Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0010325

Physical Location & Seq

Genomic Coordinates Forward (+)

20924315 .. 20925629

Gene Structure 1315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g16770.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGCCGGAAGTAGAAGCAAAGACCCGAAACCCAATTCAGAACCCGACCCAGCTTCCAAAAAAGTCAGGGGATTGACCATTGAAGGTTACCCAATTGAAGGTTTGTCCATTGGCGGCCATGAAACCTGCATAATCTTCCCAAGTCTCAACCTTTCCTTTGATATTGGTCGCTGCCCGCAGCGTGCTATTTCGAAGGACTTCCTCTTCATCTCCCACGCCCACATGGATCACATTGGAGGATTGCCCATGTATGTTGCAACCCGTGGGTTATACAGTATGAAGCCCCCGACGATAATTGTACCAAAGTGTATAAAAGAACTCGTGGAACAACTTTTTGAGGTGCACAGAAAAATGGACCAGTCGGAGCTGAAGCATAACCTTATTGGCTTGGATGTTGGAGAAGAATTCTCTATGAGAAGGGATCGATCATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0031123 GO:0034414 GO:0034470 GO:0034641 GO:0034660 GO:0042779 GO:0042780 GO:0042781 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043628 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901360 GO:1905267

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Lactamase_B_2

Protein Analysis

145

Amino Acids

16.12

Weight (kDa)

7.77

Isoelectric Point (pI)

52.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74700
fragaria_vesca	FvH4_5g15380 FvH4_5g15380 FvH4_5g15380 FvH4_5g15380
malus_domestica	MD06G1188900.v1.1
prunus_persica	Prupe.5G187500_v2.0.a1
pyrus_communis	pycom06g16770
rosa_chinensis	RchiOBHm_Chr7g0180691
rosa_laevigata	RLG00000005240
rosa_multiflora	Rmu_sc0007457.1_g000026 Rmu_sc0023372.1_g000013
rosa_roxburghii	Rroxscaffold_3G00272650
rosa_rugosa	Rorug06G0434900 Rorug06G0434900 Rorug06G0434900
rosa_samantha	Rh7AG036600 Rh7BG036400 Rh7CG038100 Rh7DG036600
rosa_wichuraiana	Rw7G003020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	134
AciI	CCGC	2 cut(s)	114, 176
AclWI	GGATC	2 cut(s)	234, 429
AcoI	YGGCCR	2 cut(s)	3, 115
AcsI	RAATTY	1 cut(s)	404
AcuI	CTGAAG	1 cut(s)	389
AfaI	GTAC	1 cut(s)	300
AfiI	CCNNNNNNNGG	1 cut(s)	98
AgsI	TTSAA	2 cut(s)	83, 98
AluBI	AGCT	2 cut(s)	53, 367
AluI	AGCT	2 cut(s)	53, 367
Alw21I	GWGCWC	1 cut(s)	345
Alw26I	GTCTC	1 cut(s)	149
Alw44I	GTGCAC	1 cut(s)	341
AlwI	GGATC	2 cut(s)	234, 429
AoxI	GGCC	2 cut(s)	3, 115
ApaLI	GTGCAC	1 cut(s)	341
ApeKI	GCWGC	2 cut(s)	171, 178
ApoI	RAATTY	1 cut(s)	404
Asp700I	GAANNNNTTC	1 cut(s)	197
AspS9I	GGNCC	1 cut(s)	355
AsuII	TTCGAA	1 cut(s)	191
AvaII	GGWCC	1 cut(s)	355
BaeGI	GKGCMC	1 cut(s)	345
BauI	CACGAG	1 cut(s)	320
Bbv12I	GWGCWC	1 cut(s)	345
BbvI	GCAGC	2 cut(s)	158, 190
BcoDI	GTCTC	1 cut(s)	149
BfuAI	ACCTGC	1 cut(s)	134
BisI	GCNGC	3 cut(s)	115, 172, 179
BlsI	GCNGC	3 cut(s)	116, 173, 180
Bme18I	GGWCC	1 cut(s)	355
BmgT120I	GGNCC	1 cut(s)	355
Bpu14I	TTCGAA	1 cut(s)	191
Bsa29I	ATCGAT	1 cut(s)	424
BsaJI	CCNNGG	1 cut(s)	262
Bsc4I	CCNNNNNNNGG	1 cut(s)	98
Bse1I	ACTGG	1 cut(s)	358
BseCI	ATCGAT	1 cut(s)	424
BseDI	CCNNGG	1 cut(s)	262
BseGI	GGATG	1 cut(s)	397
BseLI	CCNNNNNNNGG	1 cut(s)	98
BseNI	ACTGG	1 cut(s)	358
BseSI	GKGCMC	1 cut(s)	345
BseXI	GCAGC	2 cut(s)	158, 190
BseYI	CCCAGC	1 cut(s)	49
BshFI	GGCC	2 cut(s)	5, 117
BshVI	ATCGAT	1 cut(s)	424
BsiHKAI	GWGCWC	1 cut(s)	345
BsiSI	CCGG	1 cut(s)	6
BslI	CCNNNNNNNGG	1 cut(s)	98
BsmAI	GTCTC	1 cut(s)	149
BsnI	GGCC	2 cut(s)	5, 117
Bsp119I	TTCGAA	1 cut(s)	191
Bsp1286I	GDGCHC	1 cut(s)	345
Bsp143I	GATC	3 cut(s)	226, 421, 425
BspACI	CCGC	2 cut(s)	114, 176
BspANI	GGCC	2 cut(s)	5, 117
BspDI	ATCGAT	1 cut(s)	424
BspMI	ACCTGC	1 cut(s)	134
BspPI	GGATC	2 cut(s)	234, 429
BspT104I	TTCGAA	1 cut(s)	191
BsrI	ACTGG	1 cut(s)	358
BssECI	CCNNGG	1 cut(s)	262
BssMI	GATC	3 cut(s)	226, 421, 425
BssSI	CACGAG	1 cut(s)	320
Bst2BI	CACGAG	1 cut(s)	320
Bst4CI	ACNGT	1 cut(s)	275
Bst6I	CTCTTC	1 cut(s)	209
BstBI	TTCGAA	1 cut(s)	191
BstC8I	GCNNGC	2 cut(s)	176, 183
BstDSI	CCRYGG	1 cut(s)	262
BstEII	GGTNACC	1 cut(s)	86
BstF5I	GGATG	1 cut(s)	397
BstKTI	GATC	3 cut(s)	229, 424, 428
BstMAI	GTCTC	1 cut(s)	149
BstMBI	GATC	3 cut(s)	226, 421, 425
BstPI	GGTNACC	1 cut(s)	86
BstSLI	GKGCMC	1 cut(s)	345
BstV1I	GCAGC	2 cut(s)	158, 190
Bsu15I	ATCGAT	1 cut(s)	424
BsuRI	GGCC	2 cut(s)	5, 117
BsuTUI	ATCGAT	1 cut(s)	424
BtgI	CCRYGG	1 cut(s)	262
BtsCI	GGATG	1 cut(s)	397
BveI	ACCTGC	1 cut(s)	134
Cac8I	GCNNGC	2 cut(s)	176, 183
Cfr13I	GGNCC	1 cut(s)	355
ClaI	ATCGAT	1 cut(s)	424
Csp6I	GTAC	1 cut(s)	299
CviAII	CATG	3 cut(s)	119, 223, 247
CviJI	RGCY	6 cut(s)	5, 53, 117, 283, 367, 387
CviKI_1	RGCY	6 cut(s)	5, 53, 117, 283, 367, 387
CviQI	GTAC	1 cut(s)	299
DpnI	GATC	3 cut(s)	228, 423, 427
DpnII	GATC	3 cut(s)	226, 421, 425
EaeI	YGGCCR	2 cut(s)	3, 115
Eam1104I	CTCTTC	1 cut(s)	209
EarI	CTCTTC	1 cut(s)	209
Eco47I	GGWCC	1 cut(s)	355
Eco57I	CTGAAG	1 cut(s)	389
Eco91I	GGTNACC	1 cut(s)	86
EcoO65I	GGTNACC	1 cut(s)	86
EcoRI	GAATTC	1 cut(s)	404
FaeI	CATG	3 cut(s)	122, 226, 250
FatI	CATG	3 cut(s)	118, 222, 246
FauI	CCCGC	1 cut(s)	183
Fnu4HI	GCNGC	3 cut(s)	115, 172, 179
FokI	GGATG	1 cut(s)	404
Fsp4HI	GCNGC	3 cut(s)	115, 172, 179
GluI	GCNGC	3 cut(s)	115, 172, 179
GsaI	CCCAGC	1 cut(s)	53
HaeIII	GGCC	2 cut(s)	5, 117
HapII	CCGG	1 cut(s)	6
Hin1II	CATG	3 cut(s)	122, 226, 250
HpaII	CCGG	1 cut(s)	6
Hpy166II	GTNNAC	1 cut(s)	343
Hpy188I	TCNGA	2 cut(s)	40, 364
Hpy8I	GTNNAC	1 cut(s)	343
Hpy99I	CGWCG	1 cut(s)	292
HpyAV	CCTTC	4 cut(s)	77, 92, 187, 411
HpyCH4III	ACNGT	1 cut(s)	275
HpyCH4V	TGCA	3 cut(s)	129, 257, 343
Hsp92II	CATG	3 cut(s)	122, 226, 250
Kzo9I	GATC	3 cut(s)	226, 421, 425
LmnI	GCTCC	1 cut(s)	364
LpnPI	CCDG	5 cut(s)	19, 52, 63, 139, 371
Lsp1109I	GCAGC	2 cut(s)	158, 190
MaeIII	GTNAC	1 cut(s)	86
MalI	GATC	3 cut(s)	228, 423, 427
MboI	GATC	3 cut(s)	226, 421, 425
MboII	GAAGA	3 cut(s)	127, 196, 413
MfeI	CAATTG	1 cut(s)	93
MhlI	GDGCHC	1 cut(s)	345
MluCI	AATT	4 cut(s)	34, 93, 294, 404
MmeI	TCCRAC	2 cut(s)	342, 376
MnlI	CCTC	3 cut(s)	212, 230, 331
MroXI	GAANNNNTTC	1 cut(s)	197
MspI	CCGG	1 cut(s)	6
MunI	CAATTG	1 cut(s)	93
NdeII	GATC	3 cut(s)	226, 421, 425
NlaIII	CATG	3 cut(s)	122, 226, 250
NspV	TTCGAA	1 cut(s)	191
PdmI	GAANNNNTTC	1 cut(s)	197
PkrI	GCNGC	3 cut(s)	116, 173, 180
PspEI	GGTNACC	1 cut(s)	86
PspFI	CCCAGC	1 cut(s)	49
PspPI	GGNCC	1 cut(s)	355
RsaI	GTAC	1 cut(s)	300
RsaNI	GTAC	1 cut(s)	299
SatI	GCNGC	3 cut(s)	115, 172, 179
Sau3AI	GATC	3 cut(s)	226, 421, 425
Sau96I	GGNCC	1 cut(s)	355
SduI	GDGCHC	1 cut(s)	345
SetI	ASST	8 cut(s)	55, 88, 103, 128, 153, 342, 369, 381
SfuI	TTCGAA	1 cut(s)	191
SinI	GGWCC	1 cut(s)	355
Sse9I	AATT	4 cut(s)	34, 93, 294, 404
SsiI	CCGC	2 cut(s)	114, 176
TaaI	ACNGT	1 cut(s)	275
TaqI	TCGA	2 cut(s)	191, 424
TasI	AATT	4 cut(s)	34, 93, 294, 404
TauI	GCSGC	1 cut(s)	117
TseI	GCWGC	2 cut(s)	171, 178
TspDTI	ATGAA	3 cut(s)	135, 196, 293
VneI	GTGCAC	1 cut(s)	341
VpaK11BI	GGWCC	1 cut(s)	355
XapI	RAATTY	1 cut(s)	404
XmnI	GAANNNNTTC	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.