Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007457.1

Orthogroup ID

OG0010325

Physical Location & Seq

Genomic Coordinates Reverse (-)

132973 .. 134576

Gene Structure 1604 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007457.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

atgtatgttgcaactcgtgggctatacagcatgaagcccccaacgatcattgtaccaaaatgtataaaagaagttgttgaagaactctttgaggtgcacagaaaaatggatcaatcggagctgaagcataatctgattggcttggatgctggagaagaattccatatgagaaaggatctcaaagtaaaagcttttaggacttatcatagaataccaagtcagggttacgtagtctattcggtaaaacataaacttaagcaggagtatctcggcctatctgggactgaaattaaagagttgaaattatcaggcgtgcagattacagacactttgatagaacctcaagttgctttcacaggagataccacatctgatttcatagttgacagtagtaatattgatgtgctgagagcaaagattcttgtcatggagagtaccttcctagatgagtcaattacagtggagcatgcaagagactatggacacattcatctatctgagataattaatcatgcagaaaggtttgaaaacaaagcaattcttcttattcacttctcagctcgatacacagtagaggaaattcaacaagctgtatcggcgttgccctctcctttagcagggcgagtttttgcacttacagaaggtttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0031123 GO:0034414 GO:0034470 GO:0034641 GO:0034660 GO:0042779 GO:0042780 GO:0042781 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043628 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901360 GO:1905267

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Lactamase_B_2

Protein Analysis

216

Amino Acids

24.55

Weight (kDa)

6.06

Isoelectric Point (pI)

42.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74700
fragaria_vesca	FvH4_5g15380 FvH4_5g15380 FvH4_5g15380 FvH4_5g15380
malus_domestica	MD06G1188900.v1.1
prunus_persica	Prupe.5G187500_v2.0.a1
pyrus_communis	pycom06g16770
rosa_chinensis	RchiOBHm_Chr7g0180691
rosa_laevigata	RLG00000005240
rosa_multiflora	Rmu_sc0007457.1_g000026 Rmu_sc0023372.1_g000013
rosa_roxburghii	Rroxscaffold_3G00272650
rosa_rugosa	Rorug06G0434900 Rorug06G0434900 Rorug06G0434900
rosa_samantha	Rh7AG036600 Rh7BG036400 Rh7CG038100 Rh7DG036600
rosa_wichuraiana	Rw7G003020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	117, 183
AcsI	RAATTY	2 cut(s)	158, 579
AcuI	CTGAAG	1 cut(s)	143
AfaI	GTAC	2 cut(s)	54, 436
AfiI	CCNNNNNNNGG	2 cut(s)	221, 617
AflII	CTTAAG	1 cut(s)	254
AgsI	TTSAA	4 cut(s)	80, 301, 527, 584
AluBI	AGCT	4 cut(s)	121, 191, 560, 590
AluI	AGCT	4 cut(s)	121, 191, 560, 590
Alw21I	GWGCWC	1 cut(s)	99
Alw26I	GTCTC	1 cut(s)	468
Alw44I	GTGCAC	1 cut(s)	95
AlwI	GGATC	2 cut(s)	117, 183
AoxI	GGCC	1 cut(s)	271
ApaLI	GTGCAC	1 cut(s)	95
ApoI	RAATTY	2 cut(s)	158, 579
AseI	ATTAAT	1 cut(s)	507
BaeGI	GKGCMC	1 cut(s)	99
BauI	CACGAG	1 cut(s)	15
Bbv12I	GWGCWC	1 cut(s)	99
BcoDI	GTCTC	1 cut(s)	468
BfaI	CTAG	1 cut(s)	443
BfrI	CTTAAG	1 cut(s)	254
BmsI	GCATC	1 cut(s)	136
BpmI	CTGGAG	1 cut(s)	171
BpuEI	CTTGAG	1 cut(s)	327
BsaAI	YACGTR	1 cut(s)	229
Bsc4I	CCNNNNNNNGG	2 cut(s)	221, 617
BseGI	GGATG	1 cut(s)	151
BseLI	CCNNNNNNNGG	2 cut(s)	221, 617
BseMII	CTCAG	3 cut(s)	398, 489, 570
BseSI	GKGCMC	1 cut(s)	99
BsgI	GTGCAG	1 cut(s)	335
BshFI	GGCC	1 cut(s)	273
BsiHKAI	GWGCWC	1 cut(s)	99
BslFI	GGGAC	1 cut(s)	295
BslI	CCNNNNNNNGG	2 cut(s)	221, 617
BsmAI	GTCTC	1 cut(s)	468
BsmFI	GGGAC	1 cut(s)	295
BsnI	GGCC	1 cut(s)	273
Bsp1286I	GDGCHC	1 cut(s)	99
Bsp143I	GATC	3 cut(s)	45, 109, 175
BspANI	GGCC	1 cut(s)	273
BspCNI	CTCAG	3 cut(s)	399, 490, 569
BspPI	GGATC	2 cut(s)	117, 183
BspTI	CTTAAG	1 cut(s)	254
BssMI	GATC	3 cut(s)	45, 109, 175
BssSI	CACGAG	1 cut(s)	15
Bst2BI	CACGAG	1 cut(s)	15
Bst4CI	ACNGT	3 cut(s)	389, 460, 571
BstAFI	CTTAAG	1 cut(s)	254
BstBAI	YACGTR	1 cut(s)	229
BstC8I	GCNNGC	2 cut(s)	314, 468
BstDEI	CTNAG	3 cut(s)	407, 498, 556
BstENI	CCTNNNNNAGG	1 cut(s)	615
BstF5I	GGATG	1 cut(s)	151
BstKTI	GATC	3 cut(s)	48, 112, 178
BstMAI	GTCTC	1 cut(s)	468
BstMBI	GATC	3 cut(s)	45, 109, 175
BstMWI	GCNNNNNNNGC	1 cut(s)	596
BstNSI	RCATGY	1 cut(s)	470
BstSLI	GKGCMC	1 cut(s)	99
BstSNI	TACGTA	1 cut(s)	229
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
BsuRI	GGCC	1 cut(s)	273
BtsCI	GGATG	1 cut(s)	151
BtsIMutI	CAGTG	1 cut(s)	465
Cac8I	GCNNGC	2 cut(s)	314, 468
Csp6I	GTAC	2 cut(s)	53, 435
CspCI	CAANNNNNGTGG	2 cut(s)	441, 476
CviAII	CATG	4 cut(s)	31, 427, 467, 512
CviJI	RGCY	8 cut(s)	22, 37, 121, 141, 191, 273, 560, 590
CviKI_1	RGCY	8 cut(s)	22, 37, 121, 141, 191, 273, 560, 590
CviQI	GTAC	2 cut(s)	53, 435
DdeI	CTNAG	3 cut(s)	407, 498, 556
DpnI	GATC	3 cut(s)	47, 111, 177
DpnII	GATC	3 cut(s)	45, 109, 175
Eco105I	TACGTA	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	143
EcoNI	CCTNNNNNAGG	1 cut(s)	615
EcoRI	GAATTC	1 cut(s)	158
FaeI	CATG	4 cut(s)	34, 430, 470, 515
FalI	AAGNNNNNCTT	2 cut(s)	525, 557
FaqI	GGGAC	1 cut(s)	295
FatI	CATG	4 cut(s)	30, 426, 466, 511
FauNDI	CATATG	1 cut(s)	165
FokI	GGATG	1 cut(s)	158
FspBI	CTAG	1 cut(s)	443
GsuI	CTGGAG	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	273
Hin1II	CATG	4 cut(s)	34, 430, 470, 515
HincII	GTYRAC	1 cut(s)	385
HindII	GTYRAC	1 cut(s)	385
HindIII	AAGCTT	1 cut(s)	189
HinfI	GANTC	2 cut(s)	418, 449
Hpy166II	GTNNAC	2 cut(s)	97, 385
Hpy188I	TCNGA	4 cut(s)	118, 135, 373, 499
Hpy8I	GTNNAC	2 cut(s)	97, 385
HpyAV	CCTTC	2 cut(s)	448, 635
HpyCH4III	ACNGT	3 cut(s)	389, 460, 571
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	6 cut(s)	11, 97, 316, 470, 515, 632
HpyF10VI	GCNNNNNNNGC	1 cut(s)	596
HpyF3I	CTNAG	3 cut(s)	407, 498, 556
HpySE526I	ACGT	1 cut(s)	228
Hsp92II	CATG	4 cut(s)	34, 430, 470, 515
Kzo9I	GATC	3 cut(s)	45, 109, 175
LmnI	GCTCC	2 cut(s)	118, 463
LpnPI	CCDG	7 cut(s)	135, 206, 245, 264, 294, 342, 603
LweI	GCATC	1 cut(s)	136
MaeI	CTAG	1 cut(s)	443
MaeII	ACGT	1 cut(s)	228
MaeIII	GTNAC	1 cut(s)	224
MalI	GATC	3 cut(s)	47, 111, 177
MboI	GATC	3 cut(s)	45, 109, 175
MboII	GAAGA	3 cut(s)	92, 167, 533
MflI	RGATCY	1 cut(s)	175
MhlI	GDGCHC	1 cut(s)	99
MluCI	AATT	7 cut(s)	158, 288, 302, 453, 504, 537, 579
MlyI	GAGTC	1 cut(s)	458
MnlI	CCTC	4 cut(s)	85, 351, 568, 616
MseI	TTAA	3 cut(s)	255, 291, 507
MspCI	CTTAAG	1 cut(s)	254
MwoI	GCNNNNNNNGC	1 cut(s)	596
NdeI	CATATG	1 cut(s)	165
NdeII	GATC	3 cut(s)	45, 109, 175
NlaIII	CATG	4 cut(s)	34, 430, 470, 515
NmeAIII	GCCGAG	1 cut(s)	249
NspI	RCATGY	1 cut(s)	470
PaeI	GCATGC	1 cut(s)	470
PfeI	GAWTC	1 cut(s)	418
PleI	GAGTC	1 cut(s)	457
PpsI	GAGTC	1 cut(s)	457
Ppu21I	YACGTR	1 cut(s)	229
PshBI	ATTAAT	1 cut(s)	507
PsuI	RGATCY	1 cut(s)	175
RsaI	GTAC	2 cut(s)	54, 436
RsaNI	GTAC	2 cut(s)	53, 435
SaqAI	TTAA	3 cut(s)	255, 291, 507
Sau3AI	GATC	3 cut(s)	45, 109, 175
SchI	GAGTC	1 cut(s)	458
SduI	GDGCHC	1 cut(s)	99
SfaNI	GCATC	1 cut(s)	136
SmlI	CTYRAG	2 cut(s)	254, 342
SmoI	CTYRAG	2 cut(s)	254, 342
SnaBI	TACGTA	1 cut(s)	229
SphI	GCATGC	1 cut(s)	470
Sse9I	AATT	7 cut(s)	158, 288, 302, 453, 504, 537, 579
SspI	AATATT	1 cut(s)	397
SspMI	CTAG	1 cut(s)	443
TaaI	ACNGT	3 cut(s)	389, 460, 571
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	1 cut(s)	562
TasI	AATT	7 cut(s)	158, 288, 302, 453, 504, 537, 579
TfiI	GAWTC	1 cut(s)	418
Tru1I	TTAA	3 cut(s)	255, 291, 507
Tru9I	TTAA	3 cut(s)	255, 291, 507
TscAI	CASTG	1 cut(s)	465
TspDTI	ATGAA	3 cut(s)	47, 367, 479
TspRI	CASTG	1 cut(s)	465
Vha464I	CTTAAG	1 cut(s)	254
VneI	GTGCAC	1 cut(s)	95
VspI	ATTAAT	1 cut(s)	507
XagI	CCTNNNNNAGG	1 cut(s)	615
XapI	RAATTY	2 cut(s)	158, 579
XceI	RCATGY	1 cut(s)	470
XspI	CTAG	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.