Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0010325

Physical Location & Seq

Genomic Coordinates Forward (+)

32589693 .. 32593883

Gene Structure 4191 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1188900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGCTGGAAGTAGAAGCAAAGACCCGAAACCCAATTCAGAACCCGACCCAGCTTCCAAAAAAGCCAGGGGATTGACCATTGAAGGTTACCCAATTGAAGGTTTGTCCATTGGCGGCCATGAAACCTGCATAATCTTCCCAACTCTCAACCTTTCCTTTGATATTGGTCGCTGCCCGCAGCGTGCTATTTCGAAGGACTTCCTCTTCATCTCCCACGCCCACATGGATCACATTGGAGGATTGCCCATGTATGTTGCAACCCGTGGGTTATACAGTATGAAGCCCCCGACGATAATTGTACCAAAGTGTATAAAAGAACTCGTGGAACAACTTTTTGAGGTGCACAGAAAAATGGACCAGTCAGAGCTGAAGCATAACCTTATTGGCTTGGATGTTGGAGAAGAATTCTCTATGAGAAGGGATCTCATCGTAAAAGCCTTTAGGACTTACCATGGAATACCAAGTCAGGGTTATGTAGTATACTCCGTAAAACAAAAACTTAAGCAGGAGTACCTTGGCCTTTCTGGGAATGAAATTAAAAACTTGAAATCATCAGGTGTTGAGATTACAAACACTTTTACAGAACCTCAAGTTGCTTTTACAGGAGATACCATGTCGGACTTCATAACTGACAGTAGTAATATTGATGTGCTGAAGGCAAAGATTCTTGTTGTGGAGAGCACCTTCGTAGATGACTCGGTTAAAGTGGAGCATGCCAGAGACTACGGACACATACATCTATCTGAGATAATTAGTCATGCAGAGAAGTTTGAAAACAAAGCAATTCTTCTTATTCACTTTTCCGCTCGATACACAGTACAGGAAATTGAACAAGCTGTGTCAGCGTTGCCTCCTCCTTTAGCAGGCCGAGTTTTTGCACTTACAGAAGGTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0031123 GO:0034414 GO:0034470 GO:0034641 GO:0034660 GO:0042779 GO:0042780 GO:0042781 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043628 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901360 GO:1905267

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Lactamase_B_2

Protein Analysis

299

Amino Acids

33.14

Weight (kDa)

6.31

Isoelectric Point (pI)

46.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lactamase_B_2	PF12706	66 - 267	1.6e-12	Beta-lactamase superfamily domain
Anti-Pycsar_Apyc1	PF23023	66 - 274	5.9e-08	Anti-Pycsar protein Apyc1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74700
fragaria_vesca	FvH4_5g15380 FvH4_5g15380 FvH4_5g15380 FvH4_5g15380
malus_domestica	MD06G1188900.v1.1
prunus_persica	Prupe.5G187500_v2.0.a1
pyrus_communis	pycom06g16770
rosa_chinensis	RchiOBHm_Chr7g0180691
rosa_laevigata	RLG00000005240
rosa_multiflora	Rmu_sc0007457.1_g000026 Rmu_sc0023372.1_g000013
rosa_roxburghii	Rroxscaffold_3G00272650
rosa_rugosa	Rorug06G0434900 Rorug06G0434900 Rorug06G0434900
rosa_samantha	Rh7AG036600 Rh7BG036400 Rh7CG038100 Rh7DG036600
rosa_wichuraiana	Rw7G003020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	134
AccBSI	CCGCTC	1 cut(s)	806
AccI	GTMKAC	1 cut(s)	480
AciI	CCGC	3 cut(s)	114, 176, 804
AclWI	GGATC	2 cut(s)	234, 429
AcoI	YGGCCR	1 cut(s)	115
AcsI	RAATTY	1 cut(s)	404
AcuI	CTGAAG	2 cut(s)	389, 674
AfaI	GTAC	3 cut(s)	300, 512, 819
AfiI	CCNNNNNNNGG	3 cut(s)	98, 467, 863
AflII	CTTAAG	1 cut(s)	500
AgsI	TTSAA	5 cut(s)	83, 98, 547, 773, 830
AjnI	CCWGG	1 cut(s)	65
AluBI	AGCT	3 cut(s)	53, 367, 836
AluI	AGCT	3 cut(s)	53, 367, 836
Alw21I	GWGCWC	2 cut(s)	345, 683
Alw26I	GTCTC	1 cut(s)	714
Alw44I	GTGCAC	1 cut(s)	341
AlwI	GGATC	2 cut(s)	234, 429
AoxI	GGCC	3 cut(s)	115, 517, 865
ApaLI	GTGCAC	1 cut(s)	341
ApeKI	GCWGC	2 cut(s)	171, 178
ApoI	RAATTY	1 cut(s)	404
Asp700I	GAANNNNTTC	1 cut(s)	197
AspS9I	GGNCC	1 cut(s)	355
AsuII	TTCGAA	1 cut(s)	191
AvaII	GGWCC	1 cut(s)	355
BaeGI	GKGCMC	1 cut(s)	345
BauI	CACGAG	1 cut(s)	320
Bbv12I	GWGCWC	2 cut(s)	345, 683
BbvI	GCAGC	2 cut(s)	158, 190
BciT130I	CCWGG	1 cut(s)	67
BcoDI	GTCTC	1 cut(s)	714
BfrI	CTTAAG	1 cut(s)	500
BfuAI	ACCTGC	1 cut(s)	134
BisI	GCNGC	3 cut(s)	115, 172, 179
BlsI	GCNGC	3 cut(s)	116, 173, 180
Bme1390I	CCNGG	1 cut(s)	67
Bme18I	GGWCC	1 cut(s)	355
BmgT120I	GGNCC	1 cut(s)	355
BmrFI	CCNGG	1 cut(s)	67
Bpu14I	TTCGAA	1 cut(s)	191
BpuEI	CTTGAG	1 cut(s)	573
BsaJI	CCNNGG	4 cut(s)	66, 262, 451, 514
Bsc4I	CCNNNNNNNGG	3 cut(s)	98, 467, 863
Bse1I	ACTGG	1 cut(s)	358
BseBI	CCWGG	1 cut(s)	67
BseDI	CCNNGG	4 cut(s)	66, 262, 451, 514
BseGI	GGATG	1 cut(s)	397
BseLI	CCNNNNNNNGG	3 cut(s)	98, 467, 863
BseMII	CTCAG	1 cut(s)	735
BseNI	ACTGG	1 cut(s)	358
BseRI	GAGGAG	1 cut(s)	843
BseSI	GKGCMC	1 cut(s)	345
BseXI	GCAGC	2 cut(s)	158, 190
BseYI	CCCAGC	1 cut(s)	49
BshFI	GGCC	3 cut(s)	117, 519, 867
BsiHKAI	GWGCWC	2 cut(s)	345, 683
BslI	CCNNNNNNNGG	3 cut(s)	98, 467, 863
BsmAI	GTCTC	1 cut(s)	714
BsnI	GGCC	3 cut(s)	117, 519, 867
Bsp119I	TTCGAA	1 cut(s)	191
Bsp1286I	GDGCHC	2 cut(s)	345, 683
Bsp143I	GATC	2 cut(s)	226, 421
Bsp19I	CCATGG	1 cut(s)	451
BspACI	CCGC	3 cut(s)	114, 176, 804
BspANI	GGCC	3 cut(s)	117, 519, 867
BspCNI	CTCAG	1 cut(s)	736
BspMI	ACCTGC	1 cut(s)	134
BspPI	GGATC	2 cut(s)	234, 429
BspT104I	TTCGAA	1 cut(s)	191
BspTI	CTTAAG	1 cut(s)	500
BsrBI	CCGCTC	1 cut(s)	806
BsrI	ACTGG	1 cut(s)	358
BssECI	CCNNGG	4 cut(s)	66, 262, 451, 514
BssMI	GATC	2 cut(s)	226, 421
BssNAI	GTATAC	1 cut(s)	481
BssSI	CACGAG	1 cut(s)	320
BssT1I	CCWWGG	2 cut(s)	451, 514
Bst1107I	GTATAC	1 cut(s)	481
Bst2BI	CACGAG	1 cut(s)	320
Bst2UI	CCWGG	1 cut(s)	67
Bst4CI	ACNGT	3 cut(s)	275, 635, 817
Bst6I	CTCTTC	1 cut(s)	209
BstAFI	CTTAAG	1 cut(s)	500
BstBI	TTCGAA	1 cut(s)	191
BstC8I	GCNNGC	4 cut(s)	176, 183, 714, 865
BstDEI	CTNAG	1 cut(s)	744
BstDSI	CCRYGG	2 cut(s)	262, 451
BstEII	GGTNACC	1 cut(s)	86
BstENI	CCTNNNNNAGG	1 cut(s)	861
BstF5I	GGATG	1 cut(s)	397
BstKTI	GATC	2 cut(s)	229, 424
BstMAI	GTCTC	1 cut(s)	714
BstMBI	GATC	2 cut(s)	226, 421
BstMWI	GCNNNNNNNGC	1 cut(s)	842
BstNI	CCWGG	1 cut(s)	67
BstNSI	RCATGY	1 cut(s)	716
BstPI	GGTNACC	1 cut(s)	86
BstSCI	CCNGG	1 cut(s)	65
BstSLI	GKGCMC	1 cut(s)	345
BstV1I	GCAGC	2 cut(s)	158, 190
BstX2I	RGATCY	1 cut(s)	421
BstYI	RGATCY	1 cut(s)	421
BstZ17I	GTATAC	1 cut(s)	481
BsuRI	GGCC	3 cut(s)	117, 519, 867
BtgI	CCRYGG	2 cut(s)	262, 451
BtsCI	GGATG	1 cut(s)	397
BveI	ACCTGC	1 cut(s)	134
Cac8I	GCNNGC	4 cut(s)	176, 183, 714, 865
Cfr13I	GGNCC	1 cut(s)	355
Csp6I	GTAC	3 cut(s)	299, 511, 818
CviAII	CATG	7 cut(s)	119, 223, 247, 452, 613, 713, 758
CviQI	GTAC	3 cut(s)	299, 511, 818
DdeI	CTNAG	1 cut(s)	744
DpnI	GATC	2 cut(s)	228, 423
DpnII	GATC	2 cut(s)	226, 421
EaeI	YGGCCR	1 cut(s)	115
Eam1104I	CTCTTC	1 cut(s)	209
EarI	CTCTTC	1 cut(s)	209
Eco130I	CCWWGG	2 cut(s)	451, 514
Eco47I	GGWCC	1 cut(s)	355
Eco57I	CTGAAG	2 cut(s)	389, 674
Eco91I	GGTNACC	1 cut(s)	86
EcoNI	CCTNNNNNAGG	1 cut(s)	861
EcoO65I	GGTNACC	1 cut(s)	86
EcoRI	GAATTC	1 cut(s)	404
EcoRII	CCWGG	1 cut(s)	65
EcoT14I	CCWWGG	2 cut(s)	451, 514
ErhI	CCWWGG	2 cut(s)	451, 514
FaeI	CATG	7 cut(s)	122, 226, 250, 455, 616, 716, 761
FalI	AAGNNNNNCTT	2 cut(s)	771, 803
FatI	CATG	7 cut(s)	118, 222, 246, 451, 612, 712, 757
FauI	CCCGC	1 cut(s)	183
FblI	GTMKAC	1 cut(s)	480
Fnu4HI	GCNGC	3 cut(s)	115, 172, 179
FokI	GGATG	1 cut(s)	404
Fsp4HI	GCNGC	3 cut(s)	115, 172, 179
GluI	GCNGC	3 cut(s)	115, 172, 179
GsaI	CCCAGC	1 cut(s)	53
HaeIII	GGCC	3 cut(s)	117, 519, 867
Hin1II	CATG	7 cut(s)	122, 226, 250, 455, 616, 716, 761
HinfI	GANTC	2 cut(s)	664, 695
Hpy166II	GTNNAC	2 cut(s)	343, 481
Hpy188I	TCNGA	4 cut(s)	40, 364, 619, 745
Hpy8I	GTNNAC	2 cut(s)	343, 481
Hpy99I	CGWCG	1 cut(s)	292
HpyAV	CCTTC	7 cut(s)	77, 92, 187, 411, 649, 694, 881
HpyCH4III	ACNGT	3 cut(s)	275, 635, 817
HpyCH4V	TGCA	5 cut(s)	129, 257, 343, 761, 878
HpyF10VI	GCNNNNNNNGC	1 cut(s)	842
HpyF3I	CTNAG	1 cut(s)	744
Hsp92II	CATG	7 cut(s)	122, 226, 250, 455, 616, 716, 761
Kzo9I	GATC	2 cut(s)	226, 421
LmnI	GCTCC	1 cut(s)	709
Lsp1109I	GCAGC	2 cut(s)	158, 190
MaeIII	GTNAC	1 cut(s)	86
MalI	GATC	2 cut(s)	228, 423
MbiI	CCGCTC	1 cut(s)	806
MboI	GATC	2 cut(s)	226, 421
MboII	GAAGA	4 cut(s)	127, 196, 413, 779
MfeI	CAATTG	1 cut(s)	93
MflI	RGATCY	1 cut(s)	421
MhlI	GDGCHC	2 cut(s)	345, 683
MluCI	AATT	8 cut(s)	34, 93, 294, 404, 534, 750, 783, 825
MlyI	GAGTC	1 cut(s)	689
MmeI	TCCRAC	2 cut(s)	376, 597
MnlI	CCTC	6 cut(s)	212, 230, 331, 597, 861, 864
MroXI	GAANNNNTTC	1 cut(s)	197
MseI	TTAA	3 cut(s)	501, 537, 702
MspCI	CTTAAG	1 cut(s)	500
MspR9I	CCNGG	1 cut(s)	67
MunI	CAATTG	1 cut(s)	93
MvaI	CCWGG	1 cut(s)	67
MwoI	GCNNNNNNNGC	1 cut(s)	842
NcoI	CCATGG	1 cut(s)	451
NdeII	GATC	2 cut(s)	226, 421
NlaIII	CATG	7 cut(s)	122, 226, 250, 455, 616, 716, 761
NmeAIII	GCCGAG	1 cut(s)	893
NspI	RCATGY	1 cut(s)	716
NspV	TTCGAA	1 cut(s)	191
PaeI	GCATGC	1 cut(s)	716
PdmI	GAANNNNTTC	1 cut(s)	197
PfeI	GAWTC	1 cut(s)	664
PkrI	GCNGC	3 cut(s)	116, 173, 180
PleI	GAGTC	1 cut(s)	689
PpsI	GAGTC	1 cut(s)	689
Psp6I	CCWGG	1 cut(s)	65
PspEI	GGTNACC	1 cut(s)	86
PspFI	CCCAGC	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	65
PspPI	GGNCC	1 cut(s)	355
PsuI	RGATCY	1 cut(s)	421
RsaI	GTAC	3 cut(s)	300, 512, 819
RsaNI	GTAC	3 cut(s)	299, 511, 818
SaqAI	TTAA	3 cut(s)	501, 537, 702
SatI	GCNGC	3 cut(s)	115, 172, 179
Sau3AI	GATC	2 cut(s)	226, 421
Sau96I	GGNCC	1 cut(s)	355
SchI	GAGTC	1 cut(s)	689
ScrFI	CCNGG	1 cut(s)	67
SduI	GDGCHC	2 cut(s)	345, 683
SfuI	TTCGAA	1 cut(s)	191
SinI	GGWCC	1 cut(s)	355
SmlI	CTYRAG	2 cut(s)	500, 588
SmoI	CTYRAG	2 cut(s)	500, 588
SphI	GCATGC	1 cut(s)	716
Sse9I	AATT	8 cut(s)	34, 93, 294, 404, 534, 750, 783, 825
SsiI	CCGC	3 cut(s)	114, 176, 804
SspI	AATATT	1 cut(s)	643
StyD4I	CCNGG	1 cut(s)	65
StyI	CCWWGG	2 cut(s)	451, 514
TaaI	ACNGT	3 cut(s)	275, 635, 817
TaqI	TCGA	2 cut(s)	191, 808
TasI	AATT	8 cut(s)	34, 93, 294, 404, 534, 750, 783, 825
TatI	WGTACW	1 cut(s)	817
TauI	GCSGC	1 cut(s)	117
TfiI	GAWTC	1 cut(s)	664
Tru1I	TTAA	3 cut(s)	501, 537, 702
Tru9I	TTAA	3 cut(s)	501, 537, 702
TseI	GCWGC	2 cut(s)	171, 178
TspDTI	ATGAA	5 cut(s)	135, 196, 293, 546, 613
TspGWI	ACGGA	2 cut(s)	475, 741
Vha464I	CTTAAG	1 cut(s)	500
VneI	GTGCAC	1 cut(s)	341
VpaK11BI	GGWCC	1 cut(s)	355
XagI	CCTNNNNNAGG	1 cut(s)	861
XapI	RAATTY	1 cut(s)	404
XceI	RCATGY	1 cut(s)	716
XmiI	GTMKAC	1 cut(s)	480
XmnI	GAANNNNTTC	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.