Rw7G002910

Protein of unknown function (DUF1118)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0014162
Physical Location & Seq
Reverse (-)
2405536 .. 2406701
1166 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G002910.1

Sequence Viewer

Length: 432 bp
ATGGAAATCTCAAACCACAACAACAACAACAACTTTCTTTCCTCTAAACATTTCTCCGATTTCATCTCACCGGCCCGGTCGAGAACCTCCACAATCGTTAACATGGCACCCAAGAAGAAGGTGAACAAAATCGACGAAGGGTGGAAGAAGCAGTGGTTCGGAGCCGGGATATTCTACGAAGGGTCGGAAGACATAGAAGTGGACGTGTTCAAGAAGCTCGAGAAGCGCAAGGTATTGAGCAACGTCGAAAAAGCTGGGCTTCTGACCAAGGCCGAGGACCTTGGGCTGACACTCACGTCCATTGAGAAATTGGGCCTGCTCTCAAAGGCCGAGGAATTGGGCCTGCTCAGCTGCTTGAGACAGTCGCGGGCTACTCTCCCGCTGCTTTGGCCTCCGCAGCACTGCCGGTTCTGGTTGCGGCGCTGGCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1118

Protein Analysis

143

Amino Acids

16.47

Weight (kDa)

9.69

Isoelectric Point (pI)

63.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1118 PF06549 72 - 127 2.8e-21 Protein of unknown function (DUF1118)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014162)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74730
fragaria_vesca FvH4_5g15500
malus_domestica MD06G1188100.v1.1 MD14G1194200.v1.1
prunus_persica Prupe.5G186300_v2.0.a1
pyrus_communis pycom06g16690 pycom14g16160
rosa_chinensis RchiOBHm_Chr7g0180591
rosa_laevigata RLG00000005252
rosa_multiflora Rmu_sc0005690.1_g000019
rosa_roxburghii Rroxscaffold_3G00272760
rosa_rugosa Rorug06G0434000
rosa_samantha Rh7AG035400 Rh7BG035300 Rh7CG037000 Rh7DG035600
rosa_wichuraiana Rw7G002910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 295
AccB1I GGYRCC 1 cut(s) 106
AccII CGCG 1 cut(s) 367
AciI CCGC 5 cut(s) 367, 380, 395, 418, 427
AflIII ACRYGT 1 cut(s) 204
AgsI TTSAA 1 cut(s) 211
AjiI CACGTC 2 cut(s) 205, 297
AluBI AGCT 3 cut(s) 217, 254, 351
AluI AGCT 3 cut(s) 217, 254, 351
Alw26I GTCTC 1 cut(s) 352
Ama87I CYCGRG 1 cut(s) 218
AoxI GGCC 6 cut(s) 72, 270, 313, 327, 340, 389
ApeKI GCWGC 3 cut(s) 351, 382, 397
AspLEI GCGC 2 cut(s) 228, 423
AspS9I GGNCC 4 cut(s) 73, 277, 313, 340
AsuC2I CCSGG 2 cut(s) 76, 166
AsuHPI GGTGA 2 cut(s) 60, 133
AvaI CYCGRG 1 cut(s) 218
AvaII GGWCC 1 cut(s) 277
BanI GGYRCC 1 cut(s) 106
BbsI GAAGAC 1 cut(s) 195
BbvI GCAGC 3 cut(s) 338, 369, 409
BcnI CCSGG 2 cut(s) 76, 166
BcoDI GTCTC 1 cut(s) 352
BfoI RGCGCY 1 cut(s) 424
BisI GCNGC 4 cut(s) 352, 383, 398, 419
BlpI GCTNAGC 1 cut(s) 347
BlsI GCNGC 4 cut(s) 353, 384, 399, 420
Bme1390I CCNGG 2 cut(s) 76, 166
Bme18I GGWCC 1 cut(s) 277
BmeT110I CYCGRG 1 cut(s) 218
BmgBI CACGTC 2 cut(s) 205, 297
BmgT120I GGNCC 4 cut(s) 73, 277, 313, 340
BmiI GGNNCC 2 cut(s) 108, 163
BmrFI CCNGG 2 cut(s) 76, 166
BpiI GAAGAC 1 cut(s) 195
Bpu1102I GCTNAGC 1 cut(s) 347
BpuEI CTTGAG 1 cut(s) 376
BpuMI CCSGG 2 cut(s) 76, 166
BsaJI CCNNGG 4 cut(s) 267, 273, 280, 330
Bse118I RCCGGY 2 cut(s) 70, 405
BseDI CCNNGG 4 cut(s) 267, 273, 280, 330
BseMII CTCAG 1 cut(s) 361
BseXI GCAGC 3 cut(s) 338, 369, 409
BseYI CCCAGC 1 cut(s) 254
Bsh1236I CGCG 1 cut(s) 367
Bsh1285I CGRYCG 1 cut(s) 80
BshFI GGCC 6 cut(s) 74, 272, 315, 329, 342, 391
BshNI GGYRCC 1 cut(s) 106
BsiEI CGRYCG 1 cut(s) 80
BsiHKCI CYCGRG 1 cut(s) 218
BsiSI CCGG 4 cut(s) 71, 76, 165, 406
BsmAI GTCTC 1 cut(s) 352
BsnI GGCC 6 cut(s) 74, 272, 315, 329, 342, 391
BsoBI CYCGRG 1 cut(s) 218
Bsp1720I GCTNAGC 1 cut(s) 347
BspACI CCGC 5 cut(s) 367, 380, 395, 418, 427
BspANI GGCC 6 cut(s) 74, 272, 315, 329, 342, 391
BspCNI CTCAG 1 cut(s) 360
BspFNI CGCG 1 cut(s) 367
BspLI GGNNCC 2 cut(s) 108, 163
BspT107I GGYRCC 1 cut(s) 106
BsrFI RCCGGY 2 cut(s) 70, 405
BssAI RCCGGY 2 cut(s) 70, 405
BssECI CCNNGG 4 cut(s) 267, 273, 280, 330
BssT1I CCWWGG 2 cut(s) 267, 280
Bst4CI ACNGT 1 cut(s) 363
BstC8I GCNNGC 4 cut(s) 317, 344, 369, 425
BstDEI CTNAG 1 cut(s) 347
BstFNI CGCG 1 cut(s) 367
BstH2I RGCGCY 1 cut(s) 424
BstHHI GCGC 2 cut(s) 228, 423
BstMAI GTCTC 1 cut(s) 352
BstMCI CGRYCG 1 cut(s) 80
BstMWI GCNNNNNNNGC 5 cut(s) 223, 348, 388, 397, 424
BstSCI CCNGG 2 cut(s) 74, 164
BstUI CGCG 1 cut(s) 367
BstV1I GCAGC 3 cut(s) 338, 369, 409
BstV2I GAAGAC 1 cut(s) 195
BsuRI GGCC 6 cut(s) 74, 272, 315, 329, 342, 391
BtrI CACGTC 2 cut(s) 205, 297
BtsI GCAGTG 2 cut(s) 158, 400
BtsIMutI CAGTG 2 cut(s) 158, 400
Cac8I GCNNGC 4 cut(s) 317, 344, 369, 425
CfoI GCGC 2 cut(s) 228, 423
Cfr10I RCCGGY 2 cut(s) 70, 405
Cfr13I GGNCC 4 cut(s) 73, 277, 313, 340
CviAII CATG 1 cut(s) 103
DdeI CTNAG 1 cut(s) 347
DrdI GACNNNNNNGTC 1 cut(s) 295
DseDI GACNNNNNNGTC 1 cut(s) 295
Eco130I CCWWGG 2 cut(s) 267, 280
Eco47I GGWCC 1 cut(s) 277
Eco88I CYCGRG 1 cut(s) 218
EcoO109I RGGNCCY 1 cut(s) 277
EcoT14I CCWWGG 2 cut(s) 267, 280
ErhI CCWWGG 2 cut(s) 267, 280
FaeI CATG 1 cut(s) 106
FaiI YATR 2 cut(s) 104, 194
FalI AAGNNNNNCTT 2 cut(s) 243, 275
FatI CATG 1 cut(s) 102
FauI CCCGC 2 cut(s) 360, 387
Fnu4HI GCNGC 4 cut(s) 352, 383, 398, 419
Fsp4HI GCNGC 4 cut(s) 352, 383, 398, 419
GlaI GCGC 2 cut(s) 227, 422
GluI GCNGC 4 cut(s) 352, 383, 398, 419
GsaI CCCAGC 1 cut(s) 258
HaeII RGCGCY 1 cut(s) 424
HaeIII GGCC 6 cut(s) 74, 272, 315, 329, 342, 391
HapII CCGG 4 cut(s) 71, 76, 165, 406
HhaI GCGC 2 cut(s) 228, 423
Hin1II CATG 1 cut(s) 106
Hin6I GCGC 2 cut(s) 226, 421
HinP1I GCGC 2 cut(s) 226, 421
HincII GTYRAC 1 cut(s) 100
HindII GTYRAC 1 cut(s) 100
HpaI GTTAAC 1 cut(s) 100
HpaII CCGG 4 cut(s) 71, 76, 165, 406
HphI GGTGA 2 cut(s) 60, 133
Hpy166II GTNNAC 3 cut(s) 100, 124, 202
Hpy188I TCNGA 4 cut(s) 58, 161, 187, 264
Hpy188III TCNNGA 3 cut(s) 81, 211, 220
Hpy8I GTNNAC 3 cut(s) 100, 124, 202
Hpy99I CGWCG 2 cut(s) 137, 248
HpyAV CCTTC 3 cut(s) 112, 131, 173
HpyCH4III ACNGT 1 cut(s) 363
HpyCH4IV ACGT 3 cut(s) 204, 243, 296
HpyF10VI GCNNNNNNNGC 5 cut(s) 223, 348, 388, 397, 424
HpyF3I CTNAG 1 cut(s) 347
HpySE526I ACGT 3 cut(s) 204, 243, 296
Hsp92II CATG 1 cut(s) 106
HspAI GCGC 2 cut(s) 226, 421
KspAI GTTAAC 1 cut(s) 100
LmnI GCTCC 1 cut(s) 161
LpnPI CCDG 9 cut(s) 84, 89, 178, 240, 329, 356, 397, 409, 419
Lsp1109I GCAGC 3 cut(s) 338, 369, 409
MaeII ACGT 3 cut(s) 204, 243, 296
MboII GAAGA 3 cut(s) 127, 157, 200
MluCI AATT 2 cut(s) 308, 335
MmeI TCCRAC 1 cut(s) 165
MnlI CCTC 5 cut(s) 52, 97, 268, 325, 402
MseI TTAA 1 cut(s) 99
MslI CAYNNNNRTG 1 cut(s) 197
MspA1I CMGCKG 2 cut(s) 351, 382
MspI CCGG 4 cut(s) 71, 76, 165, 406
MspR9I CCNGG 2 cut(s) 76, 166
MvnI CGCG 1 cut(s) 367
MwoI GCNNNNNNNGC 5 cut(s) 223, 348, 388, 397, 424
NciI CCSGG 2 cut(s) 76, 166
NlaIII CATG 1 cut(s) 106
NlaIV GGNNCC 2 cut(s) 108, 163
NmeAIII GCCGAG 2 cut(s) 298, 355
PaeR7I CTCGAG 1 cut(s) 218
PkrI GCNGC 4 cut(s) 353, 384, 399, 420
PpuMI RGGWCCY 1 cut(s) 277
Psp5II RGGWCCY 1 cut(s) 277
PspFI CCCAGC 1 cut(s) 254
PspN4I GGNNCC 2 cut(s) 108, 163
PspPI GGNCC 4 cut(s) 73, 277, 313, 340
PspPPI RGGWCCY 1 cut(s) 277
PvuII CAGCTG 1 cut(s) 351
RseI CAYNNNNRTG 1 cut(s) 197
SaqAI TTAA 1 cut(s) 99
SatI GCNGC 4 cut(s) 352, 383, 398, 419
Sau96I GGNCC 4 cut(s) 73, 277, 313, 340
ScrFI CCNGG 2 cut(s) 76, 166
Sfr274I CTCGAG 1 cut(s) 218
SinI GGWCC 1 cut(s) 277
SlaI CTCGAG 1 cut(s) 218
SmiMI CAYNNNNRTG 1 cut(s) 197
SmlI CTYRAG 2 cut(s) 218, 355
SmoI CTYRAG 2 cut(s) 218, 355
Sse9I AATT 2 cut(s) 308, 335
SsiI CCGC 5 cut(s) 367, 380, 395, 418, 427
StyD4I CCNGG 2 cut(s) 74, 164
StyI CCWWGG 2 cut(s) 267, 280
TaaI ACNGT 1 cut(s) 363
TaiI ACGT 3 cut(s) 207, 246, 299
TaqI TCGA 4 cut(s) 80, 132, 219, 246
TasI AATT 2 cut(s) 308, 335
TauI GCSGC 1 cut(s) 421
Tru1I TTAA 1 cut(s) 99
Tru9I TTAA 1 cut(s) 99
TscAI CASTG 2 cut(s) 158, 407
TseI GCWGC 3 cut(s) 351, 382, 397
TspDTI ATGAA 1 cut(s) 52
TspRI CASTG 2 cut(s) 158, 407
VpaK11BI GGWCC 1 cut(s) 277
XcmI CCANNNNNNNNNTGG 1 cut(s) 307
XhoI CTCGAG 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.