 746, 774, 908
AjnI CCWGG 3 cut(s) 129, 391, 793
AleI CACNNNNGTG 1 cut(s) 604
AluBI AGCT 4 cut(s) 148, 536, 593, 839
AluI AGCT 4 cut(s) 148, 536, 593, 839
Alw21I GWGCWC 2 cut(s) 49, 841
AlwI GGATC 1 cut(s) 872
Ama87I CYCGRG 1 cut(s) 891
AoxI GGCC 3 cut(s) 117, 389, 868
ApeKI GCWGC 3 cut(s) 533, 590, 854
ApoI RAATTY 5 cut(s) 73, 203, 214, 449, 899
AspLEI GCGC 2 cut(s) 7, 820
AspS9I GGNCC 4 cut(s) 117, 260, 482, 614
AsuC2I CCSGG 1 cut(s) 64
AsuHPI GGTGA 1 cut(s) 170
AvaI CYCGRG 1 cut(s) 891
AvaII GGWCC 3 cut(s) 260, 482, 614
BanI GGYRCC 1 cut(s) 677
BanII GRGCYC 2 cut(s) 691, 841
BbrPI CACGTG 1 cut(s) 606
Bbv12I GWGCWC 2 cut(s) 49, 841
BbvI GCAGC 3 cut(s) 545, 602, 841
BccI CCATC 3 cut(s) 184, 415, 473
BciT130I CCWGG 3 cut(s) 131, 393, 795
BcnI CCSGG 1 cut(s) 64
BfaI CTAG 2 cut(s) 645, 657
BfmI CTRYAG 2 cut(s) 12, 168
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 3 cut(s) 534, 591, 855
BlsI GCNGC 3 cut(s) 535, 592, 856
Bme1390I CCNGG 4 cut(s) 64, 131, 393, 795
Bme18I GGWCC 3 cut(s) 260, 482, 614
BmeT110I CYCGRG 1 cut(s) 891
BmgT120I GGNCC 4 cut(s) 117, 260, 482, 614
BmiI GGNNCC 4 cut(s) 61, 261, 616, 679
BmrFI CCNGG 4 cut(s) 64, 131, 393, 795
BpuMI CCSGG 1 cut(s) 64
BsaAI YACGTR 1 cut(s) 606
BsaHI GRCGYC 1 cut(s) 38
BsaJI CCNNGG 1 cut(s) 129
Bsc4I CCNNNNNNNGG 4 cut(s) 398, 491, 697, 698
Bse1I ACTGG 2 cut(s) 871, 941
Bse3DI GCAATG 3 cut(s) 203, 585, 736
BseBI CCWGG 3 cut(s) 131, 393, 795
BseDI CCNNGG 1 cut(s) 129
BseGI GGATG 2 cut(s) 304, 711
BseLI CCNNNNNNNGG 4 cut(s) 398, 491, 697, 698
BseMI GCAATG 3 cut(s) 203, 585, 736
BseMII CTCAG 2 cut(s) 510, 764
BseNI ACTGG 2 cut(s) 871, 941
BseRI GAGGAG 2 cut(s) 251, 537
BseXI GCAGC 3 cut(s) 545, 602, 841
BshFI GGCC 3 cut(s) 119, 391, 870
BshNI GGYRCC 1 cut(s) 677
BsiHKAI GWGCWC 2 cut(s) 49, 841
BsiHKCI CYCGRG 1 cut(s) 891
BsiSI CCGG 1 cut(s) 64
BslFI GGGAC 2 cut(s) 25, 600
BslI CCNNNNNNNGG 4 cut(s) 398, 491, 697, 698
BsmFI GGGAC 2 cut(s) 25, 600
BsnI GGCC 3 cut(s) 119, 391, 870
BsoBI CYCGRG 1 cut(s) 891
Bsp1286I GDGCHC 3 cut(s) 49, 691, 841
Bsp1407I TGTACA 1 cut(s) 883
Bsp143I GATC 4 cut(s) 323, 337, 758, 877
BspACI CCGC 4 cut(s) 432, 829, 852, 917
BspANI GGCC 3 cut(s) 119, 391, 870
BspCNI CTCAG 2 cut(s) 509, 763
BspLI GGNNCC 4 cut(s) 61, 261, 616, 679
BspMAI CTGCAG 1 cut(s) 16
BspPI GGATC 1 cut(s) 872
BspT107I GGYRCC 1 cut(s) 677
BsrDI GCAATG 3 cut(s) 203, 585, 736
BsrGI TGTACA 1 cut(s) 883
BsrI ACTGG 2 cut(s) 871, 941
BssECI CCNNGG 1 cut(s) 129
BssMI GATC 4 cut(s) 323, 337, 758, 877
BssNI GRCGYC 1 cut(s) 38
Bst2UI CCWGG 3 cut(s) 131, 393, 795
Bst4CI ACNGT 3 cut(s) 112, 310, 356
BstACI GRCGYC 1 cut(s) 38
BstAPI GCANNNNNTGC 2 cut(s) 596, 854
BstAUI TGTACA 1 cut(s) 883
BstBAI YACGTR 1 cut(s) 606
BstC8I GCNNGC 5 cut(s) 91, 372, 531, 650, 841
BstDEI CTNAG 2 cut(s) 496, 750
BstF5I GGATG 2 cut(s) 304, 711
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 820
BstKTI GATC 4 cut(s) 326, 340, 761, 880
BstMBI GATC 4 cut(s) 323, 337, 758, 877
BstMWI GCNNNNNNNGC 7 cut(s) 11, 44, 590, 596, 826, 845, 854
BstNI CCWGG 3 cut(s) 131, 393, 795
BstNSI RCATGY 4 cut(s) 533, 652, 721, 767
BstSCI CCNGG 4 cut(s) 62, 129, 391, 793
BstSFI CTRYAG 2 cut(s) 12, 168
BstV1I GCAGC 3 cut(s) 545, 602, 841
BsuRI GGCC 3 cut(s) 119, 391, 870
BtsCI GGATG 2 cut(s) 304, 711
BtsIMutI CAGTG 1 cut(s) 306
Cac8I GCNNGC 5 cut(s) 91, 372, 531, 650, 841
CfoI GCGC 2 cut(s) 7, 820
Cfr13I GGNCC 4 cut(s) 117, 260, 482, 614
CseI GACGC 1 cut(s) 27
Csp6I GTAC 3 cut(s) 403, 754, 884
CviAII CATG 6 cut(s) 242, 442, 530, 649, 718, 764
CviQI GTAC 3 cut(s) 403, 754, 884
DdeI CTNAG 2 cut(s) 496, 750
DpnI GATC 4 cut(s) 325, 339, 760, 879
DpnII GATC 4 cut(s) 323, 337, 758, 877
Ecl136II GAGCTC 1 cut(s) 839
Eco24I GRGCYC 2 cut(s) 691, 841
Eco47I GGWCC 3 cut(s) 260, 482, 614
Eco53kI GAGCTC 1 cut(s) 839
Eco72I CACGTG 1 cut(s) 606
Eco88I CYCGRG 1 cut(s) 891
EcoICRI GAGCTC 1 cut(s) 839
EcoO109I RGGNCCY 2 cut(s) 117, 260
EcoRII CCWGG 3 cut(s) 129, 391, 793
EcoT38I GRGCYC 2 cut(s) 691, 841
FaeI CATG 6 cut(s) 245, 445, 533, 652, 721, 767
FaqI GGGAC 2 cut(s) 25, 600
FatI CATG 6 cut(s) 241, 441, 529, 648, 717, 763
FauI CCCGC 1 cut(s) 859
Fnu4HI GCNGC 3 cut(s) 534, 591, 855
FokI GGATG 2 cut(s) 311, 718
FriOI GRGCYC 2 cut(s) 691, 841
Fsp4HI GCNGC 3 cut(s) 534, 591, 855
FspBI CTAG 2 cut(s) 645, 657
GlaI GCGC 2 cut(s) 6, 819
GluI GCNGC 3 cut(s) 534, 591, 855
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 3 cut(s) 119, 391, 870
HapII CCGG 1 cut(s) 64
HgaI GACGC 1 cut(s) 27
HhaI GCGC 2 cut(s) 7, 820
Hin1I GRCGYC 1 cut(s) 38
Hin1II CATG 6 cut(s) 245, 445, 533, 652, 721, 767
Hin6I GCGC 2 cut(s) 5, 818
HinP1I GCGC 2 cut(s) 5, 818
HincII GTYRAC 1 cut(s) 460
HindII GTYRAC 1 cut(s) 460
HinfI GANTC 3 cut(s) 641, 746, 790
HpaII CCGG 1 cut(s) 64
HphI GGTGA 1 cut(s) 170
Hpy166II GTNNAC 1 cut(s) 460
Hpy188I TCNGA 6 cut(s) 59, 84, 298, 409, 499, 965
Hpy188III TCNNGA 4 cut(s) 97, 779, 862, 905
Hpy8I GTNNAC 1 cut(s) 460
HpyAV CCTTC 6 cut(s) 39, 273, 629, 826, 868, 924
HpyCH4III ACNGT 3 cut(s) 112, 310, 356
HpyCH4IV ACGT 2 cut(s) 562, 605
HpyCH4V TGCA 6 cut(s) 14, 473, 533, 590, 599, 652
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 44, 590, 596, 826, 845, 854
HpyF3I CTNAG 2 cut(s) 496, 750
HpySE526I ACGT 2 cut(s) 562, 605
Hsp92I GRCGYC 1 cut(s) 38
Hsp92II CATG 6 cut(s) 245, 445, 533, 652, 721, 767
HspAI GCGC 2 cut(s) 5, 818
Kzo9I GATC 4 cut(s) 323, 337, 758, 877
LmnI GCTCC 3 cut(s) 153, 238, 836
Lsp1109I GCAGC 3 cut(s) 545, 602, 841
MaeI CTAG 2 cut(s) 645, 657
MaeII ACGT 2 cut(s) 562, 605
MaeIII GTNAC 1 cut(s) 787
MalI GATC 4 cut(s) 325, 339, 760, 879
MboI GATC 4 cut(s) 323, 337, 758, 877
MboII GAAGA 2 cut(s) 326, 946
MfeI CAATTG 1 cut(s) 741
MhlI GDGCHC 3 cut(s) 49, 691, 841
MluCI AATT 8 cut(s) 73, 203, 214, 364, 449, 741, 798, 899
MlyI GAGTC 1 cut(s) 784
MmeI TCCRAC 1 cut(s) 37
MseI TTAA 2 cut(s) 363, 542
MslI CAYNNNNRTG 1 cut(s) 604
MspA1I CMGCKG 2 cut(s) 434, 854
MspI CCGG 1 cut(s) 64
MspR9I CCNGG 4 cut(s) 64, 131, 393, 795
MunI CAATTG 1 cut(s) 741
MvaI CCWGG 3 cut(s) 131, 393, 795
MwoI GCNNNNNNNGC 7 cut(s) 11, 44, 590, 596, 826, 845, 854
NciI CCSGG 1 cut(s) 64
NdeII GATC 4 cut(s) 323, 337, 758, 877
NlaIII CATG 6 cut(s) 245, 445, 533, 652, 721, 767
NlaIV GGNNCC 4 cut(s) 61, 261, 616, 679
NmuCI GTSAC 1 cut(s) 787
NspI RCATGY 4 cut(s) 533, 652, 721, 767
OliI CACNNNNGTG 1 cut(s) 604
PaeI GCATGC 2 cut(s) 533, 652
PciI ACATGT 1 cut(s) 763
PfeI GAWTC 2 cut(s) 641, 746
PfoI TCCNGGA 1 cut(s) 793
PkrI GCNGC 3 cut(s) 535, 592, 856
PleI GAGTC 1 cut(s) 784
PmaCI CACGTG 1 cut(s) 606
PmlI CACGTG 1 cut(s) 606
PpsI GAGTC 1 cut(s) 784
Ppu21I YACGTR 1 cut(s) 606
PpuMI RGGWCCY 1 cut(s) 260
PscI ACATGT 1 cut(s) 763
Psp124BI GAGCTC 1 cut(s) 841
Psp5II RGGWCCY 1 cut(s) 260
Psp6I CCWGG 3 cut(s) 129, 391, 793
PspCI CACGTG 1 cut(s) 606
PspGI CCWGG 3 cut(s) 129, 391, 793
PspN4I GGNNCC 4 cut(s) 61, 261, 616, 679
PspPI GGNCC 4 cut(s) 117, 260, 482, 614
PspPPI RGGWCCY 1 cut(s) 260
PstI CTGCAG 1 cut(s) 16
RsaI GTAC 3 cut(s) 404, 755, 885
RsaNI GTAC 3 cut(s) 403, 754, 884
RseI CAYNNNNRTG 1 cut(s) 604
SacI GAGCTC 1 cut(s) 841
SaqAI TTAA 2 cut(s) 363, 542
SatI GCNGC 3 cut(s) 534, 591, 855
Sau3AI GATC 4 cut(s) 323, 337, 758, 877
Sau96I GGNCC 4 cut(s) 117, 260, 482, 614
SchI GAGTC 1 cut(s) 784
ScrFI CCNGG 4 cut(s) 64, 131, 393, 795
SduI GDGCHC 3 cut(s) 49, 691, 841
SfcI CTRYAG 2 cut(s) 12, 168
SinI GGWCC 3 cut(s) 260, 482, 614
SmiMI CAYNNNNRTG 1 cut(s) 604
SphI GCATGC 2 cut(s) 533, 652
Sse9I AATT 8 cut(s) 73, 203, 214, 364, 449, 741, 798, 899
SsiI CCGC 4 cut(s) 432, 829, 852, 917
SspMI CTAG 2 cut(s) 645, 657
SstI GAGCTC 1 cut(s) 841
StyD4I CCNGG 4 cut(s) 62, 129, 391, 793
TaaI ACNGT 3 cut(s) 112, 310, 356
TaiI ACGT 2 cut(s) 565, 608
TaqI TCGA 2 cut(s) 673, 804
TasI AATT 8 cut(s) 73, 203, 214, 364, 449, 741, 798, 899
TatI WGTACW 1 cut(s) 883
TfiI GAWTC 2 cut(s) 641, 746
Tru1I TTAA 2 cut(s) 363, 542
Tru9I TTAA 2 cut(s) 363, 542
TscAI CASTG 1 cut(s) 313
TseFI GTSAC 1 cut(s) 787
TseI GCWGC 3 cut(s) 533, 590, 854
Tsp45I GTSAC 1 cut(s) 787
TspDTI ATGAA 2 cut(s) 258, 454
TspRI CASTG 1 cut(s) 313
VpaK11BI GGWCC 3 cut(s) 260, 482, 614
XapI RAATTY 5 cut(s) 73, 203, 214, 449, 899
XceI RCATGY 4 cut(s) 533, 652, 721, 767
XcmI CCANNNNNNNNNTGG 1 cut(s) 151
XspI CTAG 2 cut(s) 645, 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.