Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003868

Physical Location & Seq

Genomic Coordinates Forward (+)

65341596 .. 65343745

Gene Structure 2150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00273600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGAAGAACCAAAAAACTGGGCATGTGATTGTGCTCACATATCCAGCTCAAGGCCACATAAACCCTCTCCTTCAATTTGCTAAGCGCTTAGCCTCCAAAGGACTCAAGGTCACTCTAGCCACCACCCCTTATACTCTCAAATCCATCCACTCAACCACTGTTGGAATTGAACCAATCTCAGATGGATATGATGAAAGTGGATTTAGCCAATCCCCTAGTGTTCAAGCCTACTTAGACTCATTCAAAACAGTTGGCTCAAGAACACTATCAGAGCTTATACTCAAATTCAGCTCCTCAGGCTCACCTGTCAACTGTATTGTATATGACTCATTGCTTCCATGGGCACTTGATGTGGCTAAAAAGTTCAGCATCTATGGAGCTGTGTTCTTGACAAACTCAGCTTCAGTGTGCTCCTTTTATTGGCATATCAATCATGGCCGTCTGAGTTTCCCTGTGACGCAAGAAAGCGGTGCGCCTTTGTTGATGCCTGGCCTTCCTCCACTTGATCTTCCTGACCTGCCAAGTTTCCTATCACAGCCTGCGCCTCACTCGCCTTATTTGGCTTTGATCTTGGAACAGTTTGTCAGCCTTGAAGAAAATGATTGGGTTTTCTGCAACTCCTTTGAAGAATTGGAAAGTGAGCTGGTGAATGAAATGTTGGGACTTTGGCCCATTTTGATGATCGGTCCAATGGTGCCATCAGCCTACTTGGATCAACAAATTGATGGGGACAGAGGTTATGGAGCCAGTCTTTGGGAGCCAACTACAGACAAGTGCATCAAATGGCTGGATAAAAAACCACCTCAAAGTGTGATATACATATCTTTTGGAAGCATGGCAAACATTGCAGCAAAACAGGTTGAAGAAATTGCATGGGGCTTGAAAGCAAGTGATCAGCACTTCCTTTGGGTTGTGAAAGATTCCGAGAACAAATTGCCTGATGAGTTCCTGAATGCAATAGGCGAAACAGGGTTGGTGGTGACATGGTGCAACCAACTAGAGGTGCTAGCACATCCAGCTGTGGGGTGTTTTATAACGCACTGCGGATGGAATTCCACGTTGGAGGGATTGAGCCTAGGCGTGCCGATGGTGGGAGTGCCTCAGTGGAGTGATCAGCCAACGAATGCCAAGTTTGTGGAGGAGTTGTGGGGGTTGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016043 GO:0016143 GO:0016144 GO:0016740 GO:0016757 GO:0016758 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0033036 GO:0033037 GO:0033554 GO:0035251 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044424 GO:0044464 GO:0044550 GO:0045229 GO:0046527 GO:0047251 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0080043 GO:0080044 GO:0098542 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210

Pfam Domains

Protein Families

UDPGT

Protein Analysis

386

Amino Acids

42.54

Weight (kDa)

4.89

Isoelectric Point (pI)

44.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_N	PF26168	9 - 55	1.2e-06	Glycosyltransferase, N-terminal domain
UDPGT	PF00201	268 - 384	4.1e-27	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003868)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24100
fragaria_vesca	FvH4_4g35050 FvH4_4g35051 FvH4_5g16480
malus_domestica	MD16G1086300.v1.1
prunus_persica	Prupe.1G260100_v2.0.a1 Prupe.1G260100_v2.0.a1 Prupe.5G178200_v2.0.a1
pyrus_communis	pycom16g07430
rosa_chinensis	RchiOBHm_Chr4g0444591 RchiOBHm_Chr4g0444641 RchiOBHm_Chr7g0179611
rosa_laevigata	RLG00000005337 RLG00000005817 RLG00000005819
rosa_multiflora	Rmu_sc0005329.1_g000025 Rmu_sc0015511.1_g000002 Rmu_sc0015511.1_g000004
rosa_roxburghii	Rroxscaffold_155G00443870 Rroxscaffold_3G00273600 Rroxscaffold_5G00385040 Rroxscaffold_5G00385100
rosa_rugosa	Rorug04G0354200 Rorug04G0354300 Rorug06G0426600
rosa_samantha	Rh4AG414100 Rh4CG440500 Rh4CG440800 Rh4DG421500 Rh7AG026000 Rh7CG027300
rosa_wichuraiana	Rw4G035580 Rw4G035590 Rw7G002090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1034
Acc36I	ACCTGC	1 cut(s)	525
AccB1I	GGYRCC	1 cut(s)	694
AccB7I	CCANNNNNTGG	1 cut(s)	753
AciI	CCGC	2 cut(s)	468, 1044
AclWI	GGATC	1 cut(s)	720
AcoI	YGGCCR	1 cut(s)	436
AcsI	RAATTY	2 cut(s)	284, 1051
AcuI	CTGAAG	1 cut(s)	387
AfeI	AGCGCT	1 cut(s)	86
AfiI	CCNNNNNNNGG	6 cut(s)	50, 420, 753, 1000, 1022, 1091
AgsI	TTSAA	8 cut(s)	74, 170, 224, 244, 593, 626, 863, 883
AhdI	GACNNNNNGTC	1 cut(s)	107
AjnI	CCWGG	1 cut(s)	487
AjuI	GAANNNNNNNTTGG	4 cut(s)	641, 673, 1043, 1075
AluBI	AGCT	7 cut(s)	47, 274, 291, 380, 401, 643, 1019
AluI	AGCT	7 cut(s)	47, 274, 291, 380, 401, 643, 1019
Alw21I	GWGCWC	2 cut(s)	36, 413
AlwI	GGATC	1 cut(s)	720
Aor51HI	AGCGCT	1 cut(s)	86
AoxI	GGCC	4 cut(s)	52, 436, 490, 668
ApeKI	GCWGC	1 cut(s)	848
ApoI	RAATTY	2 cut(s)	284, 1051
AspA2I	CCTAGG	1 cut(s)	1075
AspLEI	GCGC	3 cut(s)	87, 475, 544
AspS9I	GGNCC	2 cut(s)	669, 686
AsuHPI	GGTGA	3 cut(s)	294, 658, 991
AsuNHI	GCTAGC	1 cut(s)	1006
AvaII	GGWCC	1 cut(s)	686
AvrII	CCTAGG	1 cut(s)	1075
AxyI	CCTNAGG	1 cut(s)	295
BaeGI	GKGCMC	1 cut(s)	346
BanI	GGYRCC	1 cut(s)	694
Bbv12I	GWGCWC	2 cut(s)	36, 413
BbvI	GCAGC	1 cut(s)	860
BccI	CCATC	6 cut(s)	152, 176, 706, 719, 1041, 1081
BceAI	ACGGC	1 cut(s)	423
BciT130I	CCWGG	1 cut(s)	489
BclI	TGATCA	2 cut(s)	892, 1111
BfaI	CTAG	5 cut(s)	116, 216, 998, 1007, 1076
BfmI	CTRYAG	1 cut(s)	765
BfoI	RGCGCY	1 cut(s)	88
BfuAI	ACCTGC	1 cut(s)	525
BisI	GCNGC	1 cut(s)	849
BlnI	CCTAGG	1 cut(s)	1075
BlpI	GCTNAGC	2 cut(s)	81, 88
BlsI	GCNGC	1 cut(s)	850
Bme1390I	CCNGG	1 cut(s)	489
Bme18I	GGWCC	1 cut(s)	686
BmeRI	GACNNNNNGTC	1 cut(s)	107
BmgT120I	GGNCC	2 cut(s)	669, 686
BmiI	GGNNCC	3 cut(s)	696, 745, 759
BmrFI	CCNGG	1 cut(s)	489
BmrI	ACTGGG	1 cut(s)	27
BmsI	GCATC	3 cut(s)	378, 474, 786
BmtI	GCTAGC	1 cut(s)	1010
BmuI	ACTGGG	1 cut(s)	27
Bpu1102I	GCTNAGC	2 cut(s)	81, 88
BpuEI	CTTGAG	3 cut(s)	33, 89, 241
BsaJI	CCNNGG	2 cut(s)	338, 1075
BsaXI	ACNNNNNCTCC	2 cut(s)	1130, 1160
Bsc4I	CCNNNNNNNGG	6 cut(s)	50, 420, 753, 1000, 1022, 1091
Bse1I	ACTGG	2 cut(s)	22, 747
Bse21I	CCTNAGG	1 cut(s)	295
Bse3DI	GCAATG	2 cut(s)	329, 843
BseBI	CCWGG	1 cut(s)	489
BseDI	CCNNGG	2 cut(s)	338, 1075
BseGI	GGATG	3 cut(s)	144, 1012, 1052
BseLI	CCNNNNNNNGG	6 cut(s)	50, 420, 753, 1000, 1022, 1091
BseMI	GCAATG	2 cut(s)	329, 843
BseMII	CTCAG	5 cut(s)	192, 309, 411, 434, 1115
BseNI	ACTGG	2 cut(s)	22, 747
BseRI	GAGGAG	2 cut(s)	283, 1154
BseSI	GKGCMC	1 cut(s)	346
BseXI	GCAGC	1 cut(s)	860
BshFI	GGCC	4 cut(s)	54, 438, 492, 670
BshNI	GGYRCC	1 cut(s)	694
BsiHKAI	GWGCWC	2 cut(s)	36, 413
BslFI	GGGAC	2 cut(s)	675, 743
BslI	CCNNNNNNNGG	6 cut(s)	50, 420, 753, 1000, 1022, 1091
BsmFI	GGGAC	2 cut(s)	675, 743
BsmI	GAATGC	2 cut(s)	958, 1129
BsnI	GGCC	4 cut(s)	54, 438, 492, 670
Bsp1286I	GDGCHC	3 cut(s)	36, 346, 413
Bsp143I	GATC	6 cut(s)	505, 567, 681, 712, 892, 1111
Bsp1720I	GCTNAGC	2 cut(s)	81, 88
Bsp19I	CCATGG	1 cut(s)	338
BspACI	CCGC	2 cut(s)	468, 1044
BspANI	GGCC	4 cut(s)	54, 438, 492, 670
BspCNI	CTCAG	5 cut(s)	191, 308, 410, 435, 1114
BspLI	GGNNCC	3 cut(s)	696, 745, 759
BspMI	ACCTGC	1 cut(s)	525
BspOI	GCTAGC	1 cut(s)	1010
BspPI	GGATC	1 cut(s)	720
BspT107I	GGYRCC	1 cut(s)	694
BsrDI	GCAATG	2 cut(s)	329, 843
BsrI	ACTGG	2 cut(s)	22, 747
BssECI	CCNNGG	2 cut(s)	338, 1075
BssMI	GATC	6 cut(s)	505, 567, 681, 712, 892, 1111
BssT1I	CCWWGG	2 cut(s)	338, 1075
Bst2UI	CCWGG	1 cut(s)	489
Bst4CI	ACNGT	4 cut(s)	160, 250, 314, 579
BstAPI	GCANNNNNTGC	1 cut(s)	845
BstC8I	GCNNGC	3 cut(s)	540, 1008, 1082
BstDEI	CTNAG	8 cut(s)	81, 88, 178, 232, 295, 397, 443, 1101
BstDSI	CCRYGG	1 cut(s)	338
BstF5I	GGATG	3 cut(s)	144, 1012, 1052
BstH2I	RGCGCY	1 cut(s)	88
BstHHI	GCGC	3 cut(s)	87, 475, 544
BstKTI	GATC	6 cut(s)	508, 570, 684, 715, 895, 1114
BstMBI	GATC	6 cut(s)	505, 567, 681, 712, 892, 1111
BstMWI	GCNNNNNNNGC	4 cut(s)	297, 550, 845, 1016
BstNI	CCWGG	1 cut(s)	489
BstNSI	RCATGY	1 cut(s)	26
BstSCI	CCNGG	1 cut(s)	487
BstSFI	CTRYAG	1 cut(s)	765
BstSLI	GKGCMC	1 cut(s)	346
BstV1I	GCAGC	1 cut(s)	860
BstXI	CCANNNNNNTGG	2 cut(s)	17, 1135
Bsu36I	CCTNAGG	1 cut(s)	295
BsuRI	GGCC	4 cut(s)	54, 438, 492, 670
BtgI	CCRYGG	1 cut(s)	338
BtsCI	GGATG	3 cut(s)	144, 1012, 1052
BtsI	GCAGTG	1 cut(s)	1039
BtsIMutI	CAGTG	4 cut(s)	156, 411, 1039, 1109
BveI	ACCTGC	1 cut(s)	525
Cac8I	GCNNGC	3 cut(s)	540, 1008, 1082
CfoI	GCGC	3 cut(s)	87, 475, 544
Cfr13I	GGNCC	2 cut(s)	669, 686
CseI	GACGC	1 cut(s)	466
CviAII	CATG	6 cut(s)	23, 339, 434, 835, 873, 984
DdeI	CTNAG	8 cut(s)	81, 88, 178, 232, 295, 397, 443, 1101
DpnI	GATC	6 cut(s)	507, 569, 683, 714, 894, 1113
DpnII	GATC	6 cut(s)	505, 567, 681, 712, 892, 1111
DriI	GACNNNNNGTC	1 cut(s)	107
EaeI	YGGCCR	1 cut(s)	436
Eam1105I	GACNNNNNGTC	1 cut(s)	107
Eco130I	CCWWGG	2 cut(s)	338, 1075
Eco47I	GGWCC	1 cut(s)	686
Eco47III	AGCGCT	1 cut(s)	86
Eco57I	CTGAAG	1 cut(s)	387
Eco81I	CCTNAGG	1 cut(s)	295
EcoRI	GAATTC	1 cut(s)	1051
EcoRII	CCWGG	1 cut(s)	487
EcoT14I	CCWWGG	2 cut(s)	338, 1075
ErhI	CCWWGG	2 cut(s)	338, 1075
FaeI	CATG	6 cut(s)	26, 342, 437, 838, 876, 987
FaqI	GGGAC	2 cut(s)	675, 743
FatI	CATG	6 cut(s)	22, 338, 433, 834, 872, 983
FbaI	TGATCA	2 cut(s)	892, 1111
Fnu4HI	GCNGC	1 cut(s)	849
FokI	GGATG	3 cut(s)	131, 999, 1059
Fsp4HI	GCNGC	1 cut(s)	849
FspBI	CTAG	5 cut(s)	116, 216, 998, 1007, 1076
GlaI	GCGC	3 cut(s)	86, 474, 543
GluI	GCNGC	1 cut(s)	849
HaeII	RGCGCY	1 cut(s)	88
HaeIII	GGCC	4 cut(s)	54, 438, 492, 670
HgaI	GACGC	1 cut(s)	466
HhaI	GCGC	3 cut(s)	87, 475, 544
Hin1II	CATG	6 cut(s)	26, 342, 437, 838, 876, 987
Hin6I	GCGC	3 cut(s)	85, 473, 542
HinP1I	GCGC	3 cut(s)	85, 473, 542
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HinfI	GANTC	4 cut(s)	102, 236, 326, 920
HphI	GGTGA	3 cut(s)	294, 658, 991
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188I	TCNGA	4 cut(s)	181, 271, 444, 925
Hpy188III	TCNNGA	4 cut(s)	258, 388, 512, 949
Hpy8I	GTNNAC	1 cut(s)	310
HpyAV	CCTTC	2 cut(s)	80, 503
HpyCH4III	ACNGT	4 cut(s)	160, 250, 314, 579
HpyCH4IV	ACGT	1 cut(s)	1058
HpyCH4V	TGCA	6 cut(s)	615, 777, 848, 872, 956, 990
HpyF10VI	GCNNNNNNNGC	4 cut(s)	297, 550, 845, 1016
HpyF3I	CTNAG	8 cut(s)	81, 88, 178, 232, 295, 397, 443, 1101
HpySE526I	ACGT	1 cut(s)	1058
Hsp92II	CATG	6 cut(s)	26, 342, 437, 838, 876, 987
HspAI	GCGC	3 cut(s)	85, 473, 542
Ksp22I	TGATCA	2 cut(s)	892, 1111
Kzo9I	GATC	6 cut(s)	505, 567, 681, 712, 892, 1111
LmnI	GCTCC	5 cut(s)	296, 377, 416, 743, 757
Lsp1109I	GCAGC	1 cut(s)	860
LweI	GCATC	3 cut(s)	378, 474, 786
MaeI	CTAG	5 cut(s)	116, 216, 998, 1007, 1076
MaeII	ACGT	1 cut(s)	1058
MaeIII	GTNAC	3 cut(s)	109, 454, 979
MalI	GATC	6 cut(s)	507, 569, 683, 714, 894, 1113
MboI	GATC	6 cut(s)	505, 567, 681, 712, 892, 1111
MboII	GAAGA	5 cut(s)	16, 500, 605, 638, 875
MhlI	GDGCHC	3 cut(s)	36, 346, 413
MluCI	AATT	8 cut(s)	74, 165, 284, 629, 720, 867, 932, 1051
MlyI	GAGTC	3 cut(s)	96, 230, 320
MmeI	TCCRAC	3 cut(s)	142, 1041, 1134
MslI	CAYNNNNRTG	1 cut(s)	677
MspA1I	CMGCKG	1 cut(s)	1019
MspR9I	CCNGG	1 cut(s)	489
Mva1269I	GAATGC	2 cut(s)	958, 1129
MvaI	CCWGG	1 cut(s)	489
MwoI	GCNNNNNNNGC	4 cut(s)	297, 550, 845, 1016
NcoI	CCATGG	1 cut(s)	338
NdeII	GATC	6 cut(s)	505, 567, 681, 712, 892, 1111
NheI	GCTAGC	1 cut(s)	1006
NlaIII	CATG	6 cut(s)	26, 342, 437, 838, 876, 987
NlaIV	GGNNCC	3 cut(s)	696, 745, 759
NmuCI	GTSAC	3 cut(s)	109, 454, 979
NspI	RCATGY	1 cut(s)	26
PctI	GAATGC	2 cut(s)	958, 1129
PfeI	GAWTC	1 cut(s)	920
PflMI	CCANNNNNTGG	1 cut(s)	753
PkrI	GCNGC	1 cut(s)	850
PleI	GAGTC	3 cut(s)	96, 230, 320
PpsI	GAGTC	3 cut(s)	96, 230, 320
PsiI	TTATAA	1 cut(s)	1034
Psp6I	CCWGG	1 cut(s)	487
PspGI	CCWGG	1 cut(s)	487
PspN4I	GGNNCC	3 cut(s)	696, 745, 759
PspPI	GGNCC	2 cut(s)	669, 686
PvuII	CAGCTG	1 cut(s)	1019
RseI	CAYNNNNRTG	1 cut(s)	677
SatI	GCNGC	1 cut(s)	849
Sau3AI	GATC	6 cut(s)	505, 567, 681, 712, 892, 1111
Sau96I	GGNCC	2 cut(s)	669, 686
SchI	GAGTC	3 cut(s)	96, 230, 320
ScrFI	CCNGG	1 cut(s)	489
SduI	GDGCHC	3 cut(s)	36, 346, 413
SfaNI	GCATC	3 cut(s)	378, 474, 786
SfcI	CTRYAG	1 cut(s)	765
SinI	GGWCC	1 cut(s)	686
SmiMI	CAYNNNNRTG	1 cut(s)	677
SmlI	CTYRAG	3 cut(s)	48, 104, 256
SmoI	CTYRAG	3 cut(s)	48, 104, 256
Sse9I	AATT	8 cut(s)	74, 165, 284, 629, 720, 867, 932, 1051
SsiI	CCGC	2 cut(s)	468, 1044
SspMI	CTAG	5 cut(s)	116, 216, 998, 1007, 1076
StyD4I	CCNGG	1 cut(s)	487
StyI	CCWWGG	2 cut(s)	338, 1075
TaaI	ACNGT	4 cut(s)	160, 250, 314, 579
TaiI	ACGT	1 cut(s)	1061
TaqII	GACCGA	1 cut(s)	674
TasI	AATT	8 cut(s)	74, 165, 284, 629, 720, 867, 932, 1051
TfiI	GAWTC	1 cut(s)	920
TscAI	CASTG	4 cut(s)	163, 411, 1046, 1109
TseFI	GTSAC	3 cut(s)	109, 454, 979
TseI	GCWGC	1 cut(s)	848
Tsp45I	GTSAC	3 cut(s)	109, 454, 979
TspDTI	ATGAA	3 cut(s)	17, 207, 666
TspRI	CASTG	4 cut(s)	163, 411, 1046, 1109
Van91I	CCANNNNNTGG	1 cut(s)	753
VpaK11BI	GGWCC	1 cut(s)	686
XapI	RAATTY	2 cut(s)	284, 1051
XceI	RCATGY	1 cut(s)	26
XmaJI	CCTAGG	1 cut(s)	1075
XspI	CTAG	5 cut(s)	116, 216, 998, 1007, 1076

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.