Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0010325

Physical Location & Seq

Genomic Coordinates Forward (+)

2498135 .. 2501152

Gene Structure 3018 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG036600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGCCGGAAGTAGAAGCATAGGCTCTGAGCCAATCCAAGATTCCTCAGACTCTAATTCAAAGAAAGCCAGGGGTTTAACCATTGAAGGGTACCCAGTTGAGGGTTTATCAATTGGAGGCCACGAAACCTGTGTAATCTTTCCATCTCTCAAGTTGTCATTTGATATTGGACGATGCCCACAACGTGCTATTGCCCAAGACTTCCTCTTCATCTCACATGCCCACATGGATCACATTGGAGGACTGCCTATGTATGTTGCAACTCGTGGGCTATACAGCATGAAGCCCCCAACGATCATTGTACCAAAATGTATAAAAGAAGTTGTTGAAGAACTCTTTGAGGTGCACAGAAAAATGGATCAATCGGAGCTGAAGCATAATCTGATTGGCTTGGATGCTGGAGAAGAATTCCATATGAGAAAGGATCTCAAAGTAAAAGCTTTTAGGACTTATCATAGAATACCAAGTCAGGGTTACGTAGTCTATTCGGTAAAACAAAAACTTAAGCAGGAGTATCTCGGCCTATCTGGGACTGAAATTAAAGAGTTGAAATTATCAGGCGTGGAGATTACAGACACTTTGATAGAACCTCAAGTTGCTTTCACAGGAGATACCACATCTGATTTCATAGTTGACAGTAGTAATATTGATGTGCTGAGAGCAAAGATTCTTGTCATGGAGAGTACCTTCCTAGATGAGTCGATCACGGTGGAGCATGCAAGAGACTATGGACACATTCATTTATCTGAGATAATTAATCATGCAGAAAGGTTTGAAAACAAAGCAATTCTTCTTATTCACTTCTCAGCTCGATACACAGTAGAGGTAAGACGATCAGTTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0031123 GO:0034414 GO:0034470 GO:0034641 GO:0034660 GO:0042779 GO:0042780 GO:0042781 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043628 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901360 GO:1905267

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Lactamase_B_2

Protein Analysis

281

Amino Acids

31.57

Weight (kDa)

6.23

Isoelectric Point (pI)

47.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lactamase_B_2	PF12706	67 - 268	1.4e-11	Beta-lactamase superfamily domain
Anti-Pycsar_Apyc1	PF23023	67 - 269	9.5e-08	Anti-Pycsar protein Apyc1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74700
fragaria_vesca	FvH4_5g15380 FvH4_5g15380 FvH4_5g15380 FvH4_5g15380
malus_domestica	MD06G1188900.v1.1
prunus_persica	Prupe.5G187500_v2.0.a1
pyrus_communis	pycom06g16770
rosa_chinensis	RchiOBHm_Chr7g0180691
rosa_laevigata	RLG00000005240
rosa_multiflora	Rmu_sc0007457.1_g000026 Rmu_sc0023372.1_g000013
rosa_roxburghii	Rroxscaffold_3G00272650
rosa_rugosa	Rorug06G0434900 Rorug06G0434900 Rorug06G0434900
rosa_samantha	Rh7AG036600 Rh7BG036400 Rh7CG038100 Rh7DG036600
rosa_wichuraiana	Rw7G003020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	90
AccB1I	GGYRCC	1 cut(s)	90
AclWI	GGATC	3 cut(s)	237, 366, 432
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	407
AcuI	CTGAAG	1 cut(s)	392
AdeI	CACNNNGTG	1 cut(s)	185
AfaI	GTAC	3 cut(s)	92, 303, 685
AfiI	CCNNNNNNNGG	4 cut(s)	87, 100, 101, 470
AflII	CTTAAG	1 cut(s)	503
AgsI	TTSAA	5 cut(s)	60, 86, 329, 550, 776
AjnI	CCWGG	1 cut(s)	68
AjuI	GAANNNNNNNTTGG	2 cut(s)	25, 57
AluBI	AGCT	3 cut(s)	370, 440, 809
AluI	AGCT	3 cut(s)	370, 440, 809
Alw21I	GWGCWC	1 cut(s)	348
Alw26I	GTCTC	1 cut(s)	717
Alw44I	GTGCAC	1 cut(s)	344
AlwI	GGATC	3 cut(s)	237, 366, 432
AoxI	GGCC	3 cut(s)	3, 118, 520
ApaLI	GTGCAC	1 cut(s)	344
ApoI	RAATTY	1 cut(s)	407
AseI	ATTAAT	1 cut(s)	756
Asp718I	GGTACC	1 cut(s)	90
BaeGI	GKGCMC	1 cut(s)	348
BanI	GGYRCC	1 cut(s)	90
BauI	CACGAG	1 cut(s)	264
Bbv12I	GWGCWC	1 cut(s)	348
BccI	CCATC	1 cut(s)	151
BciT130I	CCWGG	1 cut(s)	70
BcoDI	GTCTC	1 cut(s)	717
BfaI	CTAG	1 cut(s)	692
BfrI	CTTAAG	1 cut(s)	503
Bme1390I	CCNGG	1 cut(s)	70
BmiI	GGNNCC	1 cut(s)	92
BmrFI	CCNGG	1 cut(s)	70
BmrI	ACTGGG	1 cut(s)	89
BmsI	GCATC	2 cut(s)	164, 385
BmuI	ACTGGG	1 cut(s)	89
BpmI	CTGGAG	1 cut(s)	420
BpuEI	CTTGAG	2 cut(s)	134, 576
BsaAI	YACGTR	1 cut(s)	478
BsaJI	CCNNGG	1 cut(s)	69
Bsc4I	CCNNNNNNNGG	4 cut(s)	87, 100, 101, 470
Bse1I	ACTGG	1 cut(s)	95
BseBI	CCWGG	1 cut(s)	70
BseDI	CCNNGG	1 cut(s)	69
BseGI	GGATG	1 cut(s)	400
BseLI	CCNNNNNNNGG	4 cut(s)	87, 100, 101, 470
BseMII	CTCAG	5 cut(s)	18, 60, 647, 738, 819
BseNI	ACTGG	1 cut(s)	95
BseSI	GKGCMC	1 cut(s)	348
BshFI	GGCC	3 cut(s)	5, 120, 522
BshNI	GGYRCC	1 cut(s)	90
BsiHKAI	GWGCWC	1 cut(s)	348
BsiSI	CCGG	1 cut(s)	6
BslFI	GGGAC	1 cut(s)	544
BslI	CCNNNNNNNGG	4 cut(s)	87, 100, 101, 470
BsmAI	GTCTC	1 cut(s)	717
BsmFI	GGGAC	1 cut(s)	544
BsnI	GGCC	3 cut(s)	5, 120, 522
Bsp1286I	GDGCHC	1 cut(s)	348
Bsp143I	GATC	6 cut(s)	229, 294, 358, 424, 702, 833
BspANI	GGCC	3 cut(s)	5, 120, 522
BspCNI	CTCAG	5 cut(s)	19, 59, 648, 739, 818
BspLI	GGNNCC	1 cut(s)	92
BspPI	GGATC	3 cut(s)	237, 366, 432
BspT107I	GGYRCC	1 cut(s)	90
BspTI	CTTAAG	1 cut(s)	503
BsrI	ACTGG	1 cut(s)	95
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	6 cut(s)	229, 294, 358, 424, 702, 833
BssSI	CACGAG	1 cut(s)	264
Bst2BI	CACGAG	1 cut(s)	264
Bst2UI	CCWGG	1 cut(s)	70
Bst4CI	ACNGT	3 cut(s)	638, 709, 820
Bst6I	CTCTTC	1 cut(s)	212
BstAFI	CTTAAG	1 cut(s)	503
BstBAI	YACGTR	1 cut(s)	478
BstC8I	GCNNGC	1 cut(s)	717
BstDEI	CTNAG	5 cut(s)	27, 46, 656, 747, 805
BstF5I	GGATG	1 cut(s)	400
BstKTI	GATC	6 cut(s)	232, 297, 361, 427, 705, 836
BstMAI	GTCTC	1 cut(s)	717
BstMBI	GATC	6 cut(s)	229, 294, 358, 424, 702, 833
BstNI	CCWGG	1 cut(s)	70
BstNSI	RCATGY	2 cut(s)	221, 719
BstSCI	CCNGG	1 cut(s)	68
BstSLI	GKGCMC	1 cut(s)	348
BstSNI	TACGTA	1 cut(s)	478
BstX2I	RGATCY	1 cut(s)	424
BstYI	RGATCY	1 cut(s)	424
BsuRI	GGCC	3 cut(s)	5, 120, 522
BtsCI	GGATG	1 cut(s)	400
Cac8I	GCNNGC	1 cut(s)	717
Csp6I	GTAC	3 cut(s)	91, 302, 684
CviAII	CATG	6 cut(s)	218, 226, 280, 676, 716, 761
CviQI	GTAC	3 cut(s)	91, 302, 684
DdeI	CTNAG	5 cut(s)	27, 46, 656, 747, 805
DpnI	GATC	6 cut(s)	231, 296, 360, 426, 704, 835
DpnII	GATC	6 cut(s)	229, 294, 358, 424, 702, 833
DraIII	CACNNNGTG	1 cut(s)	185
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	212
EarI	CTCTTC	1 cut(s)	212
Eco105I	TACGTA	1 cut(s)	478
Eco57I	CTGAAG	1 cut(s)	392
EcoRI	GAATTC	1 cut(s)	407
EcoRII	CCWGG	1 cut(s)	68
FaeI	CATG	6 cut(s)	221, 229, 283, 679, 719, 764
FalI	AAGNNNNNCTT	2 cut(s)	774, 806
FaqI	GGGAC	1 cut(s)	544
FatI	CATG	6 cut(s)	217, 225, 279, 675, 715, 760
FauNDI	CATATG	1 cut(s)	414
FokI	GGATG	1 cut(s)	407
FspBI	CTAG	1 cut(s)	692
GsuI	CTGGAG	1 cut(s)	420
HaeIII	GGCC	3 cut(s)	5, 120, 522
HapII	CCGG	1 cut(s)	6
Hin1II	CATG	6 cut(s)	221, 229, 283, 679, 719, 764
HincII	GTYRAC	1 cut(s)	634
HindII	GTYRAC	1 cut(s)	634
HindIII	AAGCTT	1 cut(s)	438
HinfI	GANTC	4 cut(s)	41, 50, 667, 698
HpaII	CCGG	1 cut(s)	6
Hpy166II	GTNNAC	2 cut(s)	346, 634
Hpy188I	TCNGA	6 cut(s)	28, 49, 367, 384, 622, 748
Hpy8I	GTNNAC	2 cut(s)	346, 634
HpyAV	CCTTC	2 cut(s)	80, 697
HpyCH4III	ACNGT	3 cut(s)	638, 709, 820
HpyCH4IV	ACGT	2 cut(s)	184, 477
HpyCH4V	TGCA	4 cut(s)	260, 346, 719, 764
HpyF3I	CTNAG	5 cut(s)	27, 46, 656, 747, 805
HpySE526I	ACGT	2 cut(s)	184, 477
Hsp92II	CATG	6 cut(s)	221, 229, 283, 679, 719, 764
KpnI	GGTACC	1 cut(s)	94
Kzo9I	GATC	6 cut(s)	229, 294, 358, 424, 702, 833
LmnI	GCTCC	2 cut(s)	367, 712
LweI	GCATC	2 cut(s)	164, 385
MaeI	CTAG	1 cut(s)	692
MaeII	ACGT	2 cut(s)	184, 477
MaeIII	GTNAC	1 cut(s)	473
MalI	GATC	6 cut(s)	231, 296, 360, 426, 704, 835
MboI	GATC	6 cut(s)	229, 294, 358, 424, 702, 833
MboII	GAAGA	4 cut(s)	199, 341, 416, 782
MfeI	CAATTG	1 cut(s)	111
MflI	RGATCY	1 cut(s)	424
MhlI	GDGCHC	1 cut(s)	348
MluCI	AATT	7 cut(s)	55, 111, 407, 537, 551, 753, 786
MlyI	GAGTC	2 cut(s)	44, 707
MnlI	CCTC	8 cut(s)	55, 94, 110, 215, 233, 334, 600, 817
MseI	TTAA	4 cut(s)	77, 504, 540, 756
MspCI	CTTAAG	1 cut(s)	503
MspI	CCGG	1 cut(s)	6
MspR9I	CCNGG	1 cut(s)	70
MunI	CAATTG	1 cut(s)	111
MvaI	CCWGG	1 cut(s)	70
NdeI	CATATG	1 cut(s)	414
NdeII	GATC	6 cut(s)	229, 294, 358, 424, 702, 833
NlaIII	CATG	6 cut(s)	221, 229, 283, 679, 719, 764
NlaIV	GGNNCC	1 cut(s)	92
NmeAIII	GCCGAG	1 cut(s)	498
NspI	RCATGY	2 cut(s)	221, 719
PaeI	GCATGC	1 cut(s)	719
PfeI	GAWTC	2 cut(s)	41, 667
PleI	GAGTC	2 cut(s)	44, 706
PpsI	GAGTC	2 cut(s)	44, 706
Ppu21I	YACGTR	1 cut(s)	478
PshBI	ATTAAT	1 cut(s)	756
Psp6I	CCWGG	1 cut(s)	68
PspGI	CCWGG	1 cut(s)	68
PspN4I	GGNNCC	1 cut(s)	92
PsuI	RGATCY	1 cut(s)	424
RsaI	GTAC	3 cut(s)	92, 303, 685
RsaNI	GTAC	3 cut(s)	91, 302, 684
SaqAI	TTAA	4 cut(s)	77, 504, 540, 756
Sau3AI	GATC	6 cut(s)	229, 294, 358, 424, 702, 833
SchI	GAGTC	2 cut(s)	44, 707
ScrFI	CCNGG	1 cut(s)	70
SduI	GDGCHC	1 cut(s)	348
SfaNI	GCATC	2 cut(s)	164, 385
SmlI	CTYRAG	3 cut(s)	149, 503, 591
SmoI	CTYRAG	3 cut(s)	149, 503, 591
SnaBI	TACGTA	1 cut(s)	478
SphI	GCATGC	1 cut(s)	719
Sse9I	AATT	7 cut(s)	55, 111, 407, 537, 551, 753, 786
SspI	AATATT	1 cut(s)	646
SspMI	CTAG	1 cut(s)	692
StyD4I	CCNGG	1 cut(s)	68
TaaI	ACNGT	3 cut(s)	638, 709, 820
TaiI	ACGT	2 cut(s)	187, 480
TaqI	TCGA	2 cut(s)	701, 811
TasI	AATT	7 cut(s)	55, 111, 407, 537, 551, 753, 786
TfiI	GAWTC	2 cut(s)	41, 667
Tru1I	TTAA	4 cut(s)	77, 504, 540, 756
Tru9I	TTAA	4 cut(s)	77, 504, 540, 756
TspDTI	ATGAA	5 cut(s)	199, 296, 616, 728, 831
Vha464I	CTTAAG	1 cut(s)	503
VneI	GTGCAC	1 cut(s)	344
VspI	ATTAAT	1 cut(s)	756
XapI	RAATTY	1 cut(s)	407
XceI	RCATGY	2 cut(s)	221, 719
XspI	CTAG	1 cut(s)	692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.