Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0003868

Physical Location & Seq

Genomic Coordinates Reverse (-)

15040595 .. 15043124

Gene Structure 2530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G178200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1356 bp

ATGCAGAACCAAAAAGGCCATGTCATTGTGCTCACATATCCTGCTCAGGGGCACATAAATCCACTCCTCCAGTTTGCTAAACGCTTAGCCTCCAAAGGCCTCAAGGCCACTCTAGCCACCACCCATTACACTGTCAAATCCATCCATGAAACCTCTGTAGGAGTTGAACCCATCTCTGATGGCTATGATGAAAGTGGATTCAAGCAAGCCCCAAGTGTAGAAGCCTACTTAGACTCATTCAAAACAGTTGGCTCAAGAACTTTATCAGAGCTCATACTCAAGTTCAGTGCCTCAGGCTCACCTGTCAACTGTATTGTGTATGATTCATTGCTTTCTTGGGCAATTGATGTGGCCAAAAAGTTCAATATCTATGGAGCTGTGTTCTTTACAAACTCAGCTTCTGTCTGCTCCATGTACTGGCATATCATTCATGGGCATCAGGCTTTTCCTGTGAAGCAAGAAACTGAGCCTTTGCTGATGCCTGGCCTTCCCCCACTTGCTCTTTCTGACTTGCCAAGTTTTCTTTCACAGCCTGCTCCTCACTCTCCCTATTTGGCTCTCATCTTGGAACAGTTTAGCAGTCTGGAGGAAAATGACTGGGTGTTCTGCAACTCTTTTGAAGAGTTGGAAAGTGAGCTCGTGAAGGAAATGCTGGGACTGTGGCCCCTGGTGATGATCGGTCCAATGGTGCCATCAAGCTACTTCGACCAAGAAATTGATGGAGACAGAGATTATGGAGCCAATCTTTGGAAGCCAACTACAGACCAGTGCATGAAATGGCTGGAGAAGAAACCACCTGAAAGTGTGATATACATTTCATTTGGAAGCATGGCAGATATTGCAGCTGAACAGGTTGAAGAAATTGCATGGGGCTTGAAAGCTAGTAATCAAAATTTTCTATGGGTTGTGAAAGAGCCTAAGACCAAATTGCCAGATGAATTCCTGAGCTCAATAGGTGAAACTGGTTTGGTGGTGACATGGTGCAACCAACTAGAGGTTCTAGCGCACCAGGCTGTGGGTTGTTTTATAACTCACTGCGGATGGAATTCCACGTTGGAGGGGTTGAGCCTAGGCGTGCCGATGGTGGCAATGCCACAGTGGAGCGACCAGCCAACTAATGCCAAATTTGTGGAGGAGTTGTGGGGAGTTGGGGTGAAAGTTAAGAAAAATGAAGAGGGAATTGTGAGTAGGGAAGAGCTAGAGATGTGTATAAGGGAAGTCATGCTTGGAGAAAGAAGTGGACAGATAAAAAAGAATTCCCTGAAATGGAGAGAGGCTGCAAAGAAAGCTGTTAGTATTGGTGGAACCTCAGATGACAACATCAATGAATTTATACTGAAGCTTCTTAGTGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016043 GO:0016143 GO:0016144 GO:0016740 GO:0016757 GO:0016758 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0033036 GO:0033037 GO:0033554 GO:0035251 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044424 GO:0044464 GO:0044550 GO:0045229 GO:0046527 GO:0047251 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0080043 GO:0080044 GO:0098542 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210

Pfam Domains

Protein Families

UDPGT

Protein Analysis

452

Amino Acids

50.07

Weight (kDa)

5.1

Isoelectric Point (pI)

41.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003868)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24100
fragaria_vesca	FvH4_4g35050 FvH4_4g35051 FvH4_5g16480
malus_domestica	MD16G1086300.v1.1
prunus_persica	Prupe.1G260100_v2.0.a1 Prupe.1G260100_v2.0.a1 Prupe.5G178200_v2.0.a1
pyrus_communis	pycom16g07430
rosa_chinensis	RchiOBHm_Chr4g0444591 RchiOBHm_Chr4g0444641 RchiOBHm_Chr7g0179611
rosa_laevigata	RLG00000005337 RLG00000005817 RLG00000005819
rosa_multiflora	Rmu_sc0005329.1_g000025 Rmu_sc0015511.1_g000002 Rmu_sc0015511.1_g000004
rosa_roxburghii	Rroxscaffold_155G00443870 Rroxscaffold_3G00273600 Rroxscaffold_5G00385040 Rroxscaffold_5G00385100
rosa_rugosa	Rorug04G0354200 Rorug04G0354300 Rorug06G0426600
rosa_samantha	Rh4AG414100 Rh4CG440500 Rh4CG440800 Rh4DG421500 Rh7AG026000 Rh7CG027300
rosa_wichuraiana	Rw4G035580 Rw4G035590 Rw7G002090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1028
AccB1I	GGYRCC	1 cut(s)	688
AccB7I	CCANNNNNTGG	3 cut(s)	417, 747, 1015
AciI	CCGC	1 cut(s)	1038
AcoI	YGGCCR	1 cut(s)	351
AcsI	RAATTY	6 cut(s)	892, 938, 1045, 1124, 1255, 1328
AfaI	GTAC	1 cut(s)	416
AfiI	CCNNNNNNNGG	6 cut(s)	47, 417, 747, 994, 1015, 1266
AgsI	TTSAA	7 cut(s)	167, 202, 241, 364, 620, 857, 877
AjnI	CCWGG	3 cut(s)	481, 666, 1008
AjuI	GAANNNNNNNTTGG	8 cut(s)	508, 540, 981, 1013, 1037, 1069, 1209, 1241
Alw21I	GWGCWC	4 cut(s)	33, 273, 639, 950
Alw26I	GTCTC	1 cut(s)	717
AlwNI	CAGNNNCTG	1 cut(s)	401
AoxI	GGCC	6 cut(s)	16, 97, 105, 351, 484, 662
ApeKI	GCWGC	2 cut(s)	842, 1277
ApoI	RAATTY	6 cut(s)	892, 938, 1045, 1124, 1255, 1328
AspA2I	CCTAGG	1 cut(s)	1069
AspLEI	GCGC	1 cut(s)	1006
AspS9I	GGNCC	2 cut(s)	663, 680
AsuHPI	GGTGA	5 cut(s)	291, 682, 968, 985, 1165
AvaII	GGWCC	1 cut(s)	680
AvrII	CCTAGG	1 cut(s)	1069
AxyI	CCTNAGG	1 cut(s)	292
BaeGI	GKGCMC	1 cut(s)	54
BalI	TGGCCA	1 cut(s)	353
BanI	GGYRCC	1 cut(s)	688
BanII	GRGCYC	3 cut(s)	273, 639, 950
BauI	CACGAG	1 cut(s)	638
Bbv12I	GWGCWC	4 cut(s)	33, 273, 639, 950
BbvI	GCAGC	2 cut(s)	854, 1264
BccI	CCATC	7 cut(s)	149, 173, 179, 700, 713, 1035, 1075
BciT130I	CCWGG	3 cut(s)	483, 668, 1010
BcoDI	GTCTC	1 cut(s)	717
BfaI	CTAG	6 cut(s)	113, 882, 992, 1001, 1070, 1199
BfmI	CTRYAG	2 cut(s)	156, 759
BisI	GCNGC	2 cut(s)	843, 1278
BlnI	CCTAGG	1 cut(s)	1069
BlpI	GCTNAGC	1 cut(s)	85
BlsI	GCNGC	2 cut(s)	844, 1279
Bme1390I	CCNGG	3 cut(s)	483, 668, 1010
Bme18I	GGWCC	1 cut(s)	680
BmgT120I	GGNCC	2 cut(s)	663, 680
BmiI	GGNNCC	4 cut(s)	665, 690, 739, 1306
BmrFI	CCNGG	3 cut(s)	483, 668, 1010
BmrI	ACTGGG	1 cut(s)	607
BmsI	GCATC	2 cut(s)	445, 468
BmuI	ACTGGG	1 cut(s)	607
BpmI	CTGGAG	3 cut(s)	53, 605, 803
Bpu10I	CCTNAGC	2 cut(s)	45, 944
Bpu1102I	GCTNAGC	1 cut(s)	85
BpuEI	CTTGAG	3 cut(s)	86, 238, 263
BsaJI	CCNNGG	2 cut(s)	666, 1069
BsaXI	ACNNNNNCTCC	4 cut(s)	1124, 1137, 1154, 1167
Bsc4I	CCNNNNNNNGG	6 cut(s)	47, 417, 747, 994, 1015, 1266
Bse1I	ACTGG	5 cut(s)	70, 422, 602, 766, 967
Bse21I	CCTNAGG	1 cut(s)	292
Bse3DI	GCAATG	2 cut(s)	326, 1095
BseBI	CCWGG	3 cut(s)	483, 668, 1010
BseDI	CCNNGG	2 cut(s)	666, 1069
BseGI	GGATG	2 cut(s)	141, 1046
BseLI	CCNNNNNNNGG	6 cut(s)	47, 417, 747, 994, 1015, 1266
BseMI	GCAATG	2 cut(s)	326, 1095
BseMII	CTCAG	6 cut(s)	59, 306, 408, 456, 935, 1323
BseNI	ACTGG	5 cut(s)	70, 422, 602, 766, 967
BseRI	GAGGAG	3 cut(s)	56, 528, 1148
BseSI	GKGCMC	1 cut(s)	54
BseXI	GCAGC	2 cut(s)	854, 1264
BseYI	CCCAGC	1 cut(s)	652
BshFI	GGCC	6 cut(s)	18, 99, 107, 353, 486, 664
BshNI	GGYRCC	1 cut(s)	688
BsiHKAI	GWGCWC	4 cut(s)	33, 273, 639, 950
BslFI	GGGAC	1 cut(s)	669
BslI	CCNNNNNNNGG	6 cut(s)	47, 417, 747, 994, 1015, 1266
BsmAI	GTCTC	1 cut(s)	717
BsmFI	GGGAC	1 cut(s)	669
BsnI	GGCC	6 cut(s)	18, 99, 107, 353, 486, 664
Bsp1286I	GDGCHC	5 cut(s)	33, 54, 273, 639, 950
Bsp143I	GATC	1 cut(s)	675
Bsp1720I	GCTNAGC	1 cut(s)	85
BspACI	CCGC	1 cut(s)	1038
BspANI	GGCC	6 cut(s)	18, 99, 107, 353, 486, 664
BspCNI	CTCAG	6 cut(s)	58, 305, 407, 457, 936, 1322
BspLI	GGNNCC	4 cut(s)	665, 690, 739, 1306
BspQI	GCTCTTC	1 cut(s)	1188
BspT107I	GGYRCC	1 cut(s)	688
BsrDI	GCAATG	2 cut(s)	326, 1095
BsrI	ACTGG	5 cut(s)	70, 422, 602, 766, 967
BssECI	CCNNGG	2 cut(s)	666, 1069
BssMI	GATC	1 cut(s)	675
BssSI	CACGAG	1 cut(s)	638
BssT1I	CCWWGG	1 cut(s)	1069
Bst2BI	CACGAG	1 cut(s)	638
Bst2UI	CCWGG	3 cut(s)	483, 668, 1010
Bst4CI	ACNGT	6 cut(s)	133, 247, 311, 573, 660, 1098
Bst6I	CTCTTC	3 cut(s)	615, 1167, 1188
BstAPI	GCANNNNNTGC	1 cut(s)	839
BstC8I	GCNNGC	3 cut(s)	207, 534, 1076
BstF5I	GGATG	2 cut(s)	141, 1046
BstHHI	GCGC	1 cut(s)	1006
BstKTI	GATC	1 cut(s)	678
BstMAI	GTCTC	1 cut(s)	717
BstMBI	GATC	1 cut(s)	675
BstMWI	GCNNNNNNNGC	4 cut(s)	113, 839, 1010, 1286
BstNI	CCWGG	3 cut(s)	483, 668, 1010
BstSCI	CCNGG	3 cut(s)	481, 666, 1008
BstSFI	CTRYAG	2 cut(s)	156, 759
BstSLI	GKGCMC	1 cut(s)	54
BstV1I	GCAGC	2 cut(s)	854, 1264
BstXI	CCANNNNNNTGG	1 cut(s)	1129
Bsu36I	CCTNAGG	1 cut(s)	292
BsuRI	GGCC	6 cut(s)	18, 99, 107, 353, 486, 664
BtsCI	GGATG	2 cut(s)	141, 1046
BtsI	GCAGTG	1 cut(s)	1033
BtsIMutI	CAGTG	5 cut(s)	129, 292, 773, 1033, 1103
Cac8I	GCNNGC	3 cut(s)	207, 534, 1076
CaiI	CAGNNNCTG	1 cut(s)	401
CfoI	GCGC	1 cut(s)	1006
Cfr13I	GGNCC	2 cut(s)	663, 680
Csp6I	GTAC	1 cut(s)	415
CspCI	CAANNNNNGTGG	2 cut(s)	330, 365
CviAII	CATG	9 cut(s)	20, 146, 412, 431, 772, 829, 867, 978, 1222
CviQI	GTAC	1 cut(s)	415
DpnI	GATC	1 cut(s)	677
DpnII	GATC	1 cut(s)	675
EaeI	YGGCCR	1 cut(s)	351
Eam1104I	CTCTTC	3 cut(s)	615, 1167, 1188
EarI	CTCTTC	3 cut(s)	615, 1167, 1188
Ecl136II	GAGCTC	3 cut(s)	271, 637, 948
Eco130I	CCWWGG	1 cut(s)	1069
Eco147I	AGGCCT	1 cut(s)	99
Eco24I	GRGCYC	3 cut(s)	273, 639, 950
Eco47I	GGWCC	1 cut(s)	680
Eco53kI	GAGCTC	3 cut(s)	271, 637, 948
Eco81I	CCTNAGG	1 cut(s)	292
EcoICRI	GAGCTC	3 cut(s)	271, 637, 948
EcoRI	GAATTC	3 cut(s)	938, 1045, 1255
EcoRII	CCWGG	3 cut(s)	481, 666, 1008
EcoT14I	CCWWGG	1 cut(s)	1069
EcoT38I	GRGCYC	3 cut(s)	273, 639, 950
ErhI	CCWWGG	1 cut(s)	1069
FaeI	CATG	9 cut(s)	23, 149, 415, 434, 775, 832, 870, 981, 1225
FalI	AAGNNNNNCTT	2 cut(s)	1209, 1241
FaqI	GGGAC	1 cut(s)	669
FatI	CATG	9 cut(s)	19, 145, 411, 430, 771, 828, 866, 977, 1221
Fnu4HI	GCNGC	2 cut(s)	843, 1278
FokI	GGATG	2 cut(s)	128, 1053
FriOI	GRGCYC	3 cut(s)	273, 639, 950
Fsp4HI	GCNGC	2 cut(s)	843, 1278
FspBI	CTAG	6 cut(s)	113, 882, 992, 1001, 1070, 1199
GlaI	GCGC	1 cut(s)	1005
GluI	GCNGC	2 cut(s)	843, 1278
GsaI	CCCAGC	1 cut(s)	656
GsuI	CTGGAG	3 cut(s)	53, 605, 803
HaeIII	GGCC	6 cut(s)	18, 99, 107, 353, 486, 664
HhaI	GCGC	1 cut(s)	1006
Hin1II	CATG	9 cut(s)	23, 149, 415, 434, 775, 832, 870, 981, 1225
Hin6I	GCGC	1 cut(s)	1004
HinP1I	GCGC	1 cut(s)	1004
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HindIII	AAGCTT	1 cut(s)	1340
HinfI	GANTC	3 cut(s)	198, 233, 323
HphI	GGTGA	5 cut(s)	291, 682, 968, 985, 1165
Hpy166II	GTNNAC	2 cut(s)	307, 1241
Hpy188I	TCNGA	4 cut(s)	178, 268, 508, 1312
Hpy188III	TCNNGA	4 cut(s)	255, 584, 640, 943
Hpy8I	GTNNAC	2 cut(s)	307, 1241
HpyAV	CCTTC	2 cut(s)	497, 637
HpyCH4III	ACNGT	6 cut(s)	133, 247, 311, 573, 660, 1098
HpyCH4IV	ACGT	1 cut(s)	1052
HpyCH4V	TGCA	7 cut(s)	4, 609, 771, 842, 866, 984, 1280
HpyF10VI	GCNNNNNNNGC	4 cut(s)	113, 839, 1010, 1286
HpySE526I	ACGT	1 cut(s)	1052
Hsp92II	CATG	9 cut(s)	23, 149, 415, 434, 775, 832, 870, 981, 1225
HspAI	GCGC	1 cut(s)	1004
Kzo9I	GATC	1 cut(s)	675
LguI	GCTCTTC	1 cut(s)	1188
LmnI	GCTCC	5 cut(s)	374, 413, 541, 737, 1101
Lsp1109I	GCAGC	2 cut(s)	854, 1264
LweI	GCATC	2 cut(s)	445, 468
MaeI	CTAG	6 cut(s)	113, 882, 992, 1001, 1070, 1199
MaeII	ACGT	1 cut(s)	1052
MaeIII	GTNAC	1 cut(s)	973
MalI	GATC	1 cut(s)	677
MboI	GATC	1 cut(s)	675
MboII	GAAGA	5 cut(s)	632, 799, 869, 1184, 1205
MfeI	CAATTG	1 cut(s)	342
MhlI	GDGCHC	5 cut(s)	33, 54, 273, 639, 950
MlsI	TGGCCA	1 cut(s)	353
MluNI	TGGCCA	1 cut(s)	353
MlyI	GAGTC	1 cut(s)	227
MmeI	TCCRAC	2 cut(s)	606, 1035
Mox20I	TGGCCA	1 cut(s)	353
MscI	TGGCCA	1 cut(s)	353
MseI	TTAA	1 cut(s)	1161
Msp20I	TGGCCA	1 cut(s)	353
MspA1I	CMGCKG	1 cut(s)	845
MspR9I	CCNGG	3 cut(s)	483, 668, 1010
MunI	CAATTG	1 cut(s)	342
MvaI	CCWGG	3 cut(s)	483, 668, 1010
MwoI	GCNNNNNNNGC	4 cut(s)	113, 839, 1010, 1286
NdeII	GATC	1 cut(s)	675
NlaIII	CATG	9 cut(s)	23, 149, 415, 434, 775, 832, 870, 981, 1225
NlaIV	GGNNCC	4 cut(s)	665, 690, 739, 1306
NmuCI	GTSAC	1 cut(s)	973
PceI	AGGCCT	1 cut(s)	99
PciSI	GCTCTTC	1 cut(s)	1188
PfeI	GAWTC	2 cut(s)	198, 323
PflMI	CCANNNNNTGG	3 cut(s)	417, 747, 1015
PkrI	GCNGC	2 cut(s)	844, 1279
PleI	GAGTC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	227
PsiI	TTATAA	1 cut(s)	1028
Psp124BI	GAGCTC	3 cut(s)	273, 639, 950
Psp6I	CCWGG	3 cut(s)	481, 666, 1008
PspFI	CCCAGC	1 cut(s)	652
PspGI	CCWGG	3 cut(s)	481, 666, 1008
PspN4I	GGNNCC	4 cut(s)	665, 690, 739, 1306
PspPI	GGNCC	2 cut(s)	663, 680
PstNI	CAGNNNCTG	1 cut(s)	401
PvuII	CAGCTG	1 cut(s)	845
RsaI	GTAC	1 cut(s)	416
RsaNI	GTAC	1 cut(s)	415
SacI	GAGCTC	3 cut(s)	273, 639, 950
SapI	GCTCTTC	1 cut(s)	1188
SaqAI	TTAA	1 cut(s)	1161
SatI	GCNGC	2 cut(s)	843, 1278
Sau3AI	GATC	1 cut(s)	675
Sau96I	GGNCC	2 cut(s)	663, 680
SchI	GAGTC	1 cut(s)	227
ScrFI	CCNGG	3 cut(s)	483, 668, 1010
SduI	GDGCHC	5 cut(s)	33, 54, 273, 639, 950
SfaNI	GCATC	2 cut(s)	445, 468
SfcI	CTRYAG	2 cut(s)	156, 759
SinI	GGWCC	1 cut(s)	680
SmlI	CTYRAG	3 cut(s)	101, 253, 278
SmoI	CTYRAG	3 cut(s)	101, 253, 278
SseBI	AGGCCT	1 cut(s)	99
SsiI	CCGC	1 cut(s)	1038
SspMI	CTAG	6 cut(s)	113, 882, 992, 1001, 1070, 1199
SstI	GAGCTC	3 cut(s)	273, 639, 950
StuI	AGGCCT	1 cut(s)	99
StyD4I	CCNGG	3 cut(s)	481, 666, 1008
StyI	CCWWGG	1 cut(s)	1069
TaaI	ACNGT	6 cut(s)	133, 247, 311, 573, 660, 1098
TaiI	ACGT	1 cut(s)	1055
TaqI	TCGA	1 cut(s)	705
TaqII	GACCGA	1 cut(s)	668
TatI	WGTACW	1 cut(s)	414
TfiI	GAWTC	2 cut(s)	198, 323
Tru1I	TTAA	1 cut(s)	1161
Tru9I	TTAA	1 cut(s)	1161
TscAI	CASTG	5 cut(s)	136, 292, 773, 1040, 1103
TseFI	GTSAC	1 cut(s)	973
TseI	GCWGC	2 cut(s)	842, 1277
Tsp45I	GTSAC	1 cut(s)	973
TspDTI	ATGAA	9 cut(s)	162, 204, 315, 419, 788, 807, 951, 1185, 1341
TspRI	CASTG	5 cut(s)	136, 292, 773, 1040, 1103
Van91I	CCANNNNNTGG	3 cut(s)	417, 747, 1015
VpaK11BI	GGWCC	1 cut(s)	680
XapI	RAATTY	6 cut(s)	892, 938, 1045, 1124, 1255, 1328
XcmI	CCANNNNNNNNNTGG	1 cut(s)	716
XmaJI	CCTAGG	1 cut(s)	1069
XspI	CTAG	6 cut(s)	113, 882, 992, 1001, 1070, 1199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.