Rroxscaffold_3G00272760

Protein of unknown function (DUF1118)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0014162
Physical Location & Seq
Forward (+)
64743578 .. 64744371
794 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00272760.1

Sequence Viewer

Length: 609 bp
ATGGCTGTGTTTTCTGCAACTCCCTCAGCTACTTGCATCAATGGAAATCTCAACCACAACAACAACAACAACAACAACTTTCTTTCCTCTAAACATTTCTCCGATTTCATCTCACCGGCCCGGTCGAGAACCTCCACAATCGTTAACATGGCACCCAAGAAGAAGGTGAACAAAATTGACGGAGGGTGGAAGAAGCAGTGGTTCGGAGCCGGAATATTCTACGAAGGGTCGGAAGACATAGAAGTGGACGTGTTCAAGAAGCTCGAGAAGCGCAAGGTATTGAGCAACGTCGAAAAAGCTGGGCTTCTGACCAAGGCCGAGGACCTTGGGCTGACACTCACGTCCATTGAGAAATTGGGCCTTCTCTCAAAGGCCGAGGAATTGGGCCTGCTCAGCCTGCTTGAGACAGTCGCGGGCTACTCTCCCGCCGCTTTGGCCTCTGCGGCACTGCCGGTTCTGGTTGCGGCGCTGGCGGTGATAGTGTTGATACCGGATGACTCCGCGGCGTTGGTGGTGGTGCAGTATGTGGTGGCTGCTGTGCTTGGGGCTGGGGCTGTGGGTTTGTTAGTGGGCTCGGTTGTCTTGGATGGCTTGCAAGAAGCTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1118

Protein Analysis

202

Amino Acids

21.19

Weight (kDa)

5.74

Isoelectric Point (pI)

33.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1118 PF06549 87 - 201 9.4e-46 Protein of unknown function (DUF1118)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014162)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74730
fragaria_vesca FvH4_5g15500
malus_domestica MD06G1188100.v1.1 MD14G1194200.v1.1
prunus_persica Prupe.5G186300_v2.0.a1
pyrus_communis pycom06g16690 pycom14g16160
rosa_chinensis RchiOBHm_Chr7g0180591
rosa_laevigata RLG00000005252
rosa_multiflora Rmu_sc0005690.1_g000019
rosa_roxburghii Rroxscaffold_3G00272760
rosa_rugosa Rorug06G0434000
rosa_samantha Rh7AG035400 Rh7BG035300 Rh7CG037000 Rh7DG035600
rosa_wichuraiana Rw7G002910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 340
AccB1I GGYRCC 1 cut(s) 151
AccII CGCG 2 cut(s) 413, 503
AciI CCGC 8 cut(s) 413, 426, 429, 443, 464, 473, 501, 503
AflIII ACRYGT 1 cut(s) 249
AgsI TTSAA 1 cut(s) 256
AjiI CACGTC 2 cut(s) 250, 342
AluBI AGCT 4 cut(s) 29, 262, 299, 602
AluI AGCT 4 cut(s) 29, 262, 299, 602
Alw26I GTCTC 1 cut(s) 398
Ama87I CYCGRG 1 cut(s) 263
AoxI GGCC 6 cut(s) 117, 315, 358, 372, 385, 435
ApeKI GCWGC 1 cut(s) 533
AspLEI GCGC 2 cut(s) 273, 469
AspS9I GGNCC 4 cut(s) 118, 322, 358, 385
AsuC2I CCSGG 1 cut(s) 121
AsuHPI GGTGA 3 cut(s) 105, 178, 487
AvaI CYCGRG 1 cut(s) 263
AvaII GGWCC 1 cut(s) 322
BanI GGYRCC 1 cut(s) 151
BanII GRGCYC 1 cut(s) 575
BbsI GAAGAC 1 cut(s) 240
BbvCI CCTCAGC 1 cut(s) 25
BbvI GCAGC 1 cut(s) 520
BccI CCATC 1 cut(s) 581
BcnI CCSGG 1 cut(s) 121
BcoDI GTCTC 1 cut(s) 398
BfoI RGCGCY 1 cut(s) 470
BglI GCCNNNNNGGC 2 cut(s) 434, 443
BisI GCNGC 5 cut(s) 429, 444, 465, 504, 534
BlpI GCTNAGC 1 cut(s) 392
BlsI GCNGC 5 cut(s) 430, 445, 466, 505, 535
Bme1390I CCNGG 1 cut(s) 121
Bme18I GGWCC 1 cut(s) 322
BmeT110I CYCGRG 1 cut(s) 263
BmgBI CACGTC 2 cut(s) 250, 342
BmgT120I GGNCC 4 cut(s) 118, 322, 358, 385
BmiI GGNNCC 2 cut(s) 153, 208
BmrFI CCNGG 1 cut(s) 121
BmsI GCATC 1 cut(s) 45
BpiI GAAGAC 1 cut(s) 240
Bpu10I CCTNAGC 1 cut(s) 25
Bpu1102I GCTNAGC 1 cut(s) 392
BpuEI CTTGAG 1 cut(s) 422
BpuMI CCSGG 1 cut(s) 121
BsaJI CCNNGG 5 cut(s) 312, 318, 325, 375, 501
BsaWI WCCGGW 1 cut(s) 490
Bse118I RCCGGY 2 cut(s) 115, 451
BseDI CCNNGG 5 cut(s) 312, 318, 325, 375, 501
BseGI GGATG 2 cut(s) 499, 592
BseMII CTCAG 2 cut(s) 39, 406
BseXI GCAGC 1 cut(s) 520
BseYI CCCAGC 2 cut(s) 299, 548
BsgI GTGCAG 1 cut(s) 539
Bsh1236I CGCG 2 cut(s) 413, 503
Bsh1285I CGRYCG 1 cut(s) 125
BshFI GGCC 6 cut(s) 119, 317, 360, 374, 387, 437
BshNI GGYRCC 1 cut(s) 151
BsiEI CGRYCG 1 cut(s) 125
BsiHKCI CYCGRG 1 cut(s) 263
BsiSI CCGG 5 cut(s) 116, 121, 210, 452, 491
BsmAI GTCTC 1 cut(s) 398
BsnI GGCC 6 cut(s) 119, 317, 360, 374, 387, 437
BsoBI CYCGRG 1 cut(s) 263
Bsp1286I GDGCHC 1 cut(s) 575
Bsp1720I GCTNAGC 1 cut(s) 392
BspACI CCGC 8 cut(s) 413, 426, 429, 443, 464, 473, 501, 503
BspANI GGCC 6 cut(s) 119, 317, 360, 374, 387, 437
BspCNI CTCAG 2 cut(s) 38, 405
BspFNI CGCG 2 cut(s) 413, 503
BspLI GGNNCC 2 cut(s) 153, 208
BspT107I GGYRCC 1 cut(s) 151
BsrFI RCCGGY 2 cut(s) 115, 451
BssAI RCCGGY 2 cut(s) 115, 451
BssECI CCNNGG 5 cut(s) 312, 318, 325, 375, 501
BssT1I CCWWGG 2 cut(s) 312, 325
Bst4CI ACNGT 1 cut(s) 409
BstC8I GCNNGC 5 cut(s) 389, 398, 415, 471, 593
BstDEI CTNAG 2 cut(s) 25, 392
BstDSI CCRYGG 1 cut(s) 501
BstF5I GGATG 2 cut(s) 499, 592
BstFNI CGCG 2 cut(s) 413, 503
BstH2I RGCGCY 1 cut(s) 470
BstHHI GCGC 2 cut(s) 273, 469
BstMAI GTCTC 1 cut(s) 398
BstMCI CGRYCG 1 cut(s) 125
BstMWI GCNNNNNNNGC 6 cut(s) 268, 393, 397, 434, 443, 470
BstSCI CCNGG 1 cut(s) 119
BstUI CGCG 2 cut(s) 413, 503
BstV1I GCAGC 1 cut(s) 520
BstV2I GAAGAC 1 cut(s) 240
BsuRI GGCC 6 cut(s) 119, 317, 360, 374, 387, 437
BtgI CCRYGG 1 cut(s) 501
BtrI CACGTC 2 cut(s) 250, 342
BtsCI GGATG 2 cut(s) 499, 592
BtsI GCAGTG 2 cut(s) 203, 446
BtsIMutI CAGTG 2 cut(s) 203, 446
Cac8I GCNNGC 5 cut(s) 389, 398, 415, 471, 593
CfoI GCGC 2 cut(s) 273, 469
Cfr10I RCCGGY 2 cut(s) 115, 451
Cfr13I GGNCC 4 cut(s) 118, 322, 358, 385
Cfr42I CCGCGG 1 cut(s) 504
CviAII CATG 1 cut(s) 148
DdeI CTNAG 2 cut(s) 25, 392
DrdI GACNNNNNNGTC 1 cut(s) 340
DseDI GACNNNNNNGTC 1 cut(s) 340
Eco130I CCWWGG 2 cut(s) 312, 325
Eco24I GRGCYC 1 cut(s) 575
Eco47I GGWCC 1 cut(s) 322
Eco88I CYCGRG 1 cut(s) 263
EcoO109I RGGNCCY 1 cut(s) 322
EcoT14I CCWWGG 2 cut(s) 312, 325
EcoT38I GRGCYC 1 cut(s) 575
ErhI CCWWGG 2 cut(s) 312, 325
FaeI CATG 1 cut(s) 151
FaiI YATR 3 cut(s) 149, 239, 525
FalI AAGNNNNNCTT 2 cut(s) 288, 320
FatI CATG 1 cut(s) 147
FauI CCCGC 2 cut(s) 406, 433
Fnu4HI GCNGC 5 cut(s) 429, 444, 465, 504, 534
FokI GGATG 2 cut(s) 506, 599
FriOI GRGCYC 1 cut(s) 575
Fsp4HI GCNGC 5 cut(s) 429, 444, 465, 504, 534
GlaI GCGC 2 cut(s) 272, 468
GluI GCNGC 5 cut(s) 429, 444, 465, 504, 534
GsaI CCCAGC 2 cut(s) 303, 552
HaeII RGCGCY 1 cut(s) 470
HaeIII GGCC 6 cut(s) 119, 317, 360, 374, 387, 437
HapII CCGG 5 cut(s) 116, 121, 210, 452, 491
HhaI GCGC 2 cut(s) 273, 469
Hin1II CATG 1 cut(s) 151
Hin6I GCGC 2 cut(s) 271, 467
HinP1I GCGC 2 cut(s) 271, 467
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
HinfI GANTC 1 cut(s) 497
HpaI GTTAAC 1 cut(s) 145
HpaII CCGG 5 cut(s) 116, 121, 210, 452, 491
HphI GGTGA 3 cut(s) 105, 178, 487
Hpy166II GTNNAC 3 cut(s) 145, 169, 247
Hpy188I TCNGA 4 cut(s) 103, 206, 232, 309
Hpy188III TCNNGA 3 cut(s) 126, 256, 265
Hpy8I GTNNAC 3 cut(s) 145, 169, 247
Hpy99I CGWCG 1 cut(s) 293
HpyAV CCTTC 3 cut(s) 157, 218, 371
HpyCH4III ACNGT 1 cut(s) 409
HpyCH4IV ACGT 3 cut(s) 249, 288, 341
HpyCH4V TGCA 4 cut(s) 17, 36, 520, 595
HpyF10VI GCNNNNNNNGC 6 cut(s) 268, 393, 397, 434, 443, 470
HpyF3I CTNAG 2 cut(s) 25, 392
HpySE526I ACGT 3 cut(s) 249, 288, 341
Hsp92II CATG 1 cut(s) 151
HspAI GCGC 2 cut(s) 271, 467
KspAI GTTAAC 1 cut(s) 145
KspI CCGCGG 1 cut(s) 504
LmnI GCTCC 1 cut(s) 206
Lsp1109I GCAGC 1 cut(s) 520
LweI GCATC 1 cut(s) 45
MaeII ACGT 3 cut(s) 249, 288, 341
MboII GAAGA 3 cut(s) 172, 202, 245
MhlI GDGCHC 1 cut(s) 575
MluCI AATT 3 cut(s) 174, 353, 380
MlyI GAGTC 1 cut(s) 491
MmeI TCCRAC 1 cut(s) 210
MnlI CCTC 7 cut(s) 34, 97, 142, 176, 313, 370, 448
MseI TTAA 1 cut(s) 144
MslI CAYNNNNRTG 1 cut(s) 242
MspA1I CMGCKG 1 cut(s) 503
MspI CCGG 5 cut(s) 116, 121, 210, 452, 491
MspR9I CCNGG 1 cut(s) 121
MvnI CGCG 2 cut(s) 413, 503
MwoI GCNNNNNNNGC 6 cut(s) 268, 393, 397, 434, 443, 470
NciI CCSGG 1 cut(s) 121
NlaIII CATG 1 cut(s) 151
NlaIV GGNNCC 2 cut(s) 153, 208
NmeAIII GCCGAG 2 cut(s) 343, 400
PaeR7I CTCGAG 1 cut(s) 263
PkrI GCNGC 5 cut(s) 430, 445, 466, 505, 535
PleI GAGTC 1 cut(s) 491
PpsI GAGTC 1 cut(s) 491
PpuMI RGGWCCY 1 cut(s) 322
Psp5II RGGWCCY 1 cut(s) 322
PspFI CCCAGC 2 cut(s) 299, 548
PspN4I GGNNCC 2 cut(s) 153, 208
PspPI GGNCC 4 cut(s) 118, 322, 358, 385
PspPPI RGGWCCY 1 cut(s) 322
RseI CAYNNNNRTG 1 cut(s) 242
SacII CCGCGG 1 cut(s) 504
SaqAI TTAA 1 cut(s) 144
SatI GCNGC 5 cut(s) 429, 444, 465, 504, 534
Sau96I GGNCC 4 cut(s) 118, 322, 358, 385
SchI GAGTC 1 cut(s) 491
ScrFI CCNGG 1 cut(s) 121
SduI GDGCHC 1 cut(s) 575
SfaNI GCATC 1 cut(s) 45
Sfr274I CTCGAG 1 cut(s) 263
Sfr303I CCGCGG 1 cut(s) 504
SgrBI CCGCGG 1 cut(s) 504
SinI GGWCC 1 cut(s) 322
SlaI CTCGAG 1 cut(s) 263
SmiMI CAYNNNNRTG 1 cut(s) 242
SmlI CTYRAG 2 cut(s) 263, 401
SmoI CTYRAG 2 cut(s) 263, 401
Sse9I AATT 3 cut(s) 174, 353, 380
SsiI CCGC 8 cut(s) 413, 426, 429, 443, 464, 473, 501, 503
SspI AATATT 1 cut(s) 216
StyD4I CCNGG 1 cut(s) 119
StyI CCWWGG 2 cut(s) 312, 325
TaaI ACNGT 1 cut(s) 409
TaiI ACGT 3 cut(s) 252, 291, 344
TaqI TCGA 3 cut(s) 125, 264, 291
TasI AATT 3 cut(s) 174, 353, 380
TauI GCSGC 4 cut(s) 431, 446, 467, 506
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TscAI CASTG 2 cut(s) 203, 453
TseI GCWGC 1 cut(s) 533
TspDTI ATGAA 1 cut(s) 97
TspGWI ACGGA 1 cut(s) 195
TspRI CASTG 2 cut(s) 203, 453
VpaK11BI GGWCC 1 cut(s) 322
XcmI CCANNNNNNNNNTGG 1 cut(s) 352
XhoI CTCGAG 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.