Rh7BG035300

Protein of unknown function (DUF1118)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0014162
Physical Location & Seq
Reverse (-)
2318158 .. 2321640
3483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG035300.1

Sequence Viewer

Length: 564 bp
ATGCGGTTGCGGTTTTCAATATTGAACAACCGAATGAAGCGGTTTGGTTGCGGTTTTGGCACAACACCGATCCGCACCGAACCGCGCCCACCCCTAGTTAACATGGCACCCAAGAAGAAGGTGAACAAAATCGACGGAGGGTGGAAGAAGCAGTGGTTCGGAGCCGGAATATTCTACGAAGGGTCGGAAGACATAGAAGTGGACGTGTTCAAGAAGCTCGAGAAGCGCAAGGTATTGAGCAACGTCGAAAAAGCTGGGCTTCTGACCAAGGCCGAGGACCTTGGGCTGACACTCTCGTCCATTGAGAAATTGGGCCTGCTCTCAAAGGCCGAGGGATTGGGCCTGCTCAGCCTGCTTGAGACAGTCGCAGGCTACTCTCCCGCCGCTTTGGCCTCCGCGGCACTGCCGGTTCTGGTTGCGGCGCTGGCGGTGATAGTGTTGATACCGGATGACTCGGCGGCGTTGGTGGTGGTGCAGTATGTGGTGGCTGCTGTGCTTGGGGCTGGGGCTGTGGGTTTGTTAGTGGGCTCGGTTGTCTTGGATGGCTTGCAAGAAGCTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1118

Protein Analysis

187

Amino Acids

19.76

Weight (kDa)

8.97

Isoelectric Point (pI)

34.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1118 PF06549 72 - 186 7.9e-46 Protein of unknown function (DUF1118)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014162)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74730
fragaria_vesca FvH4_5g15500
malus_domestica MD06G1188100.v1.1 MD14G1194200.v1.1
prunus_persica Prupe.5G186300_v2.0.a1
pyrus_communis pycom06g16690 pycom14g16160
rosa_chinensis RchiOBHm_Chr7g0180591
rosa_laevigata RLG00000005252
rosa_multiflora Rmu_sc0005690.1_g000019
rosa_roxburghii Rroxscaffold_3G00272760
rosa_rugosa Rorug06G0434000
rosa_samantha Rh7AG035400 Rh7BG035300 Rh7CG037000 Rh7DG035600
rosa_wichuraiana Rw7G002910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 295
AccB1I GGYRCC 1 cut(s) 106
AccII CGCG 2 cut(s) 85, 398
AclWI GGATC 1 cut(s) 64
AflIII ACRYGT 1 cut(s) 204
AgsI TTSAA 3 cut(s) 18, 25, 211
AjiI CACGTC 1 cut(s) 205
AluBI AGCT 3 cut(s) 217, 254, 557
AluI AGCT 3 cut(s) 217, 254, 557
Alw26I GTCTC 1 cut(s) 353
AlwI GGATC 1 cut(s) 64
Ama87I CYCGRG 1 cut(s) 218
AoxI GGCC 5 cut(s) 270, 313, 327, 340, 390
ApeKI GCWGC 1 cut(s) 488
AspLEI GCGC 3 cut(s) 87, 228, 424
AspS9I GGNCC 3 cut(s) 277, 313, 340
AsuHPI GGTGA 2 cut(s) 133, 442
AvaI CYCGRG 1 cut(s) 218
AvaII GGWCC 1 cut(s) 277
BanI GGYRCC 1 cut(s) 106
BanII GRGCYC 1 cut(s) 530
BbsI GAAGAC 1 cut(s) 195
BbvI GCAGC 1 cut(s) 475
BccI CCATC 1 cut(s) 536
BcoDI GTCTC 1 cut(s) 353
BfaI CTAG 1 cut(s) 95
BfoI RGCGCY 1 cut(s) 425
BglI GCCNNNNNGGC 2 cut(s) 389, 398
BisI GCNGC 5 cut(s) 384, 399, 420, 459, 489
BlpI GCTNAGC 1 cut(s) 347
BlsI GCNGC 5 cut(s) 385, 400, 421, 460, 490
Bme18I GGWCC 1 cut(s) 277
BmeT110I CYCGRG 1 cut(s) 218
BmgBI CACGTC 1 cut(s) 205
BmgT120I GGNCC 3 cut(s) 277, 313, 340
BmiI GGNNCC 2 cut(s) 108, 163
BpiI GAAGAC 1 cut(s) 195
Bpu1102I GCTNAGC 1 cut(s) 347
BpuEI CTTGAG 1 cut(s) 377
BsaJI CCNNGG 5 cut(s) 267, 273, 280, 330, 396
BsaWI WCCGGW 1 cut(s) 445
Bse118I RCCGGY 1 cut(s) 406
BseDI CCNNGG 5 cut(s) 267, 273, 280, 330, 396
BseGI GGATG 2 cut(s) 454, 547
BseMII CTCAG 1 cut(s) 361
BseXI GCAGC 1 cut(s) 475
BseYI CCCAGC 2 cut(s) 254, 503
BsgI GTGCAG 1 cut(s) 494
Bsh1236I CGCG 2 cut(s) 85, 398
BshFI GGCC 5 cut(s) 272, 315, 329, 342, 392
BshNI GGYRCC 1 cut(s) 106
BsiHKCI CYCGRG 1 cut(s) 218
BsiSI CCGG 3 cut(s) 165, 407, 446
BsmAI GTCTC 1 cut(s) 353
BsnI GGCC 5 cut(s) 272, 315, 329, 342, 392
BsoBI CYCGRG 1 cut(s) 218
Bsp1286I GDGCHC 1 cut(s) 530
Bsp143I GATC 1 cut(s) 69
Bsp1720I GCTNAGC 1 cut(s) 347
BspANI GGCC 5 cut(s) 272, 315, 329, 342, 392
BspCNI CTCAG 1 cut(s) 360
BspFNI CGCG 2 cut(s) 85, 398
BspLI GGNNCC 2 cut(s) 108, 163
BspPI GGATC 1 cut(s) 64
BspT107I GGYRCC 1 cut(s) 106
BsrFI RCCGGY 1 cut(s) 406
BssAI RCCGGY 1 cut(s) 406
BssECI CCNNGG 5 cut(s) 267, 273, 280, 330, 396
BssMI GATC 1 cut(s) 69
BssT1I CCWWGG 2 cut(s) 267, 280
Bst4CI ACNGT 1 cut(s) 364
BstC8I GCNNGC 6 cut(s) 317, 344, 353, 370, 426, 548
BstDEI CTNAG 1 cut(s) 347
BstDSI CCRYGG 1 cut(s) 396
BstF5I GGATG 2 cut(s) 454, 547
BstFNI CGCG 2 cut(s) 85, 398
BstH2I RGCGCY 1 cut(s) 425
BstHHI GCGC 3 cut(s) 87, 228, 424
BstKTI GATC 1 cut(s) 72
BstMAI GTCTC 1 cut(s) 353
BstMBI GATC 1 cut(s) 69
BstMWI GCNNNNNNNGC 7 cut(s) 57, 223, 348, 352, 389, 398, 425
BstUI CGCG 2 cut(s) 85, 398
BstV1I GCAGC 1 cut(s) 475
BstV2I GAAGAC 1 cut(s) 195
BsuRI GGCC 5 cut(s) 272, 315, 329, 342, 392
BtgI CCRYGG 1 cut(s) 396
BtrI CACGTC 1 cut(s) 205
BtsCI GGATG 2 cut(s) 454, 547
BtsI GCAGTG 2 cut(s) 158, 401
BtsIMutI CAGTG 2 cut(s) 158, 401
Cac8I GCNNGC 6 cut(s) 317, 344, 353, 370, 426, 548
CfoI GCGC 3 cut(s) 87, 228, 424
Cfr10I RCCGGY 1 cut(s) 406
Cfr13I GGNCC 3 cut(s) 277, 313, 340
Cfr42I CCGCGG 1 cut(s) 399
CviAII CATG 1 cut(s) 103
DdeI CTNAG 1 cut(s) 347
DpnI GATC 1 cut(s) 71
DpnII GATC 1 cut(s) 69
DrdI GACNNNNNNGTC 1 cut(s) 295
DseDI GACNNNNNNGTC 1 cut(s) 295
Eco130I CCWWGG 2 cut(s) 267, 280
Eco24I GRGCYC 1 cut(s) 530
Eco47I GGWCC 1 cut(s) 277
Eco88I CYCGRG 1 cut(s) 218
EcoO109I RGGNCCY 1 cut(s) 277
EcoT14I CCWWGG 2 cut(s) 267, 280
EcoT38I GRGCYC 1 cut(s) 530
ErhI CCWWGG 2 cut(s) 267, 280
FaeI CATG 1 cut(s) 106
FaiI YATR 3 cut(s) 104, 194, 480
FalI AAGNNNNNCTT 2 cut(s) 243, 275
FatI CATG 1 cut(s) 102
FauI CCCGC 1 cut(s) 388
Fnu4HI GCNGC 5 cut(s) 384, 399, 420, 459, 489
FokI GGATG 2 cut(s) 461, 554
FriOI GRGCYC 1 cut(s) 530
Fsp4HI GCNGC 5 cut(s) 384, 399, 420, 459, 489
FspBI CTAG 1 cut(s) 95
GlaI GCGC 3 cut(s) 86, 227, 423
GluI GCNGC 5 cut(s) 384, 399, 420, 459, 489
GsaI CCCAGC 2 cut(s) 258, 507
HaeII RGCGCY 1 cut(s) 425
HaeIII GGCC 5 cut(s) 272, 315, 329, 342, 392
HapII CCGG 3 cut(s) 165, 407, 446
HhaI GCGC 3 cut(s) 87, 228, 424
Hin1II CATG 1 cut(s) 106
Hin6I GCGC 3 cut(s) 85, 226, 422
HinP1I GCGC 3 cut(s) 85, 226, 422
HincII GTYRAC 1 cut(s) 100
HindII GTYRAC 1 cut(s) 100
HinfI GANTC 1 cut(s) 452
HpaI GTTAAC 1 cut(s) 100
HpaII CCGG 3 cut(s) 165, 407, 446
HphI GGTGA 2 cut(s) 133, 442
Hpy166II GTNNAC 3 cut(s) 100, 124, 202
Hpy188I TCNGA 3 cut(s) 161, 187, 264
Hpy188III TCNNGA 2 cut(s) 211, 220
Hpy8I GTNNAC 3 cut(s) 100, 124, 202
Hpy99I CGWCG 2 cut(s) 137, 248
HpyAV CCTTC 2 cut(s) 112, 173
HpyCH4III ACNGT 1 cut(s) 364
HpyCH4IV ACGT 2 cut(s) 204, 243
HpyCH4V TGCA 2 cut(s) 475, 550
HpyF10VI GCNNNNNNNGC 7 cut(s) 57, 223, 348, 352, 389, 398, 425
HpyF3I CTNAG 1 cut(s) 347
HpySE526I ACGT 2 cut(s) 204, 243
Hsp92II CATG 1 cut(s) 106
HspAI GCGC 3 cut(s) 85, 226, 422
KspAI GTTAAC 1 cut(s) 100
KspI CCGCGG 1 cut(s) 399
Kzo9I GATC 1 cut(s) 69
LmnI GCTCC 1 cut(s) 161
Lsp1109I GCAGC 1 cut(s) 475
MaeI CTAG 1 cut(s) 95
MaeII ACGT 2 cut(s) 204, 243
MalI GATC 1 cut(s) 71
MboI GATC 1 cut(s) 69
MboII GAAGA 3 cut(s) 127, 157, 200
MhlI GDGCHC 1 cut(s) 530
MluCI AATT 1 cut(s) 308
MlyI GAGTC 1 cut(s) 446
MmeI TCCRAC 1 cut(s) 165
MnlI CCTC 4 cut(s) 131, 268, 325, 403
MseI TTAA 1 cut(s) 99
MslI CAYNNNNRTG 1 cut(s) 197
MspA1I CMGCKG 1 cut(s) 398
MspI CCGG 3 cut(s) 165, 407, 446
MvnI CGCG 2 cut(s) 85, 398
MwoI GCNNNNNNNGC 7 cut(s) 57, 223, 348, 352, 389, 398, 425
NdeII GATC 1 cut(s) 69
NlaIII CATG 1 cut(s) 106
NlaIV GGNNCC 2 cut(s) 108, 163
NmeAIII GCCGAG 3 cut(s) 298, 355, 434
PaeR7I CTCGAG 1 cut(s) 218
PkrI GCNGC 5 cut(s) 385, 400, 421, 460, 490
PleI GAGTC 1 cut(s) 446
PpsI GAGTC 1 cut(s) 446
PpuMI RGGWCCY 1 cut(s) 277
Psp5II RGGWCCY 1 cut(s) 277
PspFI CCCAGC 2 cut(s) 254, 503
PspN4I GGNNCC 2 cut(s) 108, 163
PspPI GGNCC 3 cut(s) 277, 313, 340
PspPPI RGGWCCY 1 cut(s) 277
RseI CAYNNNNRTG 1 cut(s) 197
SacII CCGCGG 1 cut(s) 399
SaqAI TTAA 1 cut(s) 99
SatI GCNGC 5 cut(s) 384, 399, 420, 459, 489
Sau3AI GATC 1 cut(s) 69
Sau96I GGNCC 3 cut(s) 277, 313, 340
SchI GAGTC 1 cut(s) 446
SduI GDGCHC 1 cut(s) 530
SetI ASST 8 cut(s) 123, 207, 219, 234, 246, 256, 282, 559
Sfr274I CTCGAG 1 cut(s) 218
Sfr303I CCGCGG 1 cut(s) 399
SgrBI CCGCGG 1 cut(s) 399
SinI GGWCC 1 cut(s) 277
SlaI CTCGAG 1 cut(s) 218
SmiMI CAYNNNNRTG 1 cut(s) 197
SmlI CTYRAG 2 cut(s) 218, 356
SmoI CTYRAG 2 cut(s) 218, 356
Sse9I AATT 1 cut(s) 308
SspI AATATT 2 cut(s) 21, 171
SspMI CTAG 1 cut(s) 95
StyI CCWWGG 2 cut(s) 267, 280
TaaI ACNGT 1 cut(s) 364
TaiI ACGT 2 cut(s) 207, 246
TaqI TCGA 3 cut(s) 132, 219, 246
TasI AATT 1 cut(s) 308
TauI GCSGC 4 cut(s) 386, 401, 422, 461
Tru1I TTAA 1 cut(s) 99
Tru9I TTAA 1 cut(s) 99
TscAI CASTG 2 cut(s) 158, 408
TseI GCWGC 1 cut(s) 488
TspDTI ATGAA 1 cut(s) 50
TspGWI ACGGA 1 cut(s) 150
TspRI CASTG 2 cut(s) 158, 408
VpaK11BI GGWCC 1 cut(s) 277
XcmI CCANNNNNNNNNTGG 1 cut(s) 307
XhoI CTCGAG 1 cut(s) 218
XspI CTAG 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.