Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0010325

Physical Location & Seq

Genomic Coordinates Reverse (-)

8715121 .. 8718235

Gene Structure 3115 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g15380.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGCCGGAAGCAGAAGCATAGGCTCAGAGCCAATCCAAGATTCCCCAGACCCAAATTCCAAGAAAGCCAGGGGTTTAACCATTGAAGGGTACCCAGTTGAGGGTTTATCAATTGGAGGCCAAGAAACCTGTGTCATCTTTCCGTCTCTCAAATTGTCATTTGATATTGGACGATGCCCACAACGCGCAATTGCCCAAGACTTCCTCTTCATCTCACATGCCCACATGGATCACATTGGAGGACTGCCAATGTATGTTGCAACTCGTGGGTTATACCGCATGAAGCCCCCAACGATCATTGTACCAAAGTGTATTAAAGAAGTGGTTGAAGAACTCTTTGAGGTGCACAGAAAAATGGACCAATCGGAGCTGAAGCATAATTTGATTGGCTTGGATGCTGGAGAAGAATTCCATATAAGAAAGGATCTCAAAGTAAAAGCTTTTAGGACTTATCATAGAATACCAAGTCAGGGTTATGTAGTATACTCGGTAAAACATAAACTTAAGCAGGAGTATGTTGGCCTATGTGGGACTGAAATTAAGAAAATGAAAGAATCAGGTGTGGAGATTACAAACATTTTGATAGAACCTCAAGTTGCTTTCACAGGAGATACCACGGCTGATTTCATAGTTGACAATAGCAATATTGATGTGCTGAGGGCAAAGATACTTGTCATGGAGAGCACCTTCCTAGATGAGTCAATTACAGTGGAGCATGCAAGGGATTATGGACATGTTCATCTGTCTGAGATAATTAATCACGCAGAAAGATTTGAAAACAAAGCAATTCTTCTTATTCACTTTTCAGCTCGATACACTGTAAACGAAATTCAACAAGCTGTAGCGGCGTTGCCTCCTCCCTTAGCAGGGCGAGTTTTTGCACTTACAGAAGGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0031123 GO:0034414 GO:0034470 GO:0034641 GO:0034660 GO:0042779 GO:0042780 GO:0042781 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043628 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901360 GO:1905267

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Lactamase_B_2

Protein Analysis

300

Amino Acids

33.47

Weight (kDa)

6.36

Isoelectric Point (pI)

47.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lactamase_B_2	PF12706	67 - 260	9e-10	Beta-lactamase superfamily domain
Anti-Pycsar_Apyc1	PF23023	67 - 165	5e-08	Anti-Pycsar protein Apyc1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74700
fragaria_vesca	FvH4_5g15380 FvH4_5g15380 FvH4_5g15380 FvH4_5g15380
malus_domestica	MD06G1188900.v1.1
prunus_persica	Prupe.5G187500_v2.0.a1
pyrus_communis	pycom06g16770
rosa_chinensis	RchiOBHm_Chr7g0180691
rosa_laevigata	RLG00000005240
rosa_multiflora	Rmu_sc0007457.1_g000026 Rmu_sc0023372.1_g000013
rosa_roxburghii	Rroxscaffold_3G00272650
rosa_rugosa	Rorug06G0434900 Rorug06G0434900 Rorug06G0434900
rosa_samantha	Rh7AG036600 Rh7BG036400 Rh7CG038100 Rh7DG036600
rosa_wichuraiana	Rw7G003020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	90
AccB1I	GGYRCC	1 cut(s)	90
AccI	GTMKAC	1 cut(s)	483
AccII	CGCG	1 cut(s)	186
AciI	CCGC	2 cut(s)	277, 845
AclWI	GGATC	2 cut(s)	237, 432
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	55, 407, 828
AcuI	CTGAAG	1 cut(s)	392
AfaI	GTAC	2 cut(s)	92, 303
AfiI	CCNNNNNNNGG	6 cut(s)	87, 100, 101, 470, 866, 867
AflII	CTTAAG	1 cut(s)	503
AflIII	ACRYGT	1 cut(s)	733
AgsI	TTSAA	4 cut(s)	86, 329, 776, 833
AjnI	CCWGG	1 cut(s)	68
AjuI	GAANNNNNNNTTGG	2 cut(s)	25, 57
AluBI	AGCT	4 cut(s)	370, 440, 809, 839
AluI	AGCT	4 cut(s)	370, 440, 809, 839
Alw21I	GWGCWC	2 cut(s)	348, 686
Alw26I	GTCTC	1 cut(s)	150
Alw44I	GTGCAC	1 cut(s)	344
AlwI	GGATC	2 cut(s)	237, 432
AoxI	GGCC	3 cut(s)	3, 118, 520
ApaLI	GTGCAC	1 cut(s)	344
ApoI	RAATTY	3 cut(s)	55, 407, 828
AseI	ATTAAT	1 cut(s)	756
Asp718I	GGTACC	1 cut(s)	90
AspLEI	GCGC	1 cut(s)	188
AspS9I	GGNCC	1 cut(s)	358
AvaII	GGWCC	1 cut(s)	358
BaeGI	GKGCMC	1 cut(s)	348
BanI	GGYRCC	1 cut(s)	90
BauI	CACGAG	1 cut(s)	264
Bbv12I	GWGCWC	2 cut(s)	348, 686
BbvCI	CCTCAGC	1 cut(s)	656
BceAI	ACGGC	1 cut(s)	633
BciT130I	CCWGG	1 cut(s)	70
BcoDI	GTCTC	1 cut(s)	150
BfaI	CTAG	1 cut(s)	692
BfmI	CTRYAG	1 cut(s)	840
BfrI	CTTAAG	1 cut(s)	503
BisI	GCNGC	1 cut(s)	846
BlsI	GCNGC	1 cut(s)	847
Bme1390I	CCNGG	1 cut(s)	70
Bme18I	GGWCC	1 cut(s)	358
BmgT120I	GGNCC	1 cut(s)	358
BmiI	GGNNCC	1 cut(s)	92
BmrFI	CCNGG	1 cut(s)	70
BmrI	ACTGGG	1 cut(s)	89
BmsI	GCATC	2 cut(s)	164, 385
BmuI	ACTGGG	1 cut(s)	89
BpmI	CTGGAG	1 cut(s)	420
Bpu10I	CCTNAGC	2 cut(s)	656, 862
BpuEI	CTTGAG	1 cut(s)	576
BsaJI	CCNNGG	2 cut(s)	69, 615
Bsc4I	CCNNNNNNNGG	6 cut(s)	87, 100, 101, 470, 866, 867
Bse1I	ACTGG	1 cut(s)	95
BseBI	CCWGG	1 cut(s)	70
BseDI	CCNNGG	2 cut(s)	69, 615
BseGI	GGATG	1 cut(s)	400
BseLI	CCNNNNNNNGG	6 cut(s)	87, 100, 101, 470, 866, 867
BseMII	CTCAG	3 cut(s)	39, 647, 738
BseNI	ACTGG	1 cut(s)	95
BseRI	GAGGAG	1 cut(s)	846
BseSI	GKGCMC	1 cut(s)	348
Bsh1236I	CGCG	1 cut(s)	186
BshFI	GGCC	3 cut(s)	5, 120, 522
BshNI	GGYRCC	1 cut(s)	90
BsiHKAI	GWGCWC	2 cut(s)	348, 686
BsiSI	CCGG	1 cut(s)	6
BslFI	GGGAC	1 cut(s)	544
BslI	CCNNNNNNNGG	6 cut(s)	87, 100, 101, 470, 866, 867
BsmAI	GTCTC	1 cut(s)	150
BsmBI	CGTCTC	1 cut(s)	150
BsmFI	GGGAC	1 cut(s)	544
BsnI	GGCC	3 cut(s)	5, 120, 522
Bsp1286I	GDGCHC	2 cut(s)	348, 686
Bsp143I	GATC	3 cut(s)	229, 294, 424
BspACI	CCGC	2 cut(s)	277, 845
BspANI	GGCC	3 cut(s)	5, 120, 522
BspCNI	CTCAG	3 cut(s)	38, 648, 739
BspFNI	CGCG	1 cut(s)	186
BspLI	GGNNCC	1 cut(s)	92
BspPI	GGATC	2 cut(s)	237, 432
BspT107I	GGYRCC	1 cut(s)	90
BspTI	CTTAAG	1 cut(s)	503
BsrI	ACTGG	1 cut(s)	95
BssECI	CCNNGG	2 cut(s)	69, 615
BssMI	GATC	3 cut(s)	229, 294, 424
BssNAI	GTATAC	1 cut(s)	484
BssSI	CACGAG	1 cut(s)	264
Bst1107I	GTATAC	1 cut(s)	484
Bst2BI	CACGAG	1 cut(s)	264
Bst2UI	CCWGG	1 cut(s)	70
Bst4CI	ACNGT	2 cut(s)	709, 820
Bst6I	CTCTTC	1 cut(s)	212
BstAFI	CTTAAG	1 cut(s)	503
BstC8I	GCNNGC	1 cut(s)	717
BstDEI	CTNAG	4 cut(s)	25, 656, 747, 862
BstDSI	CCRYGG	1 cut(s)	615
BstF5I	GGATG	1 cut(s)	400
BstFNI	CGCG	1 cut(s)	186
BstHHI	GCGC	1 cut(s)	188
BstKTI	GATC	3 cut(s)	232, 297, 427
BstMAI	GTCTC	1 cut(s)	150
BstMBI	GATC	3 cut(s)	229, 294, 424
BstMWI	GCNNNNNNNGC	2 cut(s)	183, 845
BstNI	CCWGG	1 cut(s)	70
BstNSI	RCATGY	3 cut(s)	221, 719, 737
BstSCI	CCNGG	1 cut(s)	68
BstSFI	CTRYAG	1 cut(s)	840
BstSLI	GKGCMC	1 cut(s)	348
BstUI	CGCG	1 cut(s)	186
BstX2I	RGATCY	1 cut(s)	424
BstYI	RGATCY	1 cut(s)	424
BstZ17I	GTATAC	1 cut(s)	484
BsuRI	GGCC	3 cut(s)	5, 120, 522
BtgI	CCRYGG	1 cut(s)	615
BtsCI	GGATG	1 cut(s)	400
BtsIMutI	CAGTG	2 cut(s)	714, 816
Cac8I	GCNNGC	1 cut(s)	717
CfoI	GCGC	1 cut(s)	188
Cfr13I	GGNCC	1 cut(s)	358
Csp6I	GTAC	2 cut(s)	91, 302
CspCI	CAANNNNNGTGG	2 cut(s)	690, 725
CviAII	CATG	6 cut(s)	218, 226, 280, 676, 716, 734
CviQI	GTAC	2 cut(s)	91, 302
DdeI	CTNAG	4 cut(s)	25, 656, 747, 862
DpnI	GATC	3 cut(s)	231, 296, 426
DpnII	GATC	3 cut(s)	229, 294, 424
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	212
EarI	CTCTTC	1 cut(s)	212
Eco47I	GGWCC	1 cut(s)	358
Eco57I	CTGAAG	1 cut(s)	392
EcoRI	GAATTC	1 cut(s)	407
EcoRII	CCWGG	1 cut(s)	68
Esp3I	CGTCTC	1 cut(s)	150
FaeI	CATG	6 cut(s)	221, 229, 283, 679, 719, 737
FalI	AAGNNNNNCTT	2 cut(s)	774, 806
FaqI	GGGAC	1 cut(s)	544
FatI	CATG	6 cut(s)	217, 225, 279, 675, 715, 733
FblI	GTMKAC	1 cut(s)	483
Fnu4HI	GCNGC	1 cut(s)	846
FokI	GGATG	1 cut(s)	407
Fsp4HI	GCNGC	1 cut(s)	846
FspBI	CTAG	1 cut(s)	692
GlaI	GCGC	1 cut(s)	187
GluI	GCNGC	1 cut(s)	846
GsuI	CTGGAG	1 cut(s)	420
HaeIII	GGCC	3 cut(s)	5, 120, 522
HapII	CCGG	1 cut(s)	6
HhaI	GCGC	1 cut(s)	188
Hin1II	CATG	6 cut(s)	221, 229, 283, 679, 719, 737
Hin6I	GCGC	1 cut(s)	186
HinP1I	GCGC	1 cut(s)	186
HincII	GTYRAC	1 cut(s)	634
HindII	GTYRAC	1 cut(s)	634
HindIII	AAGCTT	1 cut(s)	438
HinfI	GANTC	3 cut(s)	41, 554, 698
HpaII	CCGG	1 cut(s)	6
Hpy166II	GTNNAC	4 cut(s)	346, 484, 634, 823
Hpy188I	TCNGA	3 cut(s)	28, 367, 748
Hpy8I	GTNNAC	4 cut(s)	346, 484, 634, 823
HpyAV	CCTTC	3 cut(s)	80, 697, 884
HpyCH4III	ACNGT	2 cut(s)	709, 820
HpyCH4V	TGCA	4 cut(s)	260, 346, 719, 881
HpyF10VI	GCNNNNNNNGC	2 cut(s)	183, 845
HpyF3I	CTNAG	4 cut(s)	25, 656, 747, 862
Hsp92II	CATG	6 cut(s)	221, 229, 283, 679, 719, 737
HspAI	GCGC	1 cut(s)	186
KpnI	GGTACC	1 cut(s)	94
Kzo9I	GATC	3 cut(s)	229, 294, 424
LmnI	GCTCC	2 cut(s)	367, 712
LweI	GCATC	2 cut(s)	164, 385
MaeI	CTAG	1 cut(s)	692
MalI	GATC	3 cut(s)	231, 296, 426
MboI	GATC	3 cut(s)	229, 294, 424
MboII	GAAGA	4 cut(s)	199, 341, 416, 782
MfeI	CAATTG	2 cut(s)	111, 189
MflI	RGATCY	1 cut(s)	424
MhlI	GDGCHC	2 cut(s)	348, 686
MlyI	GAGTC	1 cut(s)	707
MnlI	CCTC	9 cut(s)	94, 110, 215, 233, 334, 600, 651, 864, 867
MseI	TTAA	5 cut(s)	77, 315, 504, 540, 756
MspCI	CTTAAG	1 cut(s)	503
MspI	CCGG	1 cut(s)	6
MspR9I	CCNGG	1 cut(s)	70
MunI	CAATTG	2 cut(s)	111, 189
MvaI	CCWGG	1 cut(s)	70
MvnI	CGCG	1 cut(s)	186
MwoI	GCNNNNNNNGC	2 cut(s)	183, 845
NdeII	GATC	3 cut(s)	229, 294, 424
NlaIII	CATG	6 cut(s)	221, 229, 283, 679, 719, 737
NlaIV	GGNNCC	1 cut(s)	92
NspI	RCATGY	3 cut(s)	221, 719, 737
PaeI	GCATGC	1 cut(s)	719
PciI	ACATGT	1 cut(s)	733
PfeI	GAWTC	2 cut(s)	41, 554
PkrI	GCNGC	1 cut(s)	847
PleI	GAGTC	1 cut(s)	706
PpsI	GAGTC	1 cut(s)	706
PscI	ACATGT	1 cut(s)	733
PshBI	ATTAAT	1 cut(s)	756
Psp6I	CCWGG	1 cut(s)	68
PspGI	CCWGG	1 cut(s)	68
PspN4I	GGNNCC	1 cut(s)	92
PspPI	GGNCC	1 cut(s)	358
PsuI	RGATCY	1 cut(s)	424
RsaI	GTAC	2 cut(s)	92, 303
RsaNI	GTAC	2 cut(s)	91, 302
SaqAI	TTAA	5 cut(s)	77, 315, 504, 540, 756
SatI	GCNGC	1 cut(s)	846
Sau3AI	GATC	3 cut(s)	229, 294, 424
Sau96I	GGNCC	1 cut(s)	358
SchI	GAGTC	1 cut(s)	707
ScrFI	CCNGG	1 cut(s)	70
SduI	GDGCHC	2 cut(s)	348, 686
SfaNI	GCATC	2 cut(s)	164, 385
SfcI	CTRYAG	1 cut(s)	840
SinI	GGWCC	1 cut(s)	358
SmlI	CTYRAG	2 cut(s)	503, 591
SmoI	CTYRAG	2 cut(s)	503, 591
SphI	GCATGC	1 cut(s)	719
SsiI	CCGC	2 cut(s)	277, 845
SspI	AATATT	1 cut(s)	646
SspMI	CTAG	1 cut(s)	692
StyD4I	CCNGG	1 cut(s)	68
TaaI	ACNGT	2 cut(s)	709, 820
TaqI	TCGA	1 cut(s)	811
TauI	GCSGC	1 cut(s)	848
TfiI	GAWTC	2 cut(s)	41, 554
Tru1I	TTAA	5 cut(s)	77, 315, 504, 540, 756
Tru9I	TTAA	5 cut(s)	77, 315, 504, 540, 756
TscAI	CASTG	2 cut(s)	714, 823
TspDTI	ATGAA	5 cut(s)	199, 296, 563, 616, 728
TspGWI	ACGGA	1 cut(s)	132
TspRI	CASTG	2 cut(s)	714, 823
Vha464I	CTTAAG	1 cut(s)	503
VneI	GTGCAC	1 cut(s)	344
VpaK11BI	GGWCC	1 cut(s)	358
VspI	ATTAAT	1 cut(s)	756
XapI	RAATTY	3 cut(s)	55, 407, 828
XceI	RCATGY	3 cut(s)	221, 719, 737
XmiI	GTMKAC	1 cut(s)	483
XspI	CTAG	1 cut(s)	692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.