Rmu_sc0005690.1_g000019

Protein of unknown function (DUF1118)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005690.1
OG0014162
Physical Location & Seq
Reverse (-)
72237 .. 72954
718 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005690.1_g000019.1.cds

Sequence Viewer

Length: 603 bp
atggctgtgttttctgcaactccctcagctacttgcatcaatggaaatctcaaccacaacaacaacaacaactttctttcctctaaacatttctccgatttcatctcaccggcccggtcgagaacctccacaatcgttaacatggcacccaagaagaaggtgaacaaaatcgacgaagggtggaagaagcagtggttcggagccgggatattctacgaagggtcggaagacatagaagtggacgtgttcaagaagctcgagaagcgcaaggttttgagcaacgtcgaaaaagctgggcttctgaccaaggccgaggaccttgggctgacactcacgtccattgagaaattgggcctgctctcaaaggccgaggaattcggcctgctcagcctgcttgagacagtcgcgggctactctcccgctgctttggcctccgcagcactgccggttctggttgcggcgctggcggtgatagtgttgataccggatgactcggcggcgttggtggtggtgcagtatgtggtggctgctgttcttggggctggggctgtgggtttgttagtgggctctgttgtcttggatggcttgcaagaagctgattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1118

Protein Analysis

200

Amino Acids

21.07

Weight (kDa)

5.47

Isoelectric Point (pI)

33.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014162)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74730
fragaria_vesca FvH4_5g15500
malus_domestica MD06G1188100.v1.1 MD14G1194200.v1.1
prunus_persica Prupe.5G186300_v2.0.a1
pyrus_communis pycom06g16690 pycom14g16160
rosa_chinensis RchiOBHm_Chr7g0180591
rosa_laevigata RLG00000005252
rosa_multiflora Rmu_sc0005690.1_g000019
rosa_roxburghii Rroxscaffold_3G00272760
rosa_rugosa Rorug06G0434000
rosa_samantha Rh7AG035400 Rh7BG035300 Rh7CG037000 Rh7DG035600
rosa_wichuraiana Rw7G002910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 334
AccB1I GGYRCC 1 cut(s) 145
AccII CGCG 1 cut(s) 407
AciI CCGC 6 cut(s) 407, 420, 435, 458, 467, 497
AcsI RAATTY 1 cut(s) 374
AflIII ACRYGT 1 cut(s) 243
AgsI TTSAA 1 cut(s) 250
AjiI CACGTC 2 cut(s) 244, 336
AluBI AGCT 4 cut(s) 29, 256, 293, 596
AluI AGCT 4 cut(s) 29, 256, 293, 596
Alw26I GTCTC 1 cut(s) 392
Ama87I CYCGRG 1 cut(s) 257
AoxI GGCC 6 cut(s) 111, 309, 352, 366, 379, 429
ApeKI GCWGC 3 cut(s) 422, 437, 527
ApoI RAATTY 1 cut(s) 374
AspLEI GCGC 2 cut(s) 267, 463
AspS9I GGNCC 3 cut(s) 112, 316, 352
AsuC2I CCSGG 2 cut(s) 115, 205
AsuHPI GGTGA 3 cut(s) 99, 172, 481
AvaI CYCGRG 1 cut(s) 257
AvaII GGWCC 1 cut(s) 316
BanI GGYRCC 1 cut(s) 145
BanII GRGCYC 1 cut(s) 569
BbsI GAAGAC 1 cut(s) 234
BbvCI CCTCAGC 1 cut(s) 25
BbvI GCAGC 3 cut(s) 409, 449, 514
BccI CCATC 1 cut(s) 575
BcnI CCSGG 2 cut(s) 115, 205
BcoDI GTCTC 1 cut(s) 392
BfoI RGCGCY 1 cut(s) 464
BisI GCNGC 5 cut(s) 423, 438, 459, 498, 528
BlpI GCTNAGC 1 cut(s) 386
BlsI GCNGC 5 cut(s) 424, 439, 460, 499, 529
Bme1390I CCNGG 2 cut(s) 115, 205
Bme18I GGWCC 1 cut(s) 316
BmeT110I CYCGRG 1 cut(s) 257
BmgBI CACGTC 2 cut(s) 244, 336
BmgT120I GGNCC 3 cut(s) 112, 316, 352
BmiI GGNNCC 2 cut(s) 147, 202
BmrFI CCNGG 2 cut(s) 115, 205
BmsI GCATC 1 cut(s) 45
BpiI GAAGAC 1 cut(s) 234
Bpu10I CCTNAGC 1 cut(s) 25
Bpu1102I GCTNAGC 1 cut(s) 386
BpuEI CTTGAG 1 cut(s) 416
BpuMI CCSGG 2 cut(s) 115, 205
BsaJI CCNNGG 4 cut(s) 306, 312, 319, 369
BsaWI WCCGGW 1 cut(s) 484
Bse118I RCCGGY 2 cut(s) 109, 445
BseDI CCNNGG 4 cut(s) 306, 312, 319, 369
BseGI GGATG 2 cut(s) 493, 586
BseMII CTCAG 2 cut(s) 39, 400
BseXI GCAGC 3 cut(s) 409, 449, 514
BseYI CCCAGC 2 cut(s) 293, 542
BsgI GTGCAG 1 cut(s) 533
Bsh1236I CGCG 1 cut(s) 407
Bsh1285I CGRYCG 1 cut(s) 119
BshFI GGCC 6 cut(s) 113, 311, 354, 368, 381, 431
BshNI GGYRCC 1 cut(s) 145
BsiEI CGRYCG 1 cut(s) 119
BsiHKCI CYCGRG 1 cut(s) 257
BsiSI CCGG 5 cut(s) 110, 115, 204, 446, 485
BsmAI GTCTC 1 cut(s) 392
BsnI GGCC 6 cut(s) 113, 311, 354, 368, 381, 431
BsoBI CYCGRG 1 cut(s) 257
Bsp1286I GDGCHC 1 cut(s) 569
Bsp1720I GCTNAGC 1 cut(s) 386
BspACI CCGC 6 cut(s) 407, 420, 435, 458, 467, 497
BspANI GGCC 6 cut(s) 113, 311, 354, 368, 381, 431
BspCNI CTCAG 2 cut(s) 38, 399
BspFNI CGCG 1 cut(s) 407
BspLI GGNNCC 2 cut(s) 147, 202
BspT107I GGYRCC 1 cut(s) 145
BsrFI RCCGGY 2 cut(s) 109, 445
BssAI RCCGGY 2 cut(s) 109, 445
BssECI CCNNGG 4 cut(s) 306, 312, 319, 369
BssT1I CCWWGG 2 cut(s) 306, 319
Bst4CI ACNGT 1 cut(s) 403
BstC8I GCNNGC 6 cut(s) 356, 383, 392, 409, 465, 587
BstDEI CTNAG 2 cut(s) 25, 386
BstF5I GGATG 2 cut(s) 493, 586
BstFNI CGCG 1 cut(s) 407
BstH2I RGCGCY 1 cut(s) 464
BstHHI GCGC 2 cut(s) 267, 463
BstMAI GTCTC 1 cut(s) 392
BstMCI CGRYCG 1 cut(s) 119
BstMWI GCNNNNNNNGC 6 cut(s) 262, 387, 391, 428, 437, 464
BstSCI CCNGG 2 cut(s) 113, 203
BstUI CGCG 1 cut(s) 407
BstV1I GCAGC 3 cut(s) 409, 449, 514
BstV2I GAAGAC 1 cut(s) 234
BsuRI GGCC 6 cut(s) 113, 311, 354, 368, 381, 431
BtrI CACGTC 2 cut(s) 244, 336
BtsCI GGATG 2 cut(s) 493, 586
BtsI GCAGTG 2 cut(s) 197, 440
BtsIMutI CAGTG 2 cut(s) 197, 440
Cac8I GCNNGC 6 cut(s) 356, 383, 392, 409, 465, 587
CfoI GCGC 2 cut(s) 267, 463
Cfr10I RCCGGY 2 cut(s) 109, 445
Cfr13I GGNCC 3 cut(s) 112, 316, 352
CviAII CATG 1 cut(s) 142
DdeI CTNAG 2 cut(s) 25, 386
DrdI GACNNNNNNGTC 1 cut(s) 334
DseDI GACNNNNNNGTC 1 cut(s) 334
Eco130I CCWWGG 2 cut(s) 306, 319
Eco24I GRGCYC 1 cut(s) 569
Eco47I GGWCC 1 cut(s) 316
Eco88I CYCGRG 1 cut(s) 257
EcoO109I RGGNCCY 1 cut(s) 316
EcoRI GAATTC 1 cut(s) 374
EcoT14I CCWWGG 2 cut(s) 306, 319
EcoT38I GRGCYC 1 cut(s) 569
ErhI CCWWGG 2 cut(s) 306, 319
FaeI CATG 1 cut(s) 145
FaiI YATR 3 cut(s) 143, 233, 519
FalI AAGNNNNNCTT 2 cut(s) 282, 314
FatI CATG 1 cut(s) 141
FauI CCCGC 2 cut(s) 400, 427
Fnu4HI GCNGC 5 cut(s) 423, 438, 459, 498, 528
FokI GGATG 2 cut(s) 500, 593
FriOI GRGCYC 1 cut(s) 569
Fsp4HI GCNGC 5 cut(s) 423, 438, 459, 498, 528
GlaI GCGC 2 cut(s) 266, 462
GluI GCNGC 5 cut(s) 423, 438, 459, 498, 528
GsaI CCCAGC 2 cut(s) 297, 546
HaeII RGCGCY 1 cut(s) 464
HaeIII GGCC 6 cut(s) 113, 311, 354, 368, 381, 431
HapII CCGG 5 cut(s) 110, 115, 204, 446, 485
HhaI GCGC 2 cut(s) 267, 463
Hin1II CATG 1 cut(s) 145
Hin6I GCGC 2 cut(s) 265, 461
HinP1I GCGC 2 cut(s) 265, 461
HincII GTYRAC 1 cut(s) 139
HindII GTYRAC 1 cut(s) 139
HinfI GANTC 1 cut(s) 491
HpaI GTTAAC 1 cut(s) 139
HpaII CCGG 5 cut(s) 110, 115, 204, 446, 485
HphI GGTGA 3 cut(s) 99, 172, 481
Hpy166II GTNNAC 3 cut(s) 139, 163, 241
Hpy188I TCNGA 4 cut(s) 97, 200, 226, 303
Hpy188III TCNNGA 3 cut(s) 120, 250, 259
Hpy8I GTNNAC 3 cut(s) 139, 163, 241
Hpy99I CGWCG 2 cut(s) 176, 287
HpyAV CCTTC 3 cut(s) 151, 170, 212
HpyCH4III ACNGT 1 cut(s) 403
HpyCH4IV ACGT 3 cut(s) 243, 282, 335
HpyCH4V TGCA 4 cut(s) 17, 36, 514, 589
HpyF10VI GCNNNNNNNGC 6 cut(s) 262, 387, 391, 428, 437, 464
HpyF3I CTNAG 2 cut(s) 25, 386
HpySE526I ACGT 3 cut(s) 243, 282, 335
Hsp92II CATG 1 cut(s) 145
HspAI GCGC 2 cut(s) 265, 461
KspAI GTTAAC 1 cut(s) 139
LmnI GCTCC 1 cut(s) 200
Lsp1109I GCAGC 3 cut(s) 409, 449, 514
LweI GCATC 1 cut(s) 45
MaeII ACGT 3 cut(s) 243, 282, 335
MboII GAAGA 3 cut(s) 166, 196, 239
MhlI GDGCHC 1 cut(s) 569
MluCI AATT 2 cut(s) 347, 374
MlyI GAGTC 1 cut(s) 485
MmeI TCCRAC 1 cut(s) 204
MnlI CCTC 6 cut(s) 34, 91, 136, 307, 364, 442
MseI TTAA 1 cut(s) 138
MslI CAYNNNNRTG 1 cut(s) 236
MspA1I CMGCKG 1 cut(s) 422
MspI CCGG 5 cut(s) 110, 115, 204, 446, 485
MspR9I CCNGG 2 cut(s) 115, 205
MvnI CGCG 1 cut(s) 407
MwoI GCNNNNNNNGC 6 cut(s) 262, 387, 391, 428, 437, 464
NciI CCSGG 2 cut(s) 115, 205
NlaIII CATG 1 cut(s) 145
NlaIV GGNNCC 2 cut(s) 147, 202
NmeAIII GCCGAG 3 cut(s) 337, 394, 473
PaeR7I CTCGAG 1 cut(s) 257
PkrI GCNGC 5 cut(s) 424, 439, 460, 499, 529
PleI GAGTC 1 cut(s) 485
PpsI GAGTC 1 cut(s) 485
PpuMI RGGWCCY 1 cut(s) 316
Psp5II RGGWCCY 1 cut(s) 316
PspFI CCCAGC 2 cut(s) 293, 542
PspN4I GGNNCC 2 cut(s) 147, 202
PspPI GGNCC 3 cut(s) 112, 316, 352
PspPPI RGGWCCY 1 cut(s) 316
RseI CAYNNNNRTG 1 cut(s) 236
SaqAI TTAA 1 cut(s) 138
SatI GCNGC 5 cut(s) 423, 438, 459, 498, 528
Sau96I GGNCC 3 cut(s) 112, 316, 352
SchI GAGTC 1 cut(s) 485
ScrFI CCNGG 2 cut(s) 115, 205
SduI GDGCHC 1 cut(s) 569
SfaNI GCATC 1 cut(s) 45
Sfr274I CTCGAG 1 cut(s) 257
SinI GGWCC 1 cut(s) 316
SlaI CTCGAG 1 cut(s) 257
SmiMI CAYNNNNRTG 1 cut(s) 236
SmlI CTYRAG 2 cut(s) 257, 395
SmoI CTYRAG 2 cut(s) 257, 395
Sse9I AATT 2 cut(s) 347, 374
SsiI CCGC 6 cut(s) 407, 420, 435, 458, 467, 497
StyD4I CCNGG 2 cut(s) 113, 203
StyI CCWWGG 2 cut(s) 306, 319
TaaI ACNGT 1 cut(s) 403
TaiI ACGT 3 cut(s) 246, 285, 338
TaqI TCGA 4 cut(s) 119, 171, 258, 285
TasI AATT 2 cut(s) 347, 374
TauI GCSGC 2 cut(s) 461, 500
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TscAI CASTG 2 cut(s) 197, 447
TseI GCWGC 3 cut(s) 422, 437, 527
TspDTI ATGAA 1 cut(s) 91
TspRI CASTG 2 cut(s) 197, 447
VpaK11BI GGWCC 1 cut(s) 316
XapI RAATTY 1 cut(s) 374
XcmI CCANNNNNNNNNTGG 1 cut(s) 346
XhoI CTCGAG 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.