Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0010325

Physical Location & Seq

Genomic Coordinates Forward (+)

2359084 .. 2362351

Gene Structure 3268 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG036400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGCCGGAAGTAGAAGCATAGGCTCTGAGCCAATCCAAGATTCCTCAGACCCTAATTCAAAGAAAGCCAGGGGTTTAACCATTGAAGGGTACCCAGTTGAGGGTTTATCAATTGGAGGCCACGAAACCTGTGTAATCTTTCCATCTCTCAAGTTGTCATTTGATATTGGACGATGCCCACAACGTGCTATTGCCCAAGACTTCCTCTTCATCTCACATGCCCACATGGATCACATTGGAGGACTGCCTATGTATGTTGCAACTCGTGGGCTATACAGCATGAAGCCCCCAACTATCATTGTACCAAAATGTATAAAAGAAGTTGTTGAAGAACTCTTTGAGGTGCACAGAAAAATGGATCAATCGGAGCTGAAGCATAATCTGATTGGCTTGGATGCTGGAGAAGAATTCCATATGAGAAAGGATCTCAAAGTAAAAGCTTTTAGGACTTATCATAGAATACCAAGTCAGGGTTACGTAGTATACTCGGTAAAACATAAACTTAAGCAGGAGTATCTCGGCCTATCTGGGACTGAAATTAAAGAGTTGAAATTATCAGGCGTGGAGGTGTGTCTCGAAAATCTTATATACCATACTTTTGGCATCAGATTTAAGCTACCGGACTGCTCTTTTCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0031123 GO:0034414 GO:0034470 GO:0034641 GO:0034660 GO:0042779 GO:0042780 GO:0042781 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043628 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901360 GO:1905267

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Lactamase_B_2

Protein Analysis

212

Amino Acids

23.85

Weight (kDa)

8.22

Isoelectric Point (pI)

41.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Anti-Pycsar_Apyc1	PF23023	67 - 164	2.4e-08	Anti-Pycsar protein Apyc1
Lactamase_B_2	PF12706	67 - 162	6.2e-08	Beta-lactamase superfamily domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74700
fragaria_vesca	FvH4_5g15380 FvH4_5g15380 FvH4_5g15380 FvH4_5g15380
malus_domestica	MD06G1188900.v1.1
prunus_persica	Prupe.5G187500_v2.0.a1
pyrus_communis	pycom06g16770
rosa_chinensis	RchiOBHm_Chr7g0180691
rosa_laevigata	RLG00000005240
rosa_multiflora	Rmu_sc0007457.1_g000026 Rmu_sc0023372.1_g000013
rosa_roxburghii	Rroxscaffold_3G00272650
rosa_rugosa	Rorug06G0434900 Rorug06G0434900 Rorug06G0434900
rosa_samantha	Rh7AG036600 Rh7BG036400 Rh7CG038100 Rh7DG036600
rosa_wichuraiana	Rw7G003020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	90
AccB1I	GGYRCC	1 cut(s)	90
AccI	GTMKAC	1 cut(s)	483
AclWI	GGATC	3 cut(s)	237, 366, 432
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	407
AcuI	CTGAAG	1 cut(s)	392
AdeI	CACNNNGTG	1 cut(s)	185
AfaI	GTAC	2 cut(s)	92, 303
AfiI	CCNNNNNNNGG	4 cut(s)	87, 100, 101, 470
AflII	CTTAAG	1 cut(s)	503
AgsI	TTSAA	4 cut(s)	60, 86, 329, 550
AjnI	CCWGG	1 cut(s)	68
AjuI	GAANNNNNNNTTGG	2 cut(s)	25, 57
AluBI	AGCT	3 cut(s)	370, 440, 616
AluI	AGCT	3 cut(s)	370, 440, 616
Alw21I	GWGCWC	1 cut(s)	348
Alw26I	GTCTC	1 cut(s)	578
Alw44I	GTGCAC	1 cut(s)	344
AlwI	GGATC	3 cut(s)	237, 366, 432
AoxI	GGCC	3 cut(s)	3, 118, 520
ApaLI	GTGCAC	1 cut(s)	344
ApoI	RAATTY	1 cut(s)	407
Asp718I	GGTACC	1 cut(s)	90
BaeGI	GKGCMC	1 cut(s)	348
BanI	GGYRCC	1 cut(s)	90
BauI	CACGAG	1 cut(s)	264
Bbv12I	GWGCWC	1 cut(s)	348
BccI	CCATC	1 cut(s)	151
BciT130I	CCWGG	1 cut(s)	70
BcoDI	GTCTC	1 cut(s)	578
BfrI	CTTAAG	1 cut(s)	503
Bme1390I	CCNGG	1 cut(s)	70
BmiI	GGNNCC	1 cut(s)	92
BmrFI	CCNGG	1 cut(s)	70
BmrI	ACTGGG	1 cut(s)	89
BmsI	GCATC	3 cut(s)	164, 385, 612
BmuI	ACTGGG	1 cut(s)	89
BpmI	CTGGAG	1 cut(s)	420
BpuEI	CTTGAG	1 cut(s)	134
BsaAI	YACGTR	1 cut(s)	478
BsaJI	CCNNGG	1 cut(s)	69
BsaWI	WCCGGW	1 cut(s)	619
Bsc4I	CCNNNNNNNGG	4 cut(s)	87, 100, 101, 470
Bse1I	ACTGG	1 cut(s)	95
BseBI	CCWGG	1 cut(s)	70
BseDI	CCNNGG	1 cut(s)	69
BseGI	GGATG	1 cut(s)	400
BseLI	CCNNNNNNNGG	4 cut(s)	87, 100, 101, 470
BseMII	CTCAG	2 cut(s)	18, 60
BseNI	ACTGG	1 cut(s)	95
BseSI	GKGCMC	1 cut(s)	348
BshFI	GGCC	3 cut(s)	5, 120, 522
BshNI	GGYRCC	1 cut(s)	90
BsiHKAI	GWGCWC	1 cut(s)	348
BsiSI	CCGG	2 cut(s)	6, 620
BslFI	GGGAC	1 cut(s)	544
BslI	CCNNNNNNNGG	4 cut(s)	87, 100, 101, 470
BsmAI	GTCTC	1 cut(s)	578
BsmFI	GGGAC	1 cut(s)	544
BsnI	GGCC	3 cut(s)	5, 120, 522
Bsp1286I	GDGCHC	1 cut(s)	348
Bsp143I	GATC	3 cut(s)	229, 358, 424
BspANI	GGCC	3 cut(s)	5, 120, 522
BspCNI	CTCAG	2 cut(s)	19, 59
BspLI	GGNNCC	1 cut(s)	92
BspPI	GGATC	3 cut(s)	237, 366, 432
BspT107I	GGYRCC	1 cut(s)	90
BspTI	CTTAAG	1 cut(s)	503
BsrI	ACTGG	1 cut(s)	95
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	3 cut(s)	229, 358, 424
BssNAI	GTATAC	1 cut(s)	484
BssSI	CACGAG	1 cut(s)	264
Bst1107I	GTATAC	1 cut(s)	484
Bst2BI	CACGAG	1 cut(s)	264
Bst2UI	CCWGG	1 cut(s)	70
Bst6I	CTCTTC	1 cut(s)	212
BstAFI	CTTAAG	1 cut(s)	503
BstBAI	YACGTR	1 cut(s)	478
BstDEI	CTNAG	2 cut(s)	27, 46
BstF5I	GGATG	1 cut(s)	400
BstKTI	GATC	3 cut(s)	232, 361, 427
BstMAI	GTCTC	1 cut(s)	578
BstMBI	GATC	3 cut(s)	229, 358, 424
BstNI	CCWGG	1 cut(s)	70
BstNSI	RCATGY	1 cut(s)	221
BstSCI	CCNGG	1 cut(s)	68
BstSLI	GKGCMC	1 cut(s)	348
BstSNI	TACGTA	1 cut(s)	478
BstX2I	RGATCY	1 cut(s)	424
BstXI	CCANNNNNNTGG	1 cut(s)	599
BstYI	RGATCY	1 cut(s)	424
BstZ17I	GTATAC	1 cut(s)	484
BsuRI	GGCC	3 cut(s)	5, 120, 522
BtsCI	GGATG	1 cut(s)	400
Csp6I	GTAC	2 cut(s)	91, 302
CviAII	CATG	3 cut(s)	218, 226, 280
CviQI	GTAC	2 cut(s)	91, 302
DdeI	CTNAG	2 cut(s)	27, 46
DpnI	GATC	3 cut(s)	231, 360, 426
DpnII	GATC	3 cut(s)	229, 358, 424
DraIII	CACNNNGTG	1 cut(s)	185
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	212
EarI	CTCTTC	1 cut(s)	212
Eco105I	TACGTA	1 cut(s)	478
Eco57I	CTGAAG	1 cut(s)	392
EcoRI	GAATTC	1 cut(s)	407
EcoRII	CCWGG	1 cut(s)	68
FaeI	CATG	3 cut(s)	221, 229, 283
FaqI	GGGAC	1 cut(s)	544
FatI	CATG	3 cut(s)	217, 225, 279
FauNDI	CATATG	1 cut(s)	414
FblI	GTMKAC	1 cut(s)	483
FokI	GGATG	1 cut(s)	407
GsuI	CTGGAG	1 cut(s)	420
HaeIII	GGCC	3 cut(s)	5, 120, 522
HapII	CCGG	2 cut(s)	6, 620
Hin1II	CATG	3 cut(s)	221, 229, 283
HindIII	AAGCTT	1 cut(s)	438
HinfI	GANTC	1 cut(s)	41
HpaII	CCGG	2 cut(s)	6, 620
Hpy166II	GTNNAC	2 cut(s)	346, 484
Hpy188I	TCNGA	5 cut(s)	28, 49, 367, 384, 608
Hpy188III	TCNNGA	1 cut(s)	575
Hpy8I	GTNNAC	2 cut(s)	346, 484
HpyAV	CCTTC	1 cut(s)	80
HpyCH4IV	ACGT	2 cut(s)	184, 477
HpyCH4V	TGCA	2 cut(s)	260, 346
HpyF3I	CTNAG	2 cut(s)	27, 46
HpySE526I	ACGT	2 cut(s)	184, 477
Hsp92II	CATG	3 cut(s)	221, 229, 283
KpnI	GGTACC	1 cut(s)	94
Kzo9I	GATC	3 cut(s)	229, 358, 424
LmnI	GCTCC	1 cut(s)	367
LweI	GCATC	3 cut(s)	164, 385, 612
MaeII	ACGT	2 cut(s)	184, 477
MaeIII	GTNAC	1 cut(s)	473
MalI	GATC	3 cut(s)	231, 360, 426
MboI	GATC	3 cut(s)	229, 358, 424
MboII	GAAGA	3 cut(s)	199, 341, 416
MfeI	CAATTG	1 cut(s)	111
MflI	RGATCY	1 cut(s)	424
MhlI	GDGCHC	1 cut(s)	348
MluCI	AATT	5 cut(s)	55, 111, 407, 537, 551
MnlI	CCTC	7 cut(s)	55, 94, 110, 215, 233, 334, 559
MseI	TTAA	4 cut(s)	77, 504, 540, 612
MspCI	CTTAAG	1 cut(s)	503
MspI	CCGG	2 cut(s)	6, 620
MspR9I	CCNGG	1 cut(s)	70
MunI	CAATTG	1 cut(s)	111
MvaI	CCWGG	1 cut(s)	70
NdeI	CATATG	1 cut(s)	414
NdeII	GATC	3 cut(s)	229, 358, 424
NlaIII	CATG	3 cut(s)	221, 229, 283
NlaIV	GGNNCC	1 cut(s)	92
NmeAIII	GCCGAG	1 cut(s)	498
NspI	RCATGY	1 cut(s)	221
PfeI	GAWTC	1 cut(s)	41
Ppu21I	YACGTR	1 cut(s)	478
Psp6I	CCWGG	1 cut(s)	68
PspGI	CCWGG	1 cut(s)	68
PspN4I	GGNNCC	1 cut(s)	92
PsuI	RGATCY	1 cut(s)	424
RsaI	GTAC	2 cut(s)	92, 303
RsaNI	GTAC	2 cut(s)	91, 302
SaqAI	TTAA	4 cut(s)	77, 504, 540, 612
Sau3AI	GATC	3 cut(s)	229, 358, 424
ScrFI	CCNGG	1 cut(s)	70
SduI	GDGCHC	1 cut(s)	348
SetI	ASST	8 cut(s)	131, 187, 345, 372, 442, 480, 570, 618
SfaNI	GCATC	3 cut(s)	164, 385, 612
SmlI	CTYRAG	2 cut(s)	149, 503
SmoI	CTYRAG	2 cut(s)	149, 503
SnaBI	TACGTA	1 cut(s)	478
Sse9I	AATT	5 cut(s)	55, 111, 407, 537, 551
StyD4I	CCNGG	1 cut(s)	68
TaiI	ACGT	2 cut(s)	187, 480
TaqI	TCGA	1 cut(s)	576
TasI	AATT	5 cut(s)	55, 111, 407, 537, 551
TfiI	GAWTC	1 cut(s)	41
Tru1I	TTAA	4 cut(s)	77, 504, 540, 612
Tru9I	TTAA	4 cut(s)	77, 504, 540, 612
TspDTI	ATGAA	2 cut(s)	199, 296
Vha464I	CTTAAG	1 cut(s)	503
VneI	GTGCAC	1 cut(s)	344
XapI	RAATTY	1 cut(s)	407
XceI	RCATGY	1 cut(s)	221
XmiI	GTMKAC	1 cut(s)	483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.