RLG00000005252

Protein of unknown function (DUF1118)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0014162
Physical Location & Seq
Forward (+)
66233749 .. 66234628
880 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005252

Sequence Viewer

Length: 612 bp
ATGGCTGTGTTTTCTGCAACTCCCTCAGCTACTTGCATCAATGGAAATCTCAACCACAACAACAACAACAACAACAACAACTTTCTTTCCTCTAAACATTTCTCCGATTTCATCTCACCGGCCCGGTTGAGAACCTCCACAATCGTTAACATGGCACCCAAGAAGAAGGTGAACAAAATCGACGGAGGGTGGAAGAAGCAGTGGTTCGGAGCCGGAATATTCTACGAAGGGTCGGAAGACATAGAAGTGGACGTGTTCAAGAAGCTCGAGAAGCGCAAGGTATTGAGCAACGTCGAAAAAGCTGGGCTTCTGACCAAGGCCGAGGACCTTGGGCTGACACTCTCGTCCATTGAGAAATTGGGCCTGCTCTCAAAGGCCGAGGAATTGGGCCTGCTCAGCCTGCTTGAGACAGTCGCGGGCTACTCTCCCTCCACTTTGGCCTCCGCGGCACTGCCAGTTCTGGTTGCGGCGCTGGCGGTGATAGTGTTGATACCGGATGACTCGGCGGCGTTGGTGGTGGTGCAGTATGTGGTGGCTGCTGTGCTTGGGGCTGGGGCTGTGGGTTTGTTAGTGGGCTCGGTTGTCTTGGATGGCTTGCAAGAAGCTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1118

Protein Analysis

204

Amino Acids

21.37

Weight (kDa)

5.74

Isoelectric Point (pI)

32.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1118 PF06549 88 - 202 1.8e-46 Protein of unknown function (DUF1118)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014162)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74730
fragaria_vesca FvH4_5g15500
malus_domestica MD06G1188100.v1.1 MD14G1194200.v1.1
prunus_persica Prupe.5G186300_v2.0.a1
pyrus_communis pycom06g16690 pycom14g16160
rosa_chinensis RchiOBHm_Chr7g0180591
rosa_laevigata RLG00000005252
rosa_multiflora Rmu_sc0005690.1_g000019
rosa_roxburghii Rroxscaffold_3G00272760
rosa_rugosa Rorug06G0434000
rosa_samantha Rh7AG035400 Rh7BG035300 Rh7CG037000 Rh7DG035600
rosa_wichuraiana Rw7G002910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 343
AccB1I GGYRCC 1 cut(s) 154
AccII CGCG 2 cut(s) 416, 446
AciI CCGC 6 cut(s) 416, 444, 446, 467, 476, 506
AflIII ACRYGT 1 cut(s) 252
AgsI TTSAA 1 cut(s) 259
AjiI CACGTC 1 cut(s) 253
AluBI AGCT 4 cut(s) 29, 265, 302, 605
AluI AGCT 4 cut(s) 29, 265, 302, 605
Alw26I GTCTC 1 cut(s) 401
Ama87I CYCGRG 1 cut(s) 266
AoxI GGCC 6 cut(s) 120, 318, 361, 375, 388, 438
ApeKI GCWGC 1 cut(s) 536
AspLEI GCGC 2 cut(s) 276, 472
AspS9I GGNCC 4 cut(s) 121, 325, 361, 388
AsuC2I CCSGG 1 cut(s) 124
AsuHPI GGTGA 3 cut(s) 108, 181, 490
AvaI CYCGRG 1 cut(s) 266
AvaII GGWCC 1 cut(s) 325
BanI GGYRCC 1 cut(s) 154
BanII GRGCYC 1 cut(s) 578
BbsI GAAGAC 1 cut(s) 243
BbvCI CCTCAGC 1 cut(s) 25
BbvI GCAGC 1 cut(s) 523
BccI CCATC 1 cut(s) 584
BcnI CCSGG 1 cut(s) 124
BcoDI GTCTC 1 cut(s) 401
BfoI RGCGCY 1 cut(s) 473
BglI GCCNNNNNGGC 1 cut(s) 446
BisI GCNGC 4 cut(s) 447, 468, 507, 537
BlpI GCTNAGC 1 cut(s) 395
BlsI GCNGC 4 cut(s) 448, 469, 508, 538
Bme1390I CCNGG 1 cut(s) 124
Bme18I GGWCC 1 cut(s) 325
BmeT110I CYCGRG 1 cut(s) 266
BmgBI CACGTC 1 cut(s) 253
BmgT120I GGNCC 4 cut(s) 121, 325, 361, 388
BmiI GGNNCC 2 cut(s) 156, 211
BmrFI CCNGG 1 cut(s) 124
BmsI GCATC 1 cut(s) 45
BpiI GAAGAC 1 cut(s) 243
Bpu10I CCTNAGC 1 cut(s) 25
Bpu1102I GCTNAGC 1 cut(s) 395
BpuEI CTTGAG 1 cut(s) 425
BpuMI CCSGG 1 cut(s) 124
BsaJI CCNNGG 5 cut(s) 315, 321, 328, 378, 444
BsaWI WCCGGW 1 cut(s) 493
BsaXI ACNNNNNCTCC 2 cut(s) 413, 443
Bse118I RCCGGY 1 cut(s) 118
Bse1I ACTGG 1 cut(s) 455
BseDI CCNNGG 5 cut(s) 315, 321, 328, 378, 444
BseGI GGATG 2 cut(s) 502, 595
BseMII CTCAG 2 cut(s) 39, 409
BseNI ACTGG 1 cut(s) 455
BseXI GCAGC 1 cut(s) 523
BseYI CCCAGC 2 cut(s) 302, 551
BsgI GTGCAG 1 cut(s) 542
Bsh1236I CGCG 2 cut(s) 416, 446
BshFI GGCC 6 cut(s) 122, 320, 363, 377, 390, 440
BshNI GGYRCC 1 cut(s) 154
BsiHKCI CYCGRG 1 cut(s) 266
BsiSI CCGG 4 cut(s) 119, 124, 213, 494
BsmAI GTCTC 1 cut(s) 401
BsnI GGCC 6 cut(s) 122, 320, 363, 377, 390, 440
BsoBI CYCGRG 1 cut(s) 266
Bsp1286I GDGCHC 1 cut(s) 578
Bsp1720I GCTNAGC 1 cut(s) 395
BspACI CCGC 6 cut(s) 416, 444, 446, 467, 476, 506
BspANI GGCC 6 cut(s) 122, 320, 363, 377, 390, 440
BspCNI CTCAG 2 cut(s) 38, 408
BspFNI CGCG 2 cut(s) 416, 446
BspLI GGNNCC 2 cut(s) 156, 211
BspT107I GGYRCC 1 cut(s) 154
BsrFI RCCGGY 1 cut(s) 118
BsrI ACTGG 1 cut(s) 455
BssAI RCCGGY 1 cut(s) 118
BssECI CCNNGG 5 cut(s) 315, 321, 328, 378, 444
BssT1I CCWWGG 2 cut(s) 315, 328
Bst4CI ACNGT 1 cut(s) 412
BstC8I GCNNGC 6 cut(s) 365, 392, 401, 418, 474, 596
BstDEI CTNAG 2 cut(s) 25, 395
BstDSI CCRYGG 1 cut(s) 444
BstF5I GGATG 2 cut(s) 502, 595
BstFNI CGCG 2 cut(s) 416, 446
BstH2I RGCGCY 1 cut(s) 473
BstHHI GCGC 2 cut(s) 276, 472
BstMAI GTCTC 1 cut(s) 401
BstMWI GCNNNNNNNGC 5 cut(s) 271, 396, 400, 446, 473
BstSCI CCNGG 1 cut(s) 122
BstUI CGCG 2 cut(s) 416, 446
BstV1I GCAGC 1 cut(s) 523
BstV2I GAAGAC 1 cut(s) 243
BsuRI GGCC 6 cut(s) 122, 320, 363, 377, 390, 440
BtgI CCRYGG 1 cut(s) 444
BtrI CACGTC 1 cut(s) 253
BtsCI GGATG 2 cut(s) 502, 595
BtsI GCAGTG 2 cut(s) 206, 449
BtsIMutI CAGTG 2 cut(s) 206, 449
Cac8I GCNNGC 6 cut(s) 365, 392, 401, 418, 474, 596
CfoI GCGC 2 cut(s) 276, 472
Cfr10I RCCGGY 1 cut(s) 118
Cfr13I GGNCC 4 cut(s) 121, 325, 361, 388
Cfr42I CCGCGG 1 cut(s) 447
CviAII CATG 1 cut(s) 151
DdeI CTNAG 2 cut(s) 25, 395
DrdI GACNNNNNNGTC 1 cut(s) 343
DseDI GACNNNNNNGTC 1 cut(s) 343
Eco130I CCWWGG 2 cut(s) 315, 328
Eco24I GRGCYC 1 cut(s) 578
Eco47I GGWCC 1 cut(s) 325
Eco88I CYCGRG 1 cut(s) 266
EcoO109I RGGNCCY 1 cut(s) 325
EcoT14I CCWWGG 2 cut(s) 315, 328
EcoT38I GRGCYC 1 cut(s) 578
ErhI CCWWGG 2 cut(s) 315, 328
FaeI CATG 1 cut(s) 154
FaiI YATR 3 cut(s) 152, 242, 528
FalI AAGNNNNNCTT 2 cut(s) 291, 323
FatI CATG 1 cut(s) 150
FauI CCCGC 1 cut(s) 409
Fnu4HI GCNGC 4 cut(s) 447, 468, 507, 537
FokI GGATG 2 cut(s) 509, 602
FriOI GRGCYC 1 cut(s) 578
Fsp4HI GCNGC 4 cut(s) 447, 468, 507, 537
GlaI GCGC 2 cut(s) 275, 471
GluI GCNGC 4 cut(s) 447, 468, 507, 537
GsaI CCCAGC 2 cut(s) 306, 555
HaeII RGCGCY 1 cut(s) 473
HaeIII GGCC 6 cut(s) 122, 320, 363, 377, 390, 440
HapII CCGG 4 cut(s) 119, 124, 213, 494
HhaI GCGC 2 cut(s) 276, 472
Hin1II CATG 1 cut(s) 154
Hin6I GCGC 2 cut(s) 274, 470
HinP1I GCGC 2 cut(s) 274, 470
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HinfI GANTC 1 cut(s) 500
HpaI GTTAAC 1 cut(s) 148
HpaII CCGG 4 cut(s) 119, 124, 213, 494
HphI GGTGA 3 cut(s) 108, 181, 490
Hpy166II GTNNAC 3 cut(s) 148, 172, 250
Hpy188I TCNGA 4 cut(s) 106, 209, 235, 312
Hpy188III TCNNGA 2 cut(s) 259, 268
Hpy8I GTNNAC 3 cut(s) 148, 172, 250
Hpy99I CGWCG 2 cut(s) 185, 296
HpyAV CCTTC 2 cut(s) 160, 221
HpyCH4III ACNGT 1 cut(s) 412
HpyCH4IV ACGT 2 cut(s) 252, 291
HpyCH4V TGCA 4 cut(s) 17, 36, 523, 598
HpyF10VI GCNNNNNNNGC 5 cut(s) 271, 396, 400, 446, 473
HpyF3I CTNAG 2 cut(s) 25, 395
HpySE526I ACGT 2 cut(s) 252, 291
Hsp92II CATG 1 cut(s) 154
HspAI GCGC 2 cut(s) 274, 470
KspAI GTTAAC 1 cut(s) 148
KspI CCGCGG 1 cut(s) 447
LmnI GCTCC 1 cut(s) 209
Lsp1109I GCAGC 1 cut(s) 523
LweI GCATC 1 cut(s) 45
MaeII ACGT 2 cut(s) 252, 291
MboII GAAGA 3 cut(s) 175, 205, 248
MhlI GDGCHC 1 cut(s) 578
MluCI AATT 2 cut(s) 356, 383
MlyI GAGTC 1 cut(s) 494
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 8 cut(s) 34, 100, 145, 179, 316, 373, 439, 451
MseI TTAA 1 cut(s) 147
MslI CAYNNNNRTG 1 cut(s) 245
MspA1I CMGCKG 1 cut(s) 446
MspI CCGG 4 cut(s) 119, 124, 213, 494
MspR9I CCNGG 1 cut(s) 124
MvnI CGCG 2 cut(s) 416, 446
MwoI GCNNNNNNNGC 5 cut(s) 271, 396, 400, 446, 473
NciI CCSGG 1 cut(s) 124
NlaIII CATG 1 cut(s) 154
NlaIV GGNNCC 2 cut(s) 156, 211
NmeAIII GCCGAG 3 cut(s) 346, 403, 482
PaeR7I CTCGAG 1 cut(s) 266
PkrI GCNGC 4 cut(s) 448, 469, 508, 538
PleI GAGTC 1 cut(s) 494
PpsI GAGTC 1 cut(s) 494
PpuMI RGGWCCY 1 cut(s) 325
Psp5II RGGWCCY 1 cut(s) 325
PspFI CCCAGC 2 cut(s) 302, 551
PspN4I GGNNCC 2 cut(s) 156, 211
PspPI GGNCC 4 cut(s) 121, 325, 361, 388
PspPPI RGGWCCY 1 cut(s) 325
RseI CAYNNNNRTG 1 cut(s) 245
SacII CCGCGG 1 cut(s) 447
SaqAI TTAA 1 cut(s) 147
SatI GCNGC 4 cut(s) 447, 468, 507, 537
Sau96I GGNCC 4 cut(s) 121, 325, 361, 388
SchI GAGTC 1 cut(s) 494
ScrFI CCNGG 1 cut(s) 124
SduI GDGCHC 1 cut(s) 578
SfaNI GCATC 1 cut(s) 45
Sfr274I CTCGAG 1 cut(s) 266
Sfr303I CCGCGG 1 cut(s) 447
SgrBI CCGCGG 1 cut(s) 447
SinI GGWCC 1 cut(s) 325
SlaI CTCGAG 1 cut(s) 266
SmiMI CAYNNNNRTG 1 cut(s) 245
SmlI CTYRAG 2 cut(s) 266, 404
SmoI CTYRAG 2 cut(s) 266, 404
Sse9I AATT 2 cut(s) 356, 383
SsiI CCGC 6 cut(s) 416, 444, 446, 467, 476, 506
SspI AATATT 1 cut(s) 219
StyD4I CCNGG 1 cut(s) 122
StyI CCWWGG 2 cut(s) 315, 328
TaaI ACNGT 1 cut(s) 412
TaiI ACGT 2 cut(s) 255, 294
TaqI TCGA 3 cut(s) 180, 267, 294
TasI AATT 2 cut(s) 356, 383
TauI GCSGC 3 cut(s) 449, 470, 509
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TscAI CASTG 2 cut(s) 206, 456
TseI GCWGC 1 cut(s) 536
TspDTI ATGAA 1 cut(s) 100
TspGWI ACGGA 1 cut(s) 198
TspRI CASTG 2 cut(s) 206, 456
VpaK11BI GGWCC 1 cut(s) 325
XcmI CCANNNNNNNNNTGG 1 cut(s) 355
XhoI CTCGAG 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.