Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0003868

Physical Location & Seq

Genomic Coordinates Forward (+)

9374056 .. 9376454

Gene Structure 2399 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g16480.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1365 bp

ATGAAGAACCAAAAGACTGGGCATGTGATTGTGCTCACATATCCAGCTCAAGGCCATATAAACCCTCTCCTTCAATTTGCTAAGCGCTTAGCCTACAAAGGACTAAAGGTCACTCTAGCCACCACCCCTTACACTCTCAAATCCATCCACTCAACCACTGTTGGAATTGAACCAATCTCAGATGGCTATGATGAAAGTGGATTTAGCCAGTCCCCAAGTGTTCAGACCTACTTAGACTCATTCAAAACAGTTGGCTCAAGAACACTGTCAGAGCTTATAATGAAATTCAGCTCCTTAGACTCACCTGTAAACTGTATTGTATATGATTCATTGCTTCCATGGGCGCTTGATGTGGCTAAGAAGTTCAACATCTATGGGGCTGTGTTCTTGACAAACTCAGCTTCAGTGTGCTCCATGTATTGGCATATCAATCATGGCCATATGAGTTTCCCTGTGACGCAAGAAAGTGGTGCGCCTTTGTTGATGCCTGGTCTTCCTCCACTTGATCTTCCTGACCTGCCAAGTTTTCTGTCACAGCCTGCGCCTCACTCGCCCTATTTAGCTTTGATCTTGGAAAAGTTTTCCAGGCTTCAAGAAAATGATTGGGTGTTCTGTAACTCTTTTGAAGAGTTGGAAAGTGAGCTGGTGAATGAAATGTTGGGACTTTGGCCCCTTGTGATGATTGGTCCAATGGTGCCATCAGCCTACCTGGACCAACAAATAGATGGAGACATAGCTTATGGAGCCAGTCTTTGGGTGCCAACTACTGACAAGTGCATCAAATGGCTAGATAAAAAACCACCTCAAAGTGTGATATACATATCTTTTGGAAGCATGGCAAACGTGGCAAACATTGCAGCAAAACAGGTTGAAGAAATTGCATGGGGCTTGAAAGCAAGTGATCAGCACTTCTTATGGGTTGTGAAAGAGTCTGAGAACAAATTGCCTGACGAGTTCCTGAACACAATAGGCGAAACAGGGTTGGTAGTGACATGGTGCAACCAACTACAAGTGCTAGCACATCCAGCTGTGGGATGTTTTATAACACACTGCGGATGGAATTCCACGTTGGAGGGATTGAGCCTAGGCGTGCCGATGGTGGGAGTGCCTCAGTGGAGTGATCAGCCGATGAATGCGAAGTTTGTGGAGGAGTTGTGGGGGGTTGGAGTGAGAGTTAAGAAGAATGAAGAGGGGCTTGTGAAGAAAGAAGAGTTAGAGATGTGTATAAGGGAAGTCATGGTGGGAGAGAGAAGTGATGAGATTAAAAGGAATGCCTTGAAATGGAGTGAGGCTGCAAAGAGAGCTGTTAGTGTAGAGGGTAAATCAGATAAGAACATCAATGAATTTATTGTGAAGCTCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016043 GO:0016143 GO:0016144 GO:0016740 GO:0016757 GO:0016758 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0033036 GO:0033037 GO:0033554 GO:0035251 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044424 GO:0044464 GO:0044550 GO:0045229 GO:0046527 GO:0047251 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0080043 GO:0080044 GO:0098542 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210

Pfam Domains

Protein Families

UDPGT

Protein Analysis

455

Amino Acids

50.53

Weight (kDa)

5.39

Isoelectric Point (pI)

46.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	269 - 429	4.4e-30	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003868)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24100
fragaria_vesca	FvH4_4g35050 FvH4_4g35051 FvH4_5g16480
malus_domestica	MD16G1086300.v1.1
prunus_persica	Prupe.1G260100_v2.0.a1 Prupe.1G260100_v2.0.a1 Prupe.5G178200_v2.0.a1
pyrus_communis	pycom16g07430
rosa_chinensis	RchiOBHm_Chr4g0444591 RchiOBHm_Chr4g0444641 RchiOBHm_Chr7g0179611
rosa_laevigata	RLG00000005337 RLG00000005817 RLG00000005819
rosa_multiflora	Rmu_sc0005329.1_g000025 Rmu_sc0015511.1_g000002 Rmu_sc0015511.1_g000004
rosa_roxburghii	Rroxscaffold_155G00443870 Rroxscaffold_3G00273600 Rroxscaffold_5G00385040 Rroxscaffold_5G00385100
rosa_rugosa	Rorug04G0354200 Rorug04G0354300 Rorug06G0426600
rosa_samantha	Rh4AG414100 Rh4CG440500 Rh4CG440800 Rh4DG421500 Rh7AG026000 Rh7CG027300
rosa_wichuraiana	Rw4G035580 Rw4G035590 Rw7G002090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	278, 1043
Acc36I	ACCTGC	1 cut(s)	525
AccB1I	GGYRCC	2 cut(s)	694, 757
AccB7I	CCANNNNNTGG	2 cut(s)	420, 753
AciI	CCGC	1 cut(s)	1053
AcoI	YGGCCR	1 cut(s)	436
AcsI	RAATTY	3 cut(s)	284, 1060, 1343
AcuI	CTGAAG	1 cut(s)	387
AfeI	AGCGCT	1 cut(s)	86
AfiI	CCNNNNNNNGG	6 cut(s)	50, 420, 753, 1031, 1100, 1281
AgsI	TTSAA	9 cut(s)	74, 170, 244, 367, 593, 626, 872, 892, 1279
AhdI	GACNNNNNGTC	1 cut(s)	107
AjnI	CCWGG	3 cut(s)	487, 584, 708
AjuI	GAANNNNNNNTTGG	4 cut(s)	641, 673, 1052, 1084
Alw21I	GWGCWC	2 cut(s)	36, 413
Alw26I	GTCTC	1 cut(s)	723
Aor51HI	AGCGCT	1 cut(s)	86
AoxI	GGCC	3 cut(s)	52, 436, 668
ApeKI	GCWGC	2 cut(s)	857, 1292
ApoI	RAATTY	3 cut(s)	284, 1060, 1343
AspA2I	CCTAGG	1 cut(s)	1084
AspLEI	GCGC	4 cut(s)	87, 346, 475, 544
AspS9I	GGNCC	3 cut(s)	669, 686, 712
AsuHPI	GGTGA	2 cut(s)	294, 658
AsuNHI	GCTAGC	1 cut(s)	1015
AvaII	GGWCC	2 cut(s)	686, 712
AvrII	CCTAGG	1 cut(s)	1084
BalI	TGGCCA	1 cut(s)	438
BanI	GGYRCC	2 cut(s)	694, 757
BbsI	GAAGAC	1 cut(s)	485
Bbv12I	GWGCWC	2 cut(s)	36, 413
BbvI	GCAGC	2 cut(s)	869, 1279
BccI	CCATC	6 cut(s)	152, 176, 706, 719, 1050, 1090
BciT130I	CCWGG	3 cut(s)	489, 586, 710
BclI	TGATCA	2 cut(s)	901, 1120
BcoDI	GTCTC	1 cut(s)	723
BfaI	CTAG	4 cut(s)	116, 788, 1016, 1085
BfoI	RGCGCY	2 cut(s)	88, 347
BfuAI	ACCTGC	1 cut(s)	525
BisI	GCNGC	2 cut(s)	858, 1293
BlnI	CCTAGG	1 cut(s)	1084
BlpI	GCTNAGC	2 cut(s)	81, 88
BlsI	GCNGC	2 cut(s)	859, 1294
Bme1390I	CCNGG	3 cut(s)	489, 586, 710
Bme18I	GGWCC	2 cut(s)	686, 712
BmeRI	GACNNNNNGTC	1 cut(s)	107
BmgT120I	GGNCC	3 cut(s)	669, 686, 712
BmiI	GGNNCC	4 cut(s)	671, 696, 745, 759
BmrFI	CCNGG	3 cut(s)	489, 586, 710
BmrI	ACTGGG	1 cut(s)	27
BmsI	GCATC	2 cut(s)	474, 786
BmtI	GCTAGC	1 cut(s)	1019
BmuI	ACTGGG	1 cut(s)	27
BpiI	GAAGAC	1 cut(s)	485
Bpu1102I	GCTNAGC	2 cut(s)	81, 88
BpuEI	CTTGAG	2 cut(s)	33, 241
BsaJI	CCNNGG	2 cut(s)	338, 1084
BsaXI	ACNNNNNCTCC	4 cut(s)	1139, 1158, 1169, 1188
Bsc4I	CCNNNNNNNGG	6 cut(s)	50, 420, 753, 1031, 1100, 1281
Bse1I	ACTGG	3 cut(s)	22, 208, 747
Bse3DI	GCAATG	2 cut(s)	329, 852
BseBI	CCWGG	3 cut(s)	489, 586, 710
BseDI	CCNNGG	2 cut(s)	338, 1084
BseGI	GGATG	4 cut(s)	144, 1021, 1040, 1061
BseLI	CCNNNNNNNGG	6 cut(s)	50, 420, 753, 1031, 1100, 1281
BseMI	GCAATG	2 cut(s)	329, 852
BseMII	CTCAG	4 cut(s)	192, 411, 924, 1124
BseNI	ACTGG	3 cut(s)	22, 208, 747
BseRI	GAGGAG	1 cut(s)	1163
BseXI	GCAGC	2 cut(s)	869, 1279
BshFI	GGCC	3 cut(s)	54, 438, 670
BshNI	GGYRCC	2 cut(s)	694, 757
BsiHKAI	GWGCWC	2 cut(s)	36, 413
BslFI	GGGAC	2 cut(s)	196, 675
BslI	CCNNNNNNNGG	6 cut(s)	50, 420, 753, 1031, 1100, 1281
BsmAI	GTCTC	1 cut(s)	723
BsmFI	GGGAC	2 cut(s)	196, 675
BsmI	GAATGC	2 cut(s)	1138, 1276
BsnI	GGCC	3 cut(s)	54, 438, 670
Bsp1286I	GDGCHC	2 cut(s)	36, 413
Bsp143I	GATC	4 cut(s)	505, 567, 901, 1120
Bsp1720I	GCTNAGC	2 cut(s)	81, 88
Bsp19I	CCATGG	1 cut(s)	338
BspACI	CCGC	1 cut(s)	1053
BspANI	GGCC	3 cut(s)	54, 438, 670
BspCNI	CTCAG	4 cut(s)	191, 410, 925, 1123
BspLI	GGNNCC	4 cut(s)	671, 696, 745, 759
BspMI	ACCTGC	1 cut(s)	525
BspOI	GCTAGC	1 cut(s)	1019
BspT107I	GGYRCC	2 cut(s)	694, 757
BsrDI	GCAATG	2 cut(s)	329, 852
BsrI	ACTGG	3 cut(s)	22, 208, 747
BssECI	CCNNGG	2 cut(s)	338, 1084
BssMI	GATC	4 cut(s)	505, 567, 901, 1120
BssT1I	CCWWGG	2 cut(s)	338, 1084
Bst2UI	CCWGG	3 cut(s)	489, 586, 710
Bst4CI	ACNGT	4 cut(s)	160, 250, 267, 314
Bst6I	CTCTTC	3 cut(s)	621, 1182, 1203
BstAPI	GCANNNNNTGC	1 cut(s)	854
BstC8I	GCNNGC	3 cut(s)	540, 1017, 1091
BstDEI	CTNAG	9 cut(s)	81, 88, 178, 232, 295, 357, 397, 933, 1110
BstDSI	CCRYGG	1 cut(s)	338
BstF5I	GGATG	4 cut(s)	144, 1021, 1040, 1061
BstH2I	RGCGCY	2 cut(s)	88, 347
BstHHI	GCGC	4 cut(s)	87, 346, 475, 544
BstKTI	GATC	4 cut(s)	508, 570, 904, 1123
BstMAI	GTCTC	1 cut(s)	723
BstMBI	GATC	4 cut(s)	505, 567, 901, 1120
BstMWI	GCNNNNNNNGC	6 cut(s)	550, 743, 845, 854, 1025, 1301
BstNI	CCWGG	3 cut(s)	489, 586, 710
BstNSI	RCATGY	1 cut(s)	26
BstSCI	CCNGG	3 cut(s)	487, 584, 708
BstV1I	GCAGC	2 cut(s)	869, 1279
BstV2I	GAAGAC	1 cut(s)	485
BstXI	CCANNNNNNTGG	1 cut(s)	17
BsuRI	GGCC	3 cut(s)	54, 438, 670
BtgI	CCRYGG	1 cut(s)	338
BtsCI	GGATG	4 cut(s)	144, 1021, 1040, 1061
BtsI	GCAGTG	1 cut(s)	1048
BtsIMutI	CAGTG	5 cut(s)	156, 263, 411, 1048, 1118
BveI	ACCTGC	1 cut(s)	525
Cac8I	GCNNGC	3 cut(s)	540, 1017, 1091
CfoI	GCGC	4 cut(s)	87, 346, 475, 544
Cfr13I	GGNCC	3 cut(s)	669, 686, 712
CseI	GACGC	1 cut(s)	466
CviAII	CATG	8 cut(s)	23, 339, 415, 434, 835, 882, 993, 1237
DdeI	CTNAG	9 cut(s)	81, 88, 178, 232, 295, 357, 397, 933, 1110
DpnI	GATC	4 cut(s)	507, 569, 903, 1122
DpnII	GATC	4 cut(s)	505, 567, 901, 1120
DriI	GACNNNNNGTC	1 cut(s)	107
EaeI	YGGCCR	1 cut(s)	436
Eam1104I	CTCTTC	3 cut(s)	621, 1182, 1203
Eam1105I	GACNNNNNGTC	1 cut(s)	107
EarI	CTCTTC	3 cut(s)	621, 1182, 1203
Eco130I	CCWWGG	2 cut(s)	338, 1084
Eco47I	GGWCC	2 cut(s)	686, 712
Eco47III	AGCGCT	1 cut(s)	86
Eco57I	CTGAAG	1 cut(s)	387
EcoRI	GAATTC	1 cut(s)	1060
EcoRII	CCWGG	3 cut(s)	487, 584, 708
EcoT14I	CCWWGG	2 cut(s)	338, 1084
ErhI	CCWWGG	2 cut(s)	338, 1084
FaeI	CATG	8 cut(s)	26, 342, 418, 437, 838, 885, 996, 1240
FalI	AAGNNNNNCTT	2 cut(s)	1179, 1211
FaqI	GGGAC	2 cut(s)	196, 675
FatI	CATG	8 cut(s)	22, 338, 414, 433, 834, 881, 992, 1236
FauNDI	CATATG	1 cut(s)	441
FbaI	TGATCA	2 cut(s)	901, 1120
Fnu4HI	GCNGC	2 cut(s)	858, 1293
FokI	GGATG	4 cut(s)	131, 1008, 1047, 1068
Fsp4HI	GCNGC	2 cut(s)	858, 1293
FspBI	CTAG	4 cut(s)	116, 788, 1016, 1085
GlaI	GCGC	4 cut(s)	86, 345, 474, 543
GluI	GCNGC	2 cut(s)	858, 1293
HaeII	RGCGCY	2 cut(s)	88, 347
HaeIII	GGCC	3 cut(s)	54, 438, 670
HgaI	GACGC	1 cut(s)	466
HhaI	GCGC	4 cut(s)	87, 346, 475, 544
Hin1II	CATG	8 cut(s)	26, 342, 418, 437, 838, 885, 996, 1240
Hin6I	GCGC	4 cut(s)	85, 344, 473, 542
HinP1I	GCGC	4 cut(s)	85, 344, 473, 542
HinfI	GANTC	4 cut(s)	236, 299, 326, 929
HphI	GGTGA	2 cut(s)	294, 658
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188I	TCNGA	5 cut(s)	181, 225, 271, 934, 1327
Hpy188III	TCNNGA	5 cut(s)	258, 388, 512, 593, 958
Hpy8I	GTNNAC	1 cut(s)	310
HpyAV	CCTTC	1 cut(s)	80
HpyCH4III	ACNGT	4 cut(s)	160, 250, 267, 314
HpyCH4IV	ACGT	2 cut(s)	843, 1067
HpyCH4V	TGCA	5 cut(s)	777, 857, 881, 999, 1295
HpyF10VI	GCNNNNNNNGC	6 cut(s)	550, 743, 845, 854, 1025, 1301
HpyF3I	CTNAG	9 cut(s)	81, 88, 178, 232, 295, 357, 397, 933, 1110
HpySE526I	ACGT	2 cut(s)	843, 1067
Hsp92II	CATG	8 cut(s)	26, 342, 418, 437, 838, 885, 996, 1240
HspAI	GCGC	4 cut(s)	85, 344, 473, 542
Ksp22I	TGATCA	2 cut(s)	901, 1120
Kzo9I	GATC	4 cut(s)	505, 567, 901, 1120
LmnI	GCTCC	3 cut(s)	296, 416, 743
Lsp1109I	GCAGC	2 cut(s)	869, 1279
LweI	GCATC	2 cut(s)	474, 786
MaeI	CTAG	4 cut(s)	116, 788, 1016, 1085
MaeII	ACGT	2 cut(s)	843, 1067
MaeIII	GTNAC	5 cut(s)	109, 454, 531, 614, 988
MalI	GATC	4 cut(s)	507, 569, 903, 1122
MboI	GATC	4 cut(s)	505, 567, 901, 1120
MboII	GAAGA	9 cut(s)	16, 485, 500, 638, 884, 1192, 1199, 1213, 1220
MhlI	GDGCHC	2 cut(s)	36, 413
MlsI	TGGCCA	1 cut(s)	438
MluCI	AATT	7 cut(s)	74, 165, 284, 876, 941, 1060, 1343
MluNI	TGGCCA	1 cut(s)	438
MlyI	GAGTC	3 cut(s)	230, 293, 938
MmeI	TCCRAC	4 cut(s)	142, 612, 1050, 1144
Mox20I	TGGCCA	1 cut(s)	438
MscI	TGGCCA	1 cut(s)	438
MseI	TTAA	2 cut(s)	1176, 1263
Msp20I	TGGCCA	1 cut(s)	438
MspA1I	CMGCKG	1 cut(s)	1028
MspR9I	CCNGG	3 cut(s)	489, 586, 710
Mva1269I	GAATGC	2 cut(s)	1138, 1276
MvaI	CCWGG	3 cut(s)	489, 586, 710
MwoI	GCNNNNNNNGC	6 cut(s)	550, 743, 845, 854, 1025, 1301
NcoI	CCATGG	1 cut(s)	338
NdeI	CATATG	1 cut(s)	441
NdeII	GATC	4 cut(s)	505, 567, 901, 1120
NheI	GCTAGC	1 cut(s)	1015
NlaIII	CATG	8 cut(s)	26, 342, 418, 437, 838, 885, 996, 1240
NlaIV	GGNNCC	4 cut(s)	671, 696, 745, 759
NmuCI	GTSAC	4 cut(s)	109, 454, 531, 988
NspI	RCATGY	1 cut(s)	26
PctI	GAATGC	2 cut(s)	1138, 1276
PfeI	GAWTC	1 cut(s)	326
PflMI	CCANNNNNTGG	2 cut(s)	420, 753
PkrI	GCNGC	2 cut(s)	859, 1294
PleI	GAGTC	3 cut(s)	230, 293, 937
PpsI	GAGTC	3 cut(s)	230, 293, 937
PsiI	TTATAA	2 cut(s)	278, 1043
Psp6I	CCWGG	3 cut(s)	487, 584, 708
PspGI	CCWGG	3 cut(s)	487, 584, 708
PspN4I	GGNNCC	4 cut(s)	671, 696, 745, 759
PspPI	GGNCC	3 cut(s)	669, 686, 712
PvuII	CAGCTG	1 cut(s)	1028
SaqAI	TTAA	2 cut(s)	1176, 1263
SatI	GCNGC	2 cut(s)	858, 1293
Sau3AI	GATC	4 cut(s)	505, 567, 901, 1120
Sau96I	GGNCC	3 cut(s)	669, 686, 712
SchI	GAGTC	3 cut(s)	230, 293, 938
ScrFI	CCNGG	3 cut(s)	489, 586, 710
SduI	GDGCHC	2 cut(s)	36, 413
SfaNI	GCATC	2 cut(s)	474, 786
SinI	GGWCC	2 cut(s)	686, 712
SmlI	CTYRAG	2 cut(s)	48, 256
SmoI	CTYRAG	2 cut(s)	48, 256
Sse9I	AATT	7 cut(s)	74, 165, 284, 876, 941, 1060, 1343
SsiI	CCGC	1 cut(s)	1053
SspMI	CTAG	4 cut(s)	116, 788, 1016, 1085
StyD4I	CCNGG	3 cut(s)	487, 584, 708
StyI	CCWWGG	2 cut(s)	338, 1084
TaaI	ACNGT	4 cut(s)	160, 250, 267, 314
TaiI	ACGT	2 cut(s)	846, 1070
TasI	AATT	7 cut(s)	74, 165, 284, 876, 941, 1060, 1343
TfiI	GAWTC	1 cut(s)	326
Tru1I	TTAA	2 cut(s)	1176, 1263
Tru9I	TTAA	2 cut(s)	1176, 1263
TscAI	CASTG	5 cut(s)	163, 270, 411, 1055, 1118
TseFI	GTSAC	4 cut(s)	109, 454, 531, 988
TseI	GCWGC	2 cut(s)	857, 1292
Tsp45I	GTSAC	4 cut(s)	109, 454, 531, 988
TspDTI	ATGAA	8 cut(s)	17, 207, 296, 318, 666, 1145, 1200, 1356
TspRI	CASTG	5 cut(s)	163, 270, 411, 1055, 1118
Van91I	CCANNNNNTGG	2 cut(s)	420, 753
VpaK11BI	GGWCC	2 cut(s)	686, 712
XapI	RAATTY	3 cut(s)	284, 1060, 1343
XceI	RCATGY	1 cut(s)	26
XcmI	CCANNNNNNNNNTGG	1 cut(s)	722
XmaJI	CCTAGG	1 cut(s)	1084
XspI	CTAG	4 cut(s)	116, 788, 1016, 1085

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.