Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0010325

Physical Location & Seq

Genomic Coordinates Forward (+)

2690773 .. 2693562

Gene Structure 2790 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG036600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGCCGGAAGTAGAAGCCTAGGCTCTGAGCCAATCCAAGATTCCTCAGACTCTAATTCAAAGAAAGCCAGGGGTTTAACCATTGAAGGGTACCCAGTTGAGGGTTTATCAATTGGAGGCCACGAAACCTGTGTAATCTTTCCATCTCTCAAGTTGTCATTTGATATTGGACGATGCCCACAACGTGCTATTGCCCAAGACTTCCTCTTCATCTCACATGCCCACATGGATCACATTGGAGGACTGCCTATGTATGTTGCAACTCGTGGGCTATACAGCATGAAGCCCCCAACGATCATTGTACCAAAATGTATAAAAGAAGTTGTTGAAGAACTCTTTGAGGTGCACAGAAAAATGGATCAATCGGAGCTGAAGCATAATCTGATTGGCTTGGATGCTGGGGAAGAATTCCATATGAGAAAGGATCTCAAAGTAAAAGCTTTTAGGACTTATCATAGAATACCAAGTCAGGGTTACGTAGTCTATTCGGTAAAACATAAACTTAAGCAGGAGTATCTCGGGCTATCTGGGACTGAAATTAAAGAGTTGAAATTATCAGGCGTGCAGATTACAGACACTTTGATAGAACCTCAAGTTGCTTTCACAGGAGATACCACATCTGATTTCATAGTTGACAGTAGTAATATTGATGTGCTGAGAGCAAAGATTCTTGTCATGGAGAGTACCTTCCTAGATGAGTCAATTACAGTGGAGCATGCAAGAGACTATGGACACATTCATCTATCTGAGGTTCAATCTCCAAACTCTTTAGATTCTCTAGTGCTCACATTGGTGTCTGATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0031123 GO:0034414 GO:0034470 GO:0034641 GO:0034660 GO:0042779 GO:0042780 GO:0042781 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043628 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901360 GO:1905267

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Lactamase_B_2

Protein Analysis

268

Amino Acids

29.81

Weight (kDa)

5.83

Isoelectric Point (pI)

46.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lactamase_B_2	PF12706	67 - 246	2.4e-08	Beta-lactamase superfamily domain
Anti-Pycsar_Apyc1	PF23023	67 - 160	6e-08	Anti-Pycsar protein Apyc1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74700
fragaria_vesca	FvH4_5g15380 FvH4_5g15380 FvH4_5g15380 FvH4_5g15380
malus_domestica	MD06G1188900.v1.1
prunus_persica	Prupe.5G187500_v2.0.a1
pyrus_communis	pycom06g16770
rosa_chinensis	RchiOBHm_Chr7g0180691
rosa_laevigata	RLG00000005240
rosa_multiflora	Rmu_sc0007457.1_g000026 Rmu_sc0023372.1_g000013
rosa_roxburghii	Rroxscaffold_3G00272650
rosa_rugosa	Rorug06G0434900 Rorug06G0434900 Rorug06G0434900
rosa_samantha	Rh7AG036600 Rh7BG036400 Rh7CG038100 Rh7DG036600
rosa_wichuraiana	Rw7G003020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	90
AccB1I	GGYRCC	1 cut(s)	90
AclWI	GGATC	3 cut(s)	237, 366, 432
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	407
AcuI	CTGAAG	1 cut(s)	392
AdeI	CACNNNGTG	1 cut(s)	185
AfaI	GTAC	3 cut(s)	92, 303, 685
AfiI	CCNNNNNNNGG	4 cut(s)	87, 100, 101, 470
AflII	CTTAAG	1 cut(s)	503
AgsI	TTSAA	5 cut(s)	60, 86, 329, 550, 755
AjnI	CCWGG	1 cut(s)	68
AjuI	GAANNNNNNNTTGG	2 cut(s)	25, 57
AleI	CACNNNNGTG	1 cut(s)	791
AluBI	AGCT	2 cut(s)	370, 440
AluI	AGCT	2 cut(s)	370, 440
Alw21I	GWGCWC	2 cut(s)	348, 786
Alw26I	GTCTC	1 cut(s)	717
Alw44I	GTGCAC	1 cut(s)	344
AlwI	GGATC	3 cut(s)	237, 366, 432
Ama87I	CYCGRG	1 cut(s)	518
AoxI	GGCC	2 cut(s)	3, 118
ApaLI	GTGCAC	1 cut(s)	344
ApoI	RAATTY	1 cut(s)	407
Asp718I	GGTACC	1 cut(s)	90
AspA2I	CCTAGG	1 cut(s)	19
AvaI	CYCGRG	1 cut(s)	518
AvrII	CCTAGG	1 cut(s)	19
BaeGI	GKGCMC	1 cut(s)	348
BanI	GGYRCC	1 cut(s)	90
BauI	CACGAG	1 cut(s)	264
Bbv12I	GWGCWC	2 cut(s)	348, 786
BccI	CCATC	1 cut(s)	151
BciT130I	CCWGG	1 cut(s)	70
BcoDI	GTCTC	1 cut(s)	717
BfaI	CTAG	3 cut(s)	20, 692, 779
BfrI	CTTAAG	1 cut(s)	503
BlnI	CCTAGG	1 cut(s)	19
Bme1390I	CCNGG	1 cut(s)	70
BmeT110I	CYCGRG	1 cut(s)	518
BmiI	GGNNCC	1 cut(s)	92
BmrFI	CCNGG	1 cut(s)	70
BmrI	ACTGGG	1 cut(s)	89
BmsI	GCATC	2 cut(s)	164, 385
BmuI	ACTGGG	1 cut(s)	89
BpuEI	CTTGAG	2 cut(s)	134, 576
BsaAI	YACGTR	1 cut(s)	478
BsaJI	CCNNGG	2 cut(s)	19, 69
Bsc4I	CCNNNNNNNGG	4 cut(s)	87, 100, 101, 470
Bse1I	ACTGG	1 cut(s)	95
BseBI	CCWGG	1 cut(s)	70
BseDI	CCNNGG	2 cut(s)	19, 69
BseGI	GGATG	1 cut(s)	400
BseLI	CCNNNNNNNGG	4 cut(s)	87, 100, 101, 470
BseMII	CTCAG	4 cut(s)	18, 60, 647, 738
BseNI	ACTGG	1 cut(s)	95
BseSI	GKGCMC	1 cut(s)	348
BseYI	CCCAGC	1 cut(s)	398
BsgI	GTGCAG	1 cut(s)	584
BshFI	GGCC	2 cut(s)	5, 120
BshNI	GGYRCC	1 cut(s)	90
BsiHKAI	GWGCWC	2 cut(s)	348, 786
BsiHKCI	CYCGRG	1 cut(s)	518
BsiSI	CCGG	1 cut(s)	6
BslFI	GGGAC	1 cut(s)	544
BslI	CCNNNNNNNGG	4 cut(s)	87, 100, 101, 470
BsmAI	GTCTC	1 cut(s)	717
BsmFI	GGGAC	1 cut(s)	544
BsnI	GGCC	2 cut(s)	5, 120
BsoBI	CYCGRG	1 cut(s)	518
Bsp1286I	GDGCHC	2 cut(s)	348, 786
Bsp143I	GATC	4 cut(s)	229, 294, 358, 424
BspANI	GGCC	2 cut(s)	5, 120
BspCNI	CTCAG	4 cut(s)	19, 59, 648, 739
BspLI	GGNNCC	1 cut(s)	92
BspPI	GGATC	3 cut(s)	237, 366, 432
BspT107I	GGYRCC	1 cut(s)	90
BspTI	CTTAAG	1 cut(s)	503
BsrI	ACTGG	1 cut(s)	95
BssECI	CCNNGG	2 cut(s)	19, 69
BssMI	GATC	4 cut(s)	229, 294, 358, 424
BssSI	CACGAG	1 cut(s)	264
BssT1I	CCWWGG	1 cut(s)	19
Bst2BI	CACGAG	1 cut(s)	264
Bst2UI	CCWGG	1 cut(s)	70
Bst4CI	ACNGT	2 cut(s)	638, 709
Bst6I	CTCTTC	1 cut(s)	212
BstAFI	CTTAAG	1 cut(s)	503
BstBAI	YACGTR	1 cut(s)	478
BstC8I	GCNNGC	2 cut(s)	563, 717
BstDEI	CTNAG	4 cut(s)	27, 46, 656, 747
BstF5I	GGATG	1 cut(s)	400
BstKTI	GATC	4 cut(s)	232, 297, 361, 427
BstMAI	GTCTC	1 cut(s)	717
BstMBI	GATC	4 cut(s)	229, 294, 358, 424
BstNI	CCWGG	1 cut(s)	70
BstNSI	RCATGY	2 cut(s)	221, 719
BstSCI	CCNGG	1 cut(s)	68
BstSLI	GKGCMC	1 cut(s)	348
BstSNI	TACGTA	1 cut(s)	478
BstX2I	RGATCY	1 cut(s)	424
BstYI	RGATCY	1 cut(s)	424
BsuRI	GGCC	2 cut(s)	5, 120
BtsCI	GGATG	1 cut(s)	400
BtsIMutI	CAGTG	1 cut(s)	714
Cac8I	GCNNGC	2 cut(s)	563, 717
Csp6I	GTAC	3 cut(s)	91, 302, 684
CspCI	CAANNNNNGTGG	2 cut(s)	690, 725
CviAII	CATG	5 cut(s)	218, 226, 280, 676, 716
CviQI	GTAC	3 cut(s)	91, 302, 684
DdeI	CTNAG	4 cut(s)	27, 46, 656, 747
DpnI	GATC	4 cut(s)	231, 296, 360, 426
DpnII	GATC	4 cut(s)	229, 294, 358, 424
DraIII	CACNNNGTG	1 cut(s)	185
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	212
EarI	CTCTTC	1 cut(s)	212
Eco105I	TACGTA	1 cut(s)	478
Eco130I	CCWWGG	1 cut(s)	19
Eco57I	CTGAAG	1 cut(s)	392
Eco88I	CYCGRG	1 cut(s)	518
EcoRI	GAATTC	1 cut(s)	407
EcoRII	CCWGG	1 cut(s)	68
EcoT14I	CCWWGG	1 cut(s)	19
ErhI	CCWWGG	1 cut(s)	19
FaeI	CATG	5 cut(s)	221, 229, 283, 679, 719
FaqI	GGGAC	1 cut(s)	544
FatI	CATG	5 cut(s)	217, 225, 279, 675, 715
FauNDI	CATATG	1 cut(s)	414
FokI	GGATG	1 cut(s)	407
FspBI	CTAG	3 cut(s)	20, 692, 779
GsaI	CCCAGC	1 cut(s)	402
HaeIII	GGCC	2 cut(s)	5, 120
HapII	CCGG	1 cut(s)	6
Hin1II	CATG	5 cut(s)	221, 229, 283, 679, 719
HincII	GTYRAC	1 cut(s)	634
HindII	GTYRAC	1 cut(s)	634
HindIII	AAGCTT	1 cut(s)	438
HinfI	GANTC	5 cut(s)	41, 50, 667, 698, 773
HpaII	CCGG	1 cut(s)	6
Hpy166II	GTNNAC	2 cut(s)	346, 634
Hpy188I	TCNGA	7 cut(s)	28, 49, 367, 384, 622, 748, 799
Hpy8I	GTNNAC	2 cut(s)	346, 634
HpyAV	CCTTC	2 cut(s)	80, 697
HpyCH4III	ACNGT	2 cut(s)	638, 709
HpyCH4IV	ACGT	2 cut(s)	184, 477
HpyCH4V	TGCA	4 cut(s)	260, 346, 565, 719
HpyF3I	CTNAG	4 cut(s)	27, 46, 656, 747
HpySE526I	ACGT	2 cut(s)	184, 477
Hsp92II	CATG	5 cut(s)	221, 229, 283, 679, 719
KpnI	GGTACC	1 cut(s)	94
Kzo9I	GATC	4 cut(s)	229, 294, 358, 424
LmnI	GCTCC	2 cut(s)	367, 712
LweI	GCATC	2 cut(s)	164, 385
MaeI	CTAG	3 cut(s)	20, 692, 779
MaeII	ACGT	2 cut(s)	184, 477
MaeIII	GTNAC	1 cut(s)	473
MalI	GATC	4 cut(s)	231, 296, 360, 426
MboI	GATC	4 cut(s)	229, 294, 358, 424
MboII	GAAGA	3 cut(s)	199, 341, 416
MfeI	CAATTG	1 cut(s)	111
MflI	RGATCY	1 cut(s)	424
MhlI	GDGCHC	2 cut(s)	348, 786
MluCI	AATT	6 cut(s)	55, 111, 407, 537, 551, 702
MlyI	GAGTC	2 cut(s)	44, 707
MnlI	CCTC	8 cut(s)	55, 94, 110, 215, 233, 334, 600, 742
MseI	TTAA	3 cut(s)	77, 504, 540
MslI	CAYNNNNRTG	1 cut(s)	791
MspCI	CTTAAG	1 cut(s)	503
MspI	CCGG	1 cut(s)	6
MspR9I	CCNGG	1 cut(s)	70
MunI	CAATTG	1 cut(s)	111
MvaI	CCWGG	1 cut(s)	70
NdeI	CATATG	1 cut(s)	414
NdeII	GATC	4 cut(s)	229, 294, 358, 424
NlaIII	CATG	5 cut(s)	221, 229, 283, 679, 719
NlaIV	GGNNCC	1 cut(s)	92
NspI	RCATGY	2 cut(s)	221, 719
OliI	CACNNNNGTG	1 cut(s)	791
PaeI	GCATGC	1 cut(s)	719
PfeI	GAWTC	3 cut(s)	41, 667, 773
PleI	GAGTC	2 cut(s)	44, 706
PpsI	GAGTC	2 cut(s)	44, 706
Ppu21I	YACGTR	1 cut(s)	478
Psp6I	CCWGG	1 cut(s)	68
PspFI	CCCAGC	1 cut(s)	398
PspGI	CCWGG	1 cut(s)	68
PspN4I	GGNNCC	1 cut(s)	92
PsuI	RGATCY	1 cut(s)	424
RsaI	GTAC	3 cut(s)	92, 303, 685
RsaNI	GTAC	3 cut(s)	91, 302, 684
RseI	CAYNNNNRTG	1 cut(s)	791
SaqAI	TTAA	3 cut(s)	77, 504, 540
Sau3AI	GATC	4 cut(s)	229, 294, 358, 424
SchI	GAGTC	2 cut(s)	44, 707
ScrFI	CCNGG	1 cut(s)	70
SduI	GDGCHC	2 cut(s)	348, 786
SetI	ASST	9 cut(s)	131, 187, 345, 372, 442, 480, 592, 689, 753
SfaNI	GCATC	2 cut(s)	164, 385
SmiMI	CAYNNNNRTG	1 cut(s)	791
SmlI	CTYRAG	3 cut(s)	149, 503, 591
SmoI	CTYRAG	3 cut(s)	149, 503, 591
SnaBI	TACGTA	1 cut(s)	478
SphI	GCATGC	1 cut(s)	719
Sse9I	AATT	6 cut(s)	55, 111, 407, 537, 551, 702
SspI	AATATT	1 cut(s)	646
SspMI	CTAG	3 cut(s)	20, 692, 779
StyD4I	CCNGG	1 cut(s)	68
StyI	CCWWGG	1 cut(s)	19
TaaI	ACNGT	2 cut(s)	638, 709
TaiI	ACGT	2 cut(s)	187, 480
TasI	AATT	6 cut(s)	55, 111, 407, 537, 551, 702
TfiI	GAWTC	3 cut(s)	41, 667, 773
Tru1I	TTAA	3 cut(s)	77, 504, 540
Tru9I	TTAA	3 cut(s)	77, 504, 540
TscAI	CASTG	1 cut(s)	714
TspDTI	ATGAA	4 cut(s)	199, 296, 616, 728
TspRI	CASTG	1 cut(s)	714
Vha464I	CTTAAG	1 cut(s)	503
VneI	GTGCAC	1 cut(s)	344
XapI	RAATTY	1 cut(s)	407
XceI	RCATGY	2 cut(s)	221, 719
XmaJI	CCTAGG	1 cut(s)	19
XspI	CTAG	3 cut(s)	20, 692, 779

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.