FvH4_5g15500

Protein of unknown function (DUF1118)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0014162
Physical Location & Seq
Forward (+)
8750909 .. 8751958
1050 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g15500.t1

Sequence Viewer

Length: 609 bp
ATGGCAGTGTTCTCTGCAACTGCTCCCTCAGCTACTTGCATCAATGGAAATCTCACCCACAAAAACACCAACAACAACTTCCTTTCCTCTAAACACTTCTCCGATTACATCTCACCGGCCCGGTCGAGAACCTCCACGATCGTTAACATGGCACCCAAGAAGAAGGTGAACAAAATCGACGGCGGGTGGAAGAAGCAGTGGTTTGGAGCCGGAATATTCTACGAAGGGTCGGAAGACATAGAAGTGGACGTGTTCAAGAAGCTCGAGAAGCGCAAGGTCCTCAGCAACGTCGAAAAAGCTGGGCTTTTGACCAAGGCCGAGGAACTTGGGCTGACGCTCTCGTCCATTGAGAAATTGGGCCTGCTTTCAAAGGCTGAGGATTTGGGCCTGCTCAGCCTGCTTGAGACGGTCGCGGGTTACTCTCCCGCCGCTTTGGCCTCCGCGGCACTGCCAGTTCTGGTTGCGGCGCTGGCGGCGATAGTGTTGATACCGGATGACTCGACGGCATTGGTGGTGGTGCAGTTTGTGGTGGCTAGTGTGCTTGGGGCTGGGGCTGTGGGTTTGTTAGTGGGCTCGGTTGTCTTGGATGGTTTGCAAGAAGCTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1118

Protein Analysis

203

Amino Acids

21.14

Weight (kDa)

6.14

Isoelectric Point (pI)

34.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1118 PF06549 87 - 201 5.1e-47 Protein of unknown function (DUF1118)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014162)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74730
fragaria_vesca FvH4_5g15500
malus_domestica MD06G1188100.v1.1 MD14G1194200.v1.1
prunus_persica Prupe.5G186300_v2.0.a1
pyrus_communis pycom06g16690 pycom14g16160
rosa_chinensis RchiOBHm_Chr7g0180591
rosa_laevigata RLG00000005252
rosa_multiflora Rmu_sc0005690.1_g000019
rosa_roxburghii Rroxscaffold_3G00272760
rosa_rugosa Rorug06G0434000
rosa_samantha Rh7AG035400 Rh7BG035300 Rh7CG037000 Rh7DG035600
rosa_wichuraiana Rw7G002910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 340
AccB1I GGYRCC 1 cut(s) 151
AccII CGCG 2 cut(s) 413, 443
AciI CCGC 8 cut(s) 183, 413, 426, 429, 441, 443, 464, 473
AflIII ACRYGT 1 cut(s) 249
AgsI TTSAA 2 cut(s) 256, 369
AjiI CACGTC 1 cut(s) 250
AjuI GAANNNNNNNTTGG 2 cut(s) 62, 94
AluBI AGCT 4 cut(s) 32, 262, 299, 602
AluI AGCT 4 cut(s) 32, 262, 299, 602
Alw26I GTCTC 1 cut(s) 398
Ama87I CYCGRG 1 cut(s) 263
AoxI GGCC 5 cut(s) 117, 315, 358, 385, 435
AspLEI GCGC 2 cut(s) 273, 469
AspS9I GGNCC 4 cut(s) 118, 277, 358, 385
AsuC2I CCSGG 1 cut(s) 121
AsuHPI GGTGA 3 cut(s) 46, 105, 178
AvaI CYCGRG 1 cut(s) 263
AvaII GGWCC 1 cut(s) 277
BanI GGYRCC 1 cut(s) 151
BanII GRGCYC 1 cut(s) 575
BbsI GAAGAC 1 cut(s) 240
BbvCI CCTCAGC 3 cut(s) 28, 281, 375
BccI CCATC 1 cut(s) 581
BceAI ACGGC 2 cut(s) 196, 519
BcnI CCSGG 1 cut(s) 121
BcoDI GTCTC 1 cut(s) 398
BfaI CTAG 1 cut(s) 534
BfoI RGCGCY 1 cut(s) 470
BglI GCCNNNNNGGC 2 cut(s) 434, 443
BisI GCNGC 4 cut(s) 429, 444, 465, 474
BlpI GCTNAGC 1 cut(s) 392
BlsI GCNGC 4 cut(s) 430, 445, 466, 475
Bme1390I CCNGG 1 cut(s) 121
Bme18I GGWCC 1 cut(s) 277
BmeT110I CYCGRG 1 cut(s) 263
BmgBI CACGTC 1 cut(s) 250
BmgT120I GGNCC 4 cut(s) 118, 277, 358, 385
BmiI GGNNCC 2 cut(s) 153, 208
BmrFI CCNGG 1 cut(s) 121
BmsI GCATC 1 cut(s) 48
BpiI GAAGAC 1 cut(s) 240
Bpu10I CCTNAGC 3 cut(s) 28, 281, 375
Bpu1102I GCTNAGC 1 cut(s) 392
BpuEI CTTGAG 1 cut(s) 422
BpuMI CCSGG 1 cut(s) 121
BsaJI CCNNGG 3 cut(s) 312, 318, 441
BsaWI WCCGGW 1 cut(s) 490
Bse118I RCCGGY 1 cut(s) 115
Bse1I ACTGG 1 cut(s) 452
BseDI CCNNGG 3 cut(s) 312, 318, 441
BseGI GGATG 2 cut(s) 499, 592
BseMII CTCAG 4 cut(s) 42, 295, 366, 406
BseNI ACTGG 1 cut(s) 452
BseYI CCCAGC 2 cut(s) 299, 548
BsgI GTGCAG 1 cut(s) 539
Bsh1236I CGCG 2 cut(s) 413, 443
Bsh1285I CGRYCG 3 cut(s) 125, 141, 411
BshFI GGCC 5 cut(s) 119, 317, 360, 387, 437
BshNI GGYRCC 1 cut(s) 151
BsiEI CGRYCG 3 cut(s) 125, 141, 411
BsiHKCI CYCGRG 1 cut(s) 263
BsiSI CCGG 4 cut(s) 116, 121, 210, 491
BsmAI GTCTC 1 cut(s) 398
BsmBI CGTCTC 1 cut(s) 398
BsnI GGCC 5 cut(s) 119, 317, 360, 387, 437
BsoBI CYCGRG 1 cut(s) 263
Bsp1286I GDGCHC 1 cut(s) 575
Bsp143I GATC 1 cut(s) 138
Bsp1720I GCTNAGC 1 cut(s) 392
BspACI CCGC 8 cut(s) 183, 413, 426, 429, 441, 443, 464, 473
BspANI GGCC 5 cut(s) 119, 317, 360, 387, 437
BspCNI CTCAG 4 cut(s) 41, 294, 367, 405
BspFNI CGCG 2 cut(s) 413, 443
BspLI GGNNCC 2 cut(s) 153, 208
BspT107I GGYRCC 1 cut(s) 151
BsrFI RCCGGY 1 cut(s) 115
BsrI ACTGG 1 cut(s) 452
BssAI RCCGGY 1 cut(s) 115
BssECI CCNNGG 3 cut(s) 312, 318, 441
BssMI GATC 1 cut(s) 138
BssT1I CCWWGG 1 cut(s) 312
Bst4CI ACNGT 1 cut(s) 409
BstC8I GCNNGC 4 cut(s) 362, 389, 398, 471
BstDEI CTNAG 4 cut(s) 28, 281, 375, 392
BstDSI CCRYGG 1 cut(s) 441
BstF5I GGATG 2 cut(s) 499, 592
BstFNI CGCG 2 cut(s) 413, 443
BstH2I RGCGCY 1 cut(s) 470
BstHHI GCGC 2 cut(s) 273, 469
BstKTI GATC 1 cut(s) 141
BstMAI GTCTC 1 cut(s) 398
BstMBI GATC 1 cut(s) 138
BstMCI CGRYCG 3 cut(s) 125, 141, 411
BstMWI GCNNNNNNNGC 8 cut(s) 29, 268, 393, 397, 434, 443, 470, 473
BstSCI CCNGG 1 cut(s) 119
BstUI CGCG 2 cut(s) 413, 443
BstV2I GAAGAC 1 cut(s) 240
BsuRI GGCC 5 cut(s) 119, 317, 360, 387, 437
BtgI CCRYGG 1 cut(s) 441
BtrI CACGTC 1 cut(s) 250
BtsCI GGATG 2 cut(s) 499, 592
BtsI GCAGTG 3 cut(s) 12, 203, 446
BtsIMutI CAGTG 3 cut(s) 12, 203, 446
Cac8I GCNNGC 4 cut(s) 362, 389, 398, 471
CfoI GCGC 2 cut(s) 273, 469
Cfr10I RCCGGY 1 cut(s) 115
Cfr13I GGNCC 4 cut(s) 118, 277, 358, 385
Cfr42I CCGCGG 1 cut(s) 444
CseI GACGC 1 cut(s) 343
CviAII CATG 1 cut(s) 148
DdeI CTNAG 4 cut(s) 28, 281, 375, 392
DpnI GATC 1 cut(s) 140
DpnII GATC 1 cut(s) 138
DrdI GACNNNNNNGTC 1 cut(s) 340
DseDI GACNNNNNNGTC 1 cut(s) 340
Eco130I CCWWGG 1 cut(s) 312
Eco24I GRGCYC 1 cut(s) 575
Eco47I GGWCC 1 cut(s) 277
Eco88I CYCGRG 1 cut(s) 263
EcoO109I RGGNCCY 1 cut(s) 277
EcoT14I CCWWGG 1 cut(s) 312
EcoT38I GRGCYC 1 cut(s) 575
ErhI CCWWGG 1 cut(s) 312
Esp3I CGTCTC 1 cut(s) 398
FaeI CATG 1 cut(s) 151
FaiI YATR 2 cut(s) 149, 239
FalI AAGNNNNNCTT 2 cut(s) 288, 320
FatI CATG 1 cut(s) 147
FauI CCCGC 3 cut(s) 176, 406, 433
Fnu4HI GCNGC 4 cut(s) 429, 444, 465, 474
FokI GGATG 2 cut(s) 506, 599
FriOI GRGCYC 1 cut(s) 575
Fsp4HI GCNGC 4 cut(s) 429, 444, 465, 474
FspBI CTAG 1 cut(s) 534
GlaI GCGC 2 cut(s) 272, 468
GluI GCNGC 4 cut(s) 429, 444, 465, 474
GsaI CCCAGC 2 cut(s) 303, 552
HaeII RGCGCY 1 cut(s) 470
HaeIII GGCC 5 cut(s) 119, 317, 360, 387, 437
HapII CCGG 4 cut(s) 116, 121, 210, 491
HgaI GACGC 1 cut(s) 343
HhaI GCGC 2 cut(s) 273, 469
Hin1II CATG 1 cut(s) 151
Hin6I GCGC 2 cut(s) 271, 467
HinP1I GCGC 2 cut(s) 271, 467
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
HinfI GANTC 1 cut(s) 497
HpaI GTTAAC 1 cut(s) 145
HpaII CCGG 4 cut(s) 116, 121, 210, 491
HphI GGTGA 3 cut(s) 46, 105, 178
Hpy166II GTNNAC 3 cut(s) 145, 169, 247
Hpy188I TCNGA 2 cut(s) 103, 232
Hpy188III TCNNGA 3 cut(s) 126, 256, 265
Hpy8I GTNNAC 3 cut(s) 145, 169, 247
Hpy99I CGWCG 3 cut(s) 182, 293, 505
HpyAV CCTTC 2 cut(s) 157, 218
HpyCH4III ACNGT 1 cut(s) 409
HpyCH4IV ACGT 2 cut(s) 249, 288
HpyCH4V TGCA 4 cut(s) 17, 39, 520, 595
HpyF10VI GCNNNNNNNGC 8 cut(s) 29, 268, 393, 397, 434, 443, 470, 473
HpyF3I CTNAG 4 cut(s) 28, 281, 375, 392
HpySE526I ACGT 2 cut(s) 249, 288
Hsp92II CATG 1 cut(s) 151
HspAI GCGC 2 cut(s) 271, 467
KspAI GTTAAC 1 cut(s) 145
KspI CCGCGG 1 cut(s) 444
Kzo9I GATC 1 cut(s) 138
LmnI GCTCC 2 cut(s) 28, 206
LweI GCATC 1 cut(s) 48
MaeI CTAG 1 cut(s) 534
MaeII ACGT 2 cut(s) 249, 288
MaeIII GTNAC 1 cut(s) 416
MalI GATC 1 cut(s) 140
MboI GATC 1 cut(s) 138
MboII GAAGA 3 cut(s) 172, 202, 245
MhlI GDGCHC 1 cut(s) 575
MluCI AATT 1 cut(s) 353
MlyI GAGTC 1 cut(s) 491
MmeI TCCRAC 1 cut(s) 210
MnlI CCTC 7 cut(s) 37, 97, 142, 290, 313, 370, 448
MseI TTAA 1 cut(s) 144
MslI CAYNNNNRTG 1 cut(s) 242
MspA1I CMGCKG 1 cut(s) 443
MspI CCGG 4 cut(s) 116, 121, 210, 491
MspR9I CCNGG 1 cut(s) 121
MvnI CGCG 2 cut(s) 413, 443
MwoI GCNNNNNNNGC 8 cut(s) 29, 268, 393, 397, 434, 443, 470, 473
NciI CCSGG 1 cut(s) 121
NdeII GATC 1 cut(s) 138
NlaIII CATG 1 cut(s) 151
NlaIV GGNNCC 2 cut(s) 153, 208
NmeAIII GCCGAG 1 cut(s) 343
PaeR7I CTCGAG 1 cut(s) 263
PkrI GCNGC 4 cut(s) 430, 445, 466, 475
Ple19I CGATCG 1 cut(s) 141
PleI GAGTC 1 cut(s) 491
PpsI GAGTC 1 cut(s) 491
PpuMI RGGWCCY 1 cut(s) 277
Psp5II RGGWCCY 1 cut(s) 277
PspFI CCCAGC 2 cut(s) 299, 548
PspN4I GGNNCC 2 cut(s) 153, 208
PspPI GGNCC 4 cut(s) 118, 277, 358, 385
PspPPI RGGWCCY 1 cut(s) 277
PvuI CGATCG 1 cut(s) 141
RseI CAYNNNNRTG 1 cut(s) 242
SacII CCGCGG 1 cut(s) 444
SaqAI TTAA 1 cut(s) 144
SatI GCNGC 4 cut(s) 429, 444, 465, 474
Sau3AI GATC 1 cut(s) 138
Sau96I GGNCC 4 cut(s) 118, 277, 358, 385
SchI GAGTC 1 cut(s) 491
ScrFI CCNGG 1 cut(s) 121
SduI GDGCHC 1 cut(s) 575
SetI ASST 9 cut(s) 34, 134, 168, 252, 264, 279, 291, 301, 604
SfaNI GCATC 1 cut(s) 48
Sfr274I CTCGAG 1 cut(s) 263
Sfr303I CCGCGG 1 cut(s) 444
SgrBI CCGCGG 1 cut(s) 444
SinI GGWCC 1 cut(s) 277
SlaI CTCGAG 1 cut(s) 263
SmiMI CAYNNNNRTG 1 cut(s) 242
SmlI CTYRAG 2 cut(s) 263, 401
SmoI CTYRAG 2 cut(s) 263, 401
Sse9I AATT 1 cut(s) 353
SsiI CCGC 8 cut(s) 183, 413, 426, 429, 441, 443, 464, 473
SspI AATATT 1 cut(s) 216
SspMI CTAG 1 cut(s) 534
StyD4I CCNGG 1 cut(s) 119
StyI CCWWGG 1 cut(s) 312
TaaI ACNGT 1 cut(s) 409
TaiI ACGT 2 cut(s) 252, 291
TaqI TCGA 5 cut(s) 125, 177, 264, 291, 500
TasI AATT 1 cut(s) 353
TauI GCSGC 4 cut(s) 431, 446, 467, 476
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TscAI CASTG 3 cut(s) 12, 203, 453
TspRI CASTG 3 cut(s) 12, 203, 453
VpaK11BI GGWCC 1 cut(s) 277
XcmI CCANNNNNNNNNTGG 1 cut(s) 352
XhoI CTCGAG 1 cut(s) 263
XspI CTAG 1 cut(s) 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.