Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0010325

Physical Location & Seq

Genomic Coordinates Forward (+)

15469698 .. 15473185

Gene Structure 3488 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G187500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGACTGGAAGTAGAAGCAGAGACTCTGAGCAAGTCACGCAGAAACCCAATTCAGACTCAGACCCAGCTTCAAAGAAAGCCAGAGGCTTGACCATTGAAGGCTACCCAGTTGAAGGTTTGTCCATTGGAGGCCATGAAACCTGCATAATCTTCCCGACTCTTAATTTGTCTTTCGATATTGGACGCTGCCCACAGCGTGCTATCTCCCAGGACTTCCTCTTCATCTCTCATGCTCATATGGATCACATTGGAGGACTTCCCATGTATGTCGCAACACGTGGATTGTACAGTATGAAGCCCCCAACAATCATTGTACCCACATGTATAAAAGAAGTTGTGGAACAACTTTTTGAGGTGCACAGAAAAATGGACCAATCAGAGCTGAAGCATAATCTAATTGGCTTGGATGTTGGAGAAGAAGTCTATTTGAGAAAGGATCTCAAAGTAAAAGCTTTTAAGACTTATCATGTAATACCAAGTCAGGGTTATGTTGTATACTCAATAAAACAGAAACTTAAGCAGGAGTACGTTGGCCTTTCTGGGAATGAAATTAAAAACTTGAAATCATCAGGTGTTGAGATTACAAACACTTCTACAGAACCTCAAGTGGCTTTTACAGGAGATACCATGTCTGACTTCATAACTGACAGTAGTAATTTTGATGTGCTGAAAGCGAAGATTCTTGTTGTGGAGAGCACCTTCCTAGATGACTCAGTTAAGGTGGAGCACGCAAGAGAGTACGGACACATGCATCTATCCGAGATAATTAGTCATGCAGAGAAGTTTGAAAACAAAGCAATTCTTCTTGTTCACTTTTCAGCTCGGTACACAGTAAAGGAAATTGAACAAGCTGTATCAGTGTTGCCTTCTCCTTTGGCAGGCCGAGTTTTTGCACTTACAGAAGGTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0031123 GO:0034414 GO:0034470 GO:0034641 GO:0034660 GO:0042779 GO:0042780 GO:0042781 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043628 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901360 GO:1905267

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Lactamase_B_2

Protein Analysis

304

Amino Acids

33.73

Weight (kDa)

6.18

Isoelectric Point (pI)

43.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74700
fragaria_vesca	FvH4_5g15380 FvH4_5g15380 FvH4_5g15380 FvH4_5g15380
malus_domestica	MD06G1188900.v1.1
prunus_persica	Prupe.5G187500_v2.0.a1
pyrus_communis	pycom06g16770
rosa_chinensis	RchiOBHm_Chr7g0180691
rosa_laevigata	RLG00000005240
rosa_multiflora	Rmu_sc0007457.1_g000026 Rmu_sc0023372.1_g000013
rosa_roxburghii	Rroxscaffold_3G00272650
rosa_rugosa	Rorug06G0434900 Rorug06G0434900 Rorug06G0434900
rosa_samantha	Rh7AG036600 Rh7BG036400 Rh7CG038100 Rh7DG036600
rosa_wichuraiana	Rw7G003020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	149
AccI	GTMKAC	1 cut(s)	495
AclWI	GGATC	2 cut(s)	249, 444
AcuI	CTGAAG	1 cut(s)	404
AcvI	CACGTG	1 cut(s)	278
AdeI	CACNNNGTG	1 cut(s)	197
AfaI	GTAC	5 cut(s)	287, 315, 527, 740, 827
AfiI	CCNNNNNNNGG	3 cut(s)	113, 482, 878
AflII	CTTAAG	1 cut(s)	515
AflIII	ACRYGT	2 cut(s)	275, 320
AgsI	TTSAA	6 cut(s)	72, 98, 113, 562, 788, 845
AjnI	CCWGG	1 cut(s)	207
AluBI	AGCT	5 cut(s)	68, 382, 452, 821, 851
AluI	AGCT	5 cut(s)	68, 382, 452, 821, 851
Alw21I	GWGCWC	3 cut(s)	360, 698, 729
Alw26I	GTCTC	1 cut(s)	15
Alw44I	GTGCAC	1 cut(s)	356
AlwI	GGATC	2 cut(s)	249, 444
AoxI	GGCC	3 cut(s)	130, 532, 880
ApaLI	GTGCAC	1 cut(s)	356
ApeKI	GCWGC	1 cut(s)	186
ArsI	GACNNNNNNTTYG	2 cut(s)	148, 180
AspS9I	GGNCC	1 cut(s)	370
AvaII	GGWCC	1 cut(s)	370
BaeGI	GKGCMC	1 cut(s)	360
BbrPI	CACGTG	1 cut(s)	278
Bbv12I	GWGCWC	3 cut(s)	360, 698, 729
BbvI	GCAGC	1 cut(s)	173
BciT130I	CCWGG	1 cut(s)	209
BcoDI	GTCTC	1 cut(s)	15
BfaI	CTAG	1 cut(s)	704
BfmI	CTRYAG	1 cut(s)	594
BfrI	CTTAAG	1 cut(s)	515
BfuAI	ACCTGC	1 cut(s)	149
BisI	GCNGC	1 cut(s)	187
BlsI	GCNGC	1 cut(s)	188
Bme1390I	CCNGG	1 cut(s)	209
Bme18I	GGWCC	1 cut(s)	370
BmgT120I	GGNCC	1 cut(s)	370
BmrFI	CCNGG	1 cut(s)	209
BmrI	ACTGGG	1 cut(s)	101
BmsI	GCATC	1 cut(s)	760
BmuI	ACTGGG	1 cut(s)	101
BpuEI	CTTGAG	1 cut(s)	588
BsaAI	YACGTR	1 cut(s)	278
BsaJI	CCNNGG	1 cut(s)	207
BsaXI	ACNNNNNCTCC	2 cut(s)	405, 435
Bsc4I	CCNNNNNNNGG	3 cut(s)	113, 482, 878
Bse1I	ACTGG	2 cut(s)	10, 107
BseBI	CCWGG	1 cut(s)	209
BseDI	CCNNGG	1 cut(s)	207
BseGI	GGATG	1 cut(s)	412
BseLI	CCNNNNNNNGG	3 cut(s)	113, 482, 878
BseMII	CTCAG	3 cut(s)	18, 72, 726
BseNI	ACTGG	2 cut(s)	10, 107
BseSI	GKGCMC	1 cut(s)	360
BseXI	GCAGC	1 cut(s)	173
BseYI	CCCAGC	1 cut(s)	64
BshFI	GGCC	3 cut(s)	132, 534, 882
BsiHKAI	GWGCWC	3 cut(s)	360, 698, 729
BslI	CCNNNNNNNGG	3 cut(s)	113, 482, 878
BsmAI	GTCTC	1 cut(s)	15
BsnI	GGCC	3 cut(s)	132, 534, 882
Bsp1286I	GDGCHC	3 cut(s)	360, 698, 729
Bsp1407I	TGTACA	1 cut(s)	285
Bsp143I	GATC	2 cut(s)	241, 436
BspANI	GGCC	3 cut(s)	132, 534, 882
BspCNI	CTCAG	3 cut(s)	19, 71, 725
BspMI	ACCTGC	1 cut(s)	149
BspPI	GGATC	2 cut(s)	249, 444
BspTI	CTTAAG	1 cut(s)	515
BsrGI	TGTACA	1 cut(s)	285
BsrI	ACTGG	2 cut(s)	10, 107
BssECI	CCNNGG	1 cut(s)	207
BssMI	GATC	2 cut(s)	241, 436
BssNAI	GTATAC	1 cut(s)	496
Bst1107I	GTATAC	1 cut(s)	496
Bst2UI	CCWGG	1 cut(s)	209
Bst4CI	ACNGT	3 cut(s)	290, 650, 832
Bst6I	CTCTTC	1 cut(s)	224
BstAFI	CTTAAG	1 cut(s)	515
BstAUI	TGTACA	1 cut(s)	285
BstBAI	YACGTR	1 cut(s)	278
BstC8I	GCNNGC	3 cut(s)	198, 729, 880
BstDEI	CTNAG	3 cut(s)	27, 58, 712
BstENI	CCTNNNNNAGG	1 cut(s)	876
BstF5I	GGATG	1 cut(s)	412
BstKTI	GATC	2 cut(s)	244, 439
BstMAI	GTCTC	1 cut(s)	15
BstMBI	GATC	2 cut(s)	241, 436
BstMWI	GCNNNNNNNGC	1 cut(s)	37
BstNI	CCWGG	1 cut(s)	209
BstNSI	RCATGY	2 cut(s)	324, 751
BstSCI	CCNGG	1 cut(s)	207
BstSFI	CTRYAG	1 cut(s)	594
BstSLI	GKGCMC	1 cut(s)	360
BstV1I	GCAGC	1 cut(s)	173
BstX2I	RGATCY	1 cut(s)	436
BstYI	RGATCY	1 cut(s)	436
BstZ17I	GTATAC	1 cut(s)	496
BsuRI	GGCC	3 cut(s)	132, 534, 882
BtsCI	GGATG	1 cut(s)	412
BtsIMutI	CAGTG	1 cut(s)	864
BveI	ACCTGC	1 cut(s)	149
Cac8I	GCNNGC	3 cut(s)	198, 729, 880
Cfr13I	GGNCC	1 cut(s)	370
CseI	GACGC	1 cut(s)	192
Csp6I	GTAC	5 cut(s)	286, 314, 526, 739, 826
CviAII	CATG	8 cut(s)	134, 230, 262, 321, 467, 628, 748, 773
CviQI	GTAC	5 cut(s)	286, 314, 526, 739, 826
DdeI	CTNAG	3 cut(s)	27, 58, 712
DpnI	GATC	2 cut(s)	243, 438
DpnII	GATC	2 cut(s)	241, 436
DraIII	CACNNNGTG	1 cut(s)	197
Eam1104I	CTCTTC	1 cut(s)	224
EarI	CTCTTC	1 cut(s)	224
Eco47I	GGWCC	1 cut(s)	370
Eco57I	CTGAAG	1 cut(s)	404
Eco72I	CACGTG	1 cut(s)	278
EcoNI	CCTNNNNNAGG	1 cut(s)	876
EcoRII	CCWGG	1 cut(s)	207
EcoT22I	ATGCAT	1 cut(s)	753
FaeI	CATG	8 cut(s)	137, 233, 265, 324, 470, 631, 751, 776
FalI	AAGNNNNNCTT	2 cut(s)	786, 818
FatI	CATG	8 cut(s)	133, 229, 261, 320, 466, 627, 747, 772
FauNDI	CATATG	1 cut(s)	237
FblI	GTMKAC	1 cut(s)	495
Fnu4HI	GCNGC	1 cut(s)	187
FokI	GGATG	1 cut(s)	419
Fsp4HI	GCNGC	1 cut(s)	187
FspBI	CTAG	1 cut(s)	704
GluI	GCNGC	1 cut(s)	187
GsaI	CCCAGC	1 cut(s)	68
HaeIII	GGCC	3 cut(s)	132, 534, 882
HgaI	GACGC	1 cut(s)	192
Hin1II	CATG	8 cut(s)	137, 233, 265, 324, 470, 631, 751, 776
HindIII	AAGCTT	1 cut(s)	450
HinfI	GANTC	5 cut(s)	23, 56, 157, 679, 710
Hpy166II	GTNNAC	4 cut(s)	358, 496, 811, 828
Hpy188I	TCNGA	6 cut(s)	28, 55, 61, 379, 634, 760
Hpy188III	TCNNGA	1 cut(s)	154
Hpy8I	GTNNAC	4 cut(s)	358, 496, 811, 828
HpyAV	CCTTC	5 cut(s)	92, 107, 709, 876, 896
HpyCH4III	ACNGT	3 cut(s)	290, 650, 832
HpyCH4IV	ACGT	2 cut(s)	277, 528
HpyCH4V	TGCA	5 cut(s)	144, 358, 751, 776, 893
HpyF10VI	GCNNNNNNNGC	1 cut(s)	37
HpyF3I	CTNAG	3 cut(s)	27, 58, 712
HpySE526I	ACGT	2 cut(s)	277, 528
Hsp92II	CATG	8 cut(s)	137, 233, 265, 324, 470, 631, 751, 776
Kzo9I	GATC	2 cut(s)	241, 436
LmnI	GCTCC	1 cut(s)	724
Lsp1109I	GCAGC	1 cut(s)	173
LweI	GCATC	1 cut(s)	760
MaeI	CTAG	1 cut(s)	704
MaeII	ACGT	2 cut(s)	277, 528
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	2 cut(s)	243, 438
MboI	GATC	2 cut(s)	241, 436
MboII	GAAGA	5 cut(s)	142, 211, 428, 688, 794
MflI	RGATCY	1 cut(s)	436
MhlI	GDGCHC	3 cut(s)	360, 698, 729
MluCI	AATT	8 cut(s)	49, 163, 396, 549, 655, 765, 798, 840
MlyI	GAGTC	4 cut(s)	17, 50, 151, 704
MmeI	TCCRAC	1 cut(s)	391
MnlI	CCTC	6 cut(s)	77, 122, 227, 245, 346, 612
Mph1103I	ATGCAT	1 cut(s)	753
MseI	TTAA	5 cut(s)	162, 456, 516, 552, 717
MspCI	CTTAAG	1 cut(s)	515
MspR9I	CCNGG	1 cut(s)	209
MvaI	CCWGG	1 cut(s)	209
MwoI	GCNNNNNNNGC	1 cut(s)	37
NdeI	CATATG	1 cut(s)	237
NdeII	GATC	2 cut(s)	241, 436
NlaIII	CATG	8 cut(s)	137, 233, 265, 324, 470, 631, 751, 776
NmeAIII	GCCGAG	1 cut(s)	908
NmuCI	GTSAC	1 cut(s)	34
NsiI	ATGCAT	1 cut(s)	753
NspI	RCATGY	2 cut(s)	324, 751
PciI	ACATGT	1 cut(s)	320
PfeI	GAWTC	1 cut(s)	679
PkrI	GCNGC	1 cut(s)	188
PleI	GAGTC	4 cut(s)	17, 50, 151, 704
PmaCI	CACGTG	1 cut(s)	278
PmlI	CACGTG	1 cut(s)	278
PpsI	GAGTC	4 cut(s)	17, 50, 151, 704
Ppu21I	YACGTR	1 cut(s)	278
PscI	ACATGT	1 cut(s)	320
Psp6I	CCWGG	1 cut(s)	207
PspCI	CACGTG	1 cut(s)	278
PspFI	CCCAGC	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	207
PspPI	GGNCC	1 cut(s)	370
PsuI	RGATCY	1 cut(s)	436
RsaI	GTAC	5 cut(s)	287, 315, 527, 740, 827
RsaNI	GTAC	5 cut(s)	286, 314, 526, 739, 826
SaqAI	TTAA	5 cut(s)	162, 456, 516, 552, 717
SatI	GCNGC	1 cut(s)	187
Sau3AI	GATC	2 cut(s)	241, 436
Sau96I	GGNCC	1 cut(s)	370
SchI	GAGTC	4 cut(s)	17, 50, 151, 704
ScrFI	CCNGG	1 cut(s)	209
SduI	GDGCHC	3 cut(s)	360, 698, 729
SfaNI	GCATC	1 cut(s)	760
SfcI	CTRYAG	1 cut(s)	594
SinI	GGWCC	1 cut(s)	370
SmlI	CTYRAG	2 cut(s)	515, 603
SmoI	CTYRAG	2 cut(s)	515, 603
Sse9I	AATT	8 cut(s)	49, 163, 396, 549, 655, 765, 798, 840
SspMI	CTAG	1 cut(s)	704
StyD4I	CCNGG	1 cut(s)	207
TaaI	ACNGT	3 cut(s)	290, 650, 832
TaiI	ACGT	2 cut(s)	280, 531
TaqI	TCGA	1 cut(s)	174
TasI	AATT	8 cut(s)	49, 163, 396, 549, 655, 765, 798, 840
TatI	WGTACW	1 cut(s)	285
TfiI	GAWTC	1 cut(s)	679
Tru1I	TTAA	5 cut(s)	162, 456, 516, 552, 717
Tru9I	TTAA	5 cut(s)	162, 456, 516, 552, 717
TscAI	CASTG	1 cut(s)	864
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	1 cut(s)	186
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	5 cut(s)	150, 211, 308, 561, 628
TspGWI	ACGGA	1 cut(s)	756
TspRI	CASTG	1 cut(s)	864
Vha464I	CTTAAG	1 cut(s)	515
VneI	GTGCAC	1 cut(s)	356
VpaK11BI	GGWCC	1 cut(s)	370
XagI	CCTNNNNNAGG	1 cut(s)	876
XceI	RCATGY	2 cut(s)	324, 751
XmiI	GTMKAC	1 cut(s)	495
XspI	CTAG	1 cut(s)	704
Zsp2I	ATGCAT	1 cut(s)	753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.