Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003868

Physical Location & Seq

Genomic Coordinates Forward (+)

56349226 .. 56350295

Gene Structure 1070 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0426600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGTCAACCGGAGCCACAAAATGCAGCAAGATCCGCCACATTGTGAAGCTCCGCCAGTTGCTGCGGCGGTGGCGCAGCAAGGCCCGCATGTCGTCTGCTAGCCGCACACCGTCGGATGTCCCAGAGGGACACGTGGCGATCTGCGTCGGCCCCTACTGCACCAGATACGTCATGCCCGCGTCGTACCTGAACCACCCCGTGTTCAAGAAGCTCCTCGTACAAGCCGAGGAGGAGTACGGCTTCACTAACCAAGGCCCGCTGGCCATCCCATGCGACGAGTCACTCTTTGAAGAGGTGGTCCGGTACATTTCCCGATCGGAGTCCGGCGGGTCGGCCCGGTACTGCCACGTGGATGTCCGGAATAACTTCGATTTCTTGGCCGATTCCCGACCGTTGCTTCGTGGCTTTTCCGAGAAAACAATCTGCGGTTGTGGAAGTTATAATGGCACCAGCGATGCAGCTGCAGTGCATGAGCTCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016043 GO:0016143 GO:0016144 GO:0016740 GO:0016757 GO:0016758 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0033036 GO:0033037 GO:0033554 GO:0035251 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044424 GO:0044464 GO:0044550 GO:0045229 GO:0046527 GO:0047251 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0080043 GO:0080044 GO:0098542 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210

Pfam Domains

Protein Families

UDPGT

Protein Analysis

160

Amino Acids

17.84

Weight (kDa)

8.88

Isoelectric Point (pI)

56.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	16 - 103	4e-28	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003868)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24100
fragaria_vesca	FvH4_4g35050 FvH4_4g35051 FvH4_5g16480
malus_domestica	MD16G1086300.v1.1
prunus_persica	Prupe.1G260100_v2.0.a1 Prupe.1G260100_v2.0.a1 Prupe.5G178200_v2.0.a1
pyrus_communis	pycom16g07430
rosa_chinensis	RchiOBHm_Chr4g0444591 RchiOBHm_Chr4g0444641 RchiOBHm_Chr7g0179611
rosa_laevigata	RLG00000005337 RLG00000005817 RLG00000005819
rosa_multiflora	Rmu_sc0005329.1_g000025 Rmu_sc0015511.1_g000002 Rmu_sc0015511.1_g000004
rosa_roxburghii	Rroxscaffold_155G00443870 Rroxscaffold_3G00273600 Rroxscaffold_5G00385040 Rroxscaffold_5G00385100
rosa_rugosa	Rorug04G0354200 Rorug04G0354300 Rorug06G0426600
rosa_samantha	Rh4AG414100 Rh4CG440500 Rh4CG440800 Rh4DG421500 Rh7AG026000 Rh7CG027300
rosa_wichuraiana	Rw4G035580 Rw4G035590 Rw7G002090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	441
AccB1I	GGYRCC	1 cut(s)	446
AccII	CGCG	1 cut(s)	179
AccIII	TCCGGA	1 cut(s)	357
AclWI	GGATC	1 cut(s)	25
AcoI	YGGCCR	2 cut(s)	261, 378
AcvI	CACGTG	2 cut(s)	133, 349
AdeI	CACNNNGTG	2 cut(s)	43, 199
AfaI	GTAC	5 cut(s)	185, 219, 236, 305, 341
AflIII	ACRYGT	1 cut(s)	130
AgsI	TTSAA	2 cut(s)	205, 290
AluBI	AGCT	4 cut(s)	49, 211, 461, 475
AluI	AGCT	4 cut(s)	49, 211, 461, 475
Alw21I	GWGCWC	1 cut(s)	477
AlwI	GGATC	1 cut(s)	25
AlwNI	CAGNNNCTG	1 cut(s)	61
Aor13HI	TCCGGA	1 cut(s)	357
AoxI	GGCC	6 cut(s)	81, 148, 253, 261, 333, 378
ApeKI	GCWGC	5 cut(s)	24, 61, 75, 458, 461
ArsI	GACNNNNNNTTYG	2 cut(s)	381, 413
Asp700I	GAANNNNTTC	1 cut(s)	365
AspLEI	GCGC	1 cut(s)	75
AspS9I	GGNCC	5 cut(s)	82, 149, 254, 298, 334
AsuC2I	CCSGG	1 cut(s)	337
AsuNHI	GCTAGC	1 cut(s)	98
AvaII	GGWCC	1 cut(s)	298
BalI	TGGCCA	1 cut(s)	263
BanI	GGYRCC	1 cut(s)	446
BanII	GRGCYC	1 cut(s)	477
BbrPI	CACGTG	2 cut(s)	133, 349
Bbv12I	GWGCWC	1 cut(s)	477
BbvI	GCAGC	5 cut(s)	36, 48, 87, 448, 470
BccI	CCATC	1 cut(s)	272
BceAI	ACGGC	1 cut(s)	253
BcgI	CGANNNNNNTGC	2 cut(s)	443, 477
BcnI	CCSGG	1 cut(s)	337
BfaI	CTAG	2 cut(s)	99, 481
BfmI	CTRYAG	1 cut(s)	462
BisI	GCNGC	7 cut(s)	25, 62, 65, 76, 103, 459, 462
BlsI	GCNGC	7 cut(s)	26, 63, 66, 77, 104, 460, 463
Bme1390I	CCNGG	1 cut(s)	337
Bme18I	GGWCC	1 cut(s)	298
BmgT120I	GGNCC	5 cut(s)	82, 149, 254, 298, 334
BmiI	GGNNCC	3 cut(s)	13, 151, 448
BmrFI	CCNGG	1 cut(s)	337
BmsI	GCATC	1 cut(s)	445
BmtI	GCTAGC	1 cut(s)	102
BpuMI	CCSGG	1 cut(s)	337
BsaAI	YACGTR	2 cut(s)	133, 349
BsaJI	CCNNGG	2 cut(s)	225, 250
BsaWI	WCCGGW	3 cut(s)	8, 300, 357
Bse1I	ACTGG	1 cut(s)	55
BseAI	TCCGGA	1 cut(s)	357
BseDI	CCNNGG	2 cut(s)	225, 250
BseGI	GGATG	3 cut(s)	121, 264, 358
BseNI	ACTGG	1 cut(s)	55
BseRI	GAGGAG	4 cut(s)	203, 242, 245, 467
BseXI	GCAGC	5 cut(s)	36, 48, 87, 448, 470
BsgI	GTGCAG	1 cut(s)	142
Bsh1236I	CGCG	1 cut(s)	179
Bsh1285I	CGRYCG	2 cut(s)	317, 392
BshFI	GGCC	6 cut(s)	83, 150, 255, 263, 335, 380
BshNI	GGYRCC	1 cut(s)	446
BsiEI	CGRYCG	2 cut(s)	317, 392
BsiHKAI	GWGCWC	1 cut(s)	477
BsiSI	CCGG	5 cut(s)	9, 301, 324, 337, 358
BslFI	GGGAC	2 cut(s)	104, 141
BsmFI	GGGAC	2 cut(s)	104, 141
BsnI	GGCC	6 cut(s)	83, 150, 255, 263, 335, 380
Bsp1286I	GDGCHC	1 cut(s)	477
Bsp13I	TCCGGA	1 cut(s)	357
Bsp143I	GATC	3 cut(s)	30, 138, 314
BspANI	GGCC	6 cut(s)	83, 150, 255, 263, 335, 380
BspEI	TCCGGA	1 cut(s)	357
BspFNI	CGCG	1 cut(s)	179
BspLI	GGNNCC	3 cut(s)	13, 151, 448
BspMAI	CTGCAG	1 cut(s)	466
BspOI	GCTAGC	1 cut(s)	102
BspPI	GGATC	1 cut(s)	25
BspT107I	GGYRCC	1 cut(s)	446
BsrI	ACTGG	1 cut(s)	55
BssECI	CCNNGG	2 cut(s)	225, 250
BssMI	GATC	3 cut(s)	30, 138, 314
BssT1I	CCWWGG	1 cut(s)	250
Bst4CI	ACNGT	2 cut(s)	111, 393
Bst6I	CTCTTC	1 cut(s)	285
BstBAI	YACGTR	2 cut(s)	133, 349
BstC8I	GCNNGC	5 cut(s)	85, 100, 177, 257, 261
BstF5I	GGATG	3 cut(s)	121, 264, 358
BstFNI	CGCG	1 cut(s)	179
BstHHI	GCGC	1 cut(s)	75
BstKTI	GATC	3 cut(s)	33, 141, 317
BstMBI	GATC	3 cut(s)	30, 138, 314
BstMCI	CGRYCG	2 cut(s)	317, 392
BstMWI	GCNNNNNNNGC	4 cut(s)	33, 70, 84, 156
BstNSI	RCATGY	1 cut(s)	91
BstSCI	CCNGG	1 cut(s)	335
BstSFI	CTRYAG	1 cut(s)	462
BstUI	CGCG	1 cut(s)	179
BstV1I	GCAGC	5 cut(s)	36, 48, 87, 448, 470
BstX2I	RGATCY	1 cut(s)	30
BstYI	RGATCY	1 cut(s)	30
BsuRI	GGCC	6 cut(s)	83, 150, 255, 263, 335, 380
BtgZI	GCGATG	1 cut(s)	468
BtsCI	GGATG	3 cut(s)	121, 264, 358
BtsI	GCAGTG	1 cut(s)	471
BtsIMutI	CAGTG	1 cut(s)	471
Cac8I	GCNNGC	5 cut(s)	85, 100, 177, 257, 261
CaiI	CAGNNNCTG	1 cut(s)	61
CfoI	GCGC	1 cut(s)	75
Cfr13I	GGNCC	5 cut(s)	82, 149, 254, 298, 334
CseI	GACGC	2 cut(s)	133, 168
Csp6I	GTAC	5 cut(s)	184, 218, 235, 304, 340
CviAII	CATG	4 cut(s)	88, 172, 270, 470
CviQI	GTAC	5 cut(s)	184, 218, 235, 304, 340
DpnI	GATC	3 cut(s)	32, 140, 316
DpnII	GATC	3 cut(s)	30, 138, 314
DraIII	CACNNNGTG	2 cut(s)	43, 199
EaeI	YGGCCR	2 cut(s)	261, 378
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
EciI	GGCGGA	2 cut(s)	23, 41
Ecl136II	GAGCTC	1 cut(s)	475
Eco130I	CCWWGG	1 cut(s)	250
Eco24I	GRGCYC	1 cut(s)	477
Eco47I	GGWCC	1 cut(s)	298
Eco53kI	GAGCTC	1 cut(s)	475
Eco72I	CACGTG	2 cut(s)	133, 349
EcoICRI	GAGCTC	1 cut(s)	475
EcoT14I	CCWWGG	1 cut(s)	250
EcoT38I	GRGCYC	1 cut(s)	477
ErhI	CCWWGG	1 cut(s)	250
FaeI	CATG	4 cut(s)	91, 175, 273, 473
FaiI	YATR	5 cut(s)	89, 173, 271, 441, 471
FaqI	GGGAC	2 cut(s)	104, 141
FatI	CATG	4 cut(s)	87, 171, 269, 469
FauI	CCCGC	4 cut(s)	92, 184, 264, 320
Fnu4HI	GCNGC	7 cut(s)	25, 62, 65, 76, 103, 459, 462
FokI	GGATG	3 cut(s)	128, 251, 365
FriOI	GRGCYC	1 cut(s)	477
Fsp4HI	GCNGC	7 cut(s)	25, 62, 65, 76, 103, 459, 462
FspBI	CTAG	2 cut(s)	99, 481
GlaI	GCGC	1 cut(s)	74
GluI	GCNGC	7 cut(s)	25, 62, 65, 76, 103, 459, 462
HaeIII	GGCC	6 cut(s)	83, 150, 255, 263, 335, 380
HapII	CCGG	5 cut(s)	9, 301, 324, 337, 358
HgaI	GACGC	2 cut(s)	133, 168
HhaI	GCGC	1 cut(s)	75
Hin1II	CATG	4 cut(s)	91, 175, 273, 473
Hin6I	GCGC	1 cut(s)	73
HinP1I	GCGC	1 cut(s)	73
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	3 cut(s)	278, 320, 383
HpaII	CCGG	5 cut(s)	9, 301, 324, 337, 358
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	3 cut(s)	115, 319, 412
Hpy188III	TCNNGA	4 cut(s)	205, 312, 358, 387
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	4 cut(s)	115, 149, 184, 278
HpyCH4III	ACNGT	2 cut(s)	111, 393
HpyCH4IV	ACGT	3 cut(s)	132, 168, 348
HpyCH4V	TGCA	5 cut(s)	24, 159, 458, 464, 469
HpyF10VI	GCNNNNNNNGC	4 cut(s)	33, 70, 84, 156
HpySE526I	ACGT	3 cut(s)	132, 168, 348
Hsp92II	CATG	4 cut(s)	91, 175, 273, 473
HspAI	GCGC	1 cut(s)	73
Kpn2I	TCCGGA	1 cut(s)	357
Kzo9I	GATC	3 cut(s)	30, 138, 314
LmnI	GCTCC	4 cut(s)	11, 54, 216, 480
Lsp1109I	GCAGC	5 cut(s)	36, 48, 87, 448, 470
LweI	GCATC	1 cut(s)	445
MaeI	CTAG	2 cut(s)	99, 481
MaeII	ACGT	3 cut(s)	132, 168, 348
MaeIII	GTNAC	1 cut(s)	279
MalI	GATC	3 cut(s)	32, 140, 316
MboI	GATC	3 cut(s)	30, 138, 314
MboII	GAAGA	1 cut(s)	302
MflI	RGATCY	1 cut(s)	30
MhlI	GDGCHC	1 cut(s)	477
MlsI	TGGCCA	1 cut(s)	263
MluNI	TGGCCA	1 cut(s)	263
MlyI	GAGTC	2 cut(s)	287, 329
MmeI	TCCRAC	1 cut(s)	93
MnlI	CCTC	5 cut(s)	118, 220, 223, 224, 286
Mox20I	TGGCCA	1 cut(s)	263
MroI	TCCGGA	1 cut(s)	357
MroXI	GAANNNNTTC	1 cut(s)	365
MscI	TGGCCA	1 cut(s)	263
MslI	CAYNNNNRTG	1 cut(s)	351
Msp20I	TGGCCA	1 cut(s)	263
MspA1I	CMGCKG	2 cut(s)	259, 461
MspI	CCGG	5 cut(s)	9, 301, 324, 337, 358
MspR9I	CCNGG	1 cut(s)	337
MvnI	CGCG	1 cut(s)	179
MwoI	GCNNNNNNNGC	4 cut(s)	33, 70, 84, 156
NciI	CCSGG	1 cut(s)	337
NdeII	GATC	3 cut(s)	30, 138, 314
NheI	GCTAGC	1 cut(s)	98
NlaIII	CATG	4 cut(s)	91, 175, 273, 473
NlaIV	GGNNCC	3 cut(s)	13, 151, 448
NmeAIII	GCCGAG	1 cut(s)	250
NmuCI	GTSAC	1 cut(s)	279
NspI	RCATGY	1 cut(s)	91
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PdmI	GAANNNNTTC	1 cut(s)	365
PfeI	GAWTC	1 cut(s)	383
PkrI	GCNGC	7 cut(s)	26, 63, 66, 77, 104, 460, 463
Ple19I	CGATCG	1 cut(s)	317
PleI	GAGTC	2 cut(s)	286, 328
PmaCI	CACGTG	2 cut(s)	133, 349
PmlI	CACGTG	2 cut(s)	133, 349
PpsI	GAGTC	2 cut(s)	286, 328
Ppu21I	YACGTR	2 cut(s)	133, 349
PsiI	TTATAA	1 cut(s)	441
Psp124BI	GAGCTC	1 cut(s)	477
PspCI	CACGTG	2 cut(s)	133, 349
PspN4I	GGNNCC	3 cut(s)	13, 151, 448
PspPI	GGNCC	5 cut(s)	82, 149, 254, 298, 334
PstI	CTGCAG	1 cut(s)	466
PstNI	CAGNNNCTG	1 cut(s)	61
PsuI	RGATCY	1 cut(s)	30
PvuI	CGATCG	1 cut(s)	317
PvuII	CAGCTG	1 cut(s)	461
RsaI	GTAC	5 cut(s)	185, 219, 236, 305, 341
RsaNI	GTAC	5 cut(s)	184, 218, 235, 304, 340
RseI	CAYNNNNRTG	1 cut(s)	351
SacI	GAGCTC	1 cut(s)	477
SatI	GCNGC	7 cut(s)	25, 62, 65, 76, 103, 459, 462
Sau3AI	GATC	3 cut(s)	30, 138, 314
Sau96I	GGNCC	5 cut(s)	82, 149, 254, 298, 334
SchI	GAGTC	2 cut(s)	287, 329
ScrFI	CCNGG	1 cut(s)	337
SduI	GDGCHC	1 cut(s)	477
SetI	ASST	9 cut(s)	51, 135, 171, 189, 213, 297, 351, 463, 477
SfaNI	GCATC	1 cut(s)	445
SfcI	CTRYAG	1 cut(s)	462
SinI	GGWCC	1 cut(s)	298
SmiMI	CAYNNNNRTG	1 cut(s)	351
SspMI	CTAG	2 cut(s)	99, 481
SstI	GAGCTC	1 cut(s)	477
StyD4I	CCNGG	1 cut(s)	335
StyI	CCWWGG	1 cut(s)	250
TaaI	ACNGT	2 cut(s)	111, 393
TaiI	ACGT	3 cut(s)	135, 171, 351
TaqI	TCGA	1 cut(s)	369
TauI	GCSGC	2 cut(s)	67, 105
TfiI	GAWTC	1 cut(s)	383
TscAI	CASTG	1 cut(s)	471
TseFI	GTSAC	1 cut(s)	279
TseI	GCWGC	5 cut(s)	24, 61, 75, 458, 461
Tsp45I	GTSAC	1 cut(s)	279
TspRI	CASTG	1 cut(s)	471
VpaK11BI	GGWCC	1 cut(s)	298
XceI	RCATGY	1 cut(s)	91
XmnI	GAANNNNTTC	1 cut(s)	365
XspI	CTAG	2 cut(s)	99, 481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.