Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0003868

Physical Location & Seq

Genomic Coordinates Reverse (-)

1761252 .. 1763041

Gene Structure 1790 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G002090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGAAGAACCAAAAAACTGGGCATGTGATTGTGCTCACATATCCAGCTCAAGGCCACATAAACCCTCTGCTTCAATTTGCCAAGCGCTTAGCCTCCAAAGGACTCAAGGTCACTCTAGCCACCACCCCTTATACTCTCAAATCCATCCACTCAACCACTGTAGGAATTGAACCAATCTCAGATGGATATGATGAAAGTGGATTTAGCCAATCCCCTAGTGTTCAAGCCTACTTAGACTCATTCAGAACAGTTGGCTCAAGAACACTATCAGAGCTTATACTCAAATTCAGCTCCTCAGGCTCACCTGTCAACTGTATTGTATATGATTCATTGCTTCCATGGGCACTTGATGTGGCTAAAAAGTTCAGCATCTATGGAGCTGTGTTCTTGACAAACTCAGCTTCAGTGTGCTCTATATTTTGGCATATCAGTCATGGCCGTCTGAGTTTCCCTGTGACGCAAGAAAGCGCCTGCGCCTCACACGCCTTATTTGGCTTTGATCTTCGAAAGTTTGACAGCCTTGAAGAAAATGATTGGGTTTTCTGCAACTCCTTTGAAGAATTGGAAAGTGAGCTGGTGAATGAAATGTTGGGACTTTGGCCCCTTGTGATGATTGGTCCAATGGTGCCATCAGCCTACTTGGATCAACAAATTGATGGGGACAAAGCTTATGGAGCCAGTCTTTGGGAGCCAGCTACAGACAAGTGCATCAAATGGCTGGATAAAAAACCACCTCAAAGTGTGATATACATATCTTTTGGAAGCATGGCAAACATTGCAGCAAAACAGGTTGAAGAAATCGCATGGGGCTTGAAAGCAAGTGATCAGCACTTCCTCTGGGTTGTGAAAGAGTCCGAGAACAAATTGCCTGATGAGTTCCTGAACGCAATAGGCGAAACAGGGTTGGTGGTAACATGGTGCAACCAACTAGAGGTACTAGCACATCCAGCTGTGGGATGTTTTGTAACTCACTGCGGATGGAATTCCACGTTGGAGGGATTGGGCCTAGGCGTGCCGATGGTGGGAGTGCCTCAGTGGAGTGATCAGCCAACGAATGCCAAGTTTGTGGAGGAGTTGTGGGGGGTTGGAGTGAGAGTTAAGAAGAATGAAGAGGGGCTTGTGACGAAGGACGAGTTAGAGATGTGTATAAGGGAAGTCATGGTGGGAGAAAGAAGTGATCAGATTAAAAGGAATGTCATGAAATGGAGTGAGGCTGCAAAGAGAGCTGTTAGTGTAAGGGGTAAATCAGATGAGAACATCAATGACTTCATAAGCAAGCTTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016043 GO:0016143 GO:0016144 GO:0016740 GO:0016757 GO:0016758 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0033036 GO:0033037 GO:0033554 GO:0035251 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044424 GO:0044464 GO:0044550 GO:0045229 GO:0046527 GO:0047251 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0080043 GO:0080044 GO:0098542 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210

Pfam Domains

Protein Families

UDPGT

Protein Analysis

428

Amino Acids

47.47

Weight (kDa)

5.4

Isoelectric Point (pI)

40.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_N	PF26168	9 - 55	1.4e-06	Glycosyltransferase, N-terminal domain
UDPGT	PF00201	246 - 404	1.7e-30	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003868)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24100
fragaria_vesca	FvH4_4g35050 FvH4_4g35051 FvH4_5g16480
malus_domestica	MD16G1086300.v1.1
prunus_persica	Prupe.1G260100_v2.0.a1 Prupe.1G260100_v2.0.a1 Prupe.5G178200_v2.0.a1
pyrus_communis	pycom16g07430
rosa_chinensis	RchiOBHm_Chr4g0444591 RchiOBHm_Chr4g0444641 RchiOBHm_Chr7g0179611
rosa_laevigata	RLG00000005337 RLG00000005817 RLG00000005819
rosa_multiflora	Rmu_sc0005329.1_g000025 Rmu_sc0015511.1_g000002 Rmu_sc0015511.1_g000004
rosa_roxburghii	Rroxscaffold_155G00443870 Rroxscaffold_3G00273600 Rroxscaffold_5G00385040 Rroxscaffold_5G00385100
rosa_rugosa	Rorug04G0354200 Rorug04G0354300 Rorug06G0426600
rosa_samantha	Rh4AG414100 Rh4CG440500 Rh4CG440800 Rh4DG421500 Rh7AG026000 Rh7CG027300
rosa_wichuraiana	Rw4G035580 Rw4G035590 Rw7G002090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	625
AccB7I	CCANNNNNTGG	1 cut(s)	684
AciI	CCGC	1 cut(s)	975
AclWI	GGATC	1 cut(s)	651
AcoI	YGGCCR	1 cut(s)	436
AcsI	RAATTY	2 cut(s)	284, 982
AcuI	CTGAAG	1 cut(s)	387
AfaI	GTAC	1 cut(s)	936
AfeI	AGCGCT	1 cut(s)	86
AfiI	CCNNNNNNNGG	5 cut(s)	50, 684, 931, 953, 1022
AgsI	TTSAA	7 cut(s)	74, 170, 224, 524, 557, 794, 814
AhdI	GACNNNNNGTC	1 cut(s)	107
AjuI	GAANNNNNNNTTGG	4 cut(s)	572, 604, 974, 1006
Alw21I	GWGCWC	2 cut(s)	36, 413
AlwI	GGATC	1 cut(s)	651
Aor51HI	AGCGCT	1 cut(s)	86
AoxI	GGCC	4 cut(s)	52, 436, 599, 1003
ApeKI	GCWGC	2 cut(s)	779, 1214
ApoI	RAATTY	2 cut(s)	284, 982
AspA2I	CCTAGG	1 cut(s)	1006
AspLEI	GCGC	3 cut(s)	87, 470, 476
AspS9I	GGNCC	3 cut(s)	600, 617, 1003
AsuHPI	GGTGA	2 cut(s)	294, 589
AsuII	TTCGAA	1 cut(s)	505
AvaII	GGWCC	1 cut(s)	617
AvrII	CCTAGG	1 cut(s)	1006
AxyI	CCTNAGG	1 cut(s)	295
BaeGI	GKGCMC	1 cut(s)	346
BanI	GGYRCC	1 cut(s)	625
Bbv12I	GWGCWC	2 cut(s)	36, 413
BbvI	GCAGC	2 cut(s)	791, 1201
BccI	CCATC	6 cut(s)	152, 176, 637, 650, 972, 1012
BceAI	ACGGC	1 cut(s)	423
BclI	TGATCA	3 cut(s)	823, 1042, 1177
BfaI	CTAG	5 cut(s)	116, 216, 929, 938, 1007
BfmI	CTRYAG	2 cut(s)	159, 696
BfoI	RGCGCY	2 cut(s)	88, 471
BisI	GCNGC	2 cut(s)	780, 1215
BlnI	CCTAGG	1 cut(s)	1006
BlpI	GCTNAGC	1 cut(s)	88
BlsI	GCNGC	2 cut(s)	781, 1216
Bme18I	GGWCC	1 cut(s)	617
BmeRI	GACNNNNNGTC	1 cut(s)	107
BmgT120I	GGNCC	3 cut(s)	600, 617, 1003
BmiI	GGNNCC	4 cut(s)	602, 627, 676, 690
BmrI	ACTGGG	1 cut(s)	27
BmsI	GCATC	2 cut(s)	378, 717
BmuI	ACTGGG	1 cut(s)	27
Bpu1102I	GCTNAGC	1 cut(s)	88
Bpu14I	TTCGAA	1 cut(s)	505
BpuEI	CTTGAG	3 cut(s)	33, 89, 241
BsaJI	CCNNGG	2 cut(s)	338, 1006
BsaXI	ACNNNNNCTCC	4 cut(s)	1061, 1080, 1091, 1110
Bsc4I	CCNNNNNNNGG	5 cut(s)	50, 684, 931, 953, 1022
Bse1I	ACTGG	2 cut(s)	22, 678
Bse21I	CCTNAGG	1 cut(s)	295
Bse3DI	GCAATG	2 cut(s)	329, 774
BseDI	CCNNGG	2 cut(s)	338, 1006
BseGI	GGATG	4 cut(s)	144, 943, 962, 983
BseLI	CCNNNNNNNGG	5 cut(s)	50, 684, 931, 953, 1022
BseMI	GCAATG	2 cut(s)	329, 774
BseMII	CTCAG	5 cut(s)	192, 309, 411, 434, 1046
BseNI	ACTGG	2 cut(s)	22, 678
BseRI	GAGGAG	2 cut(s)	283, 1085
BseSI	GKGCMC	1 cut(s)	346
BseXI	GCAGC	2 cut(s)	791, 1201
BshFI	GGCC	4 cut(s)	54, 438, 601, 1005
BshNI	GGYRCC	1 cut(s)	625
BsiHKAI	GWGCWC	2 cut(s)	36, 413
BslFI	GGGAC	2 cut(s)	606, 674
BslI	CCNNNNNNNGG	5 cut(s)	50, 684, 931, 953, 1022
BsmFI	GGGAC	2 cut(s)	606, 674
BsmI	GAATGC	1 cut(s)	1060
BsnI	GGCC	4 cut(s)	54, 438, 601, 1005
Bsp119I	TTCGAA	1 cut(s)	505
Bsp1286I	GDGCHC	3 cut(s)	36, 346, 413
Bsp143I	GATC	5 cut(s)	499, 643, 823, 1042, 1177
Bsp1720I	GCTNAGC	1 cut(s)	88
Bsp19I	CCATGG	1 cut(s)	338
BspACI	CCGC	1 cut(s)	975
BspANI	GGCC	4 cut(s)	54, 438, 601, 1005
BspCNI	CTCAG	5 cut(s)	191, 308, 410, 435, 1045
BspHI	TCATGA	1 cut(s)	1197
BspLI	GGNNCC	4 cut(s)	602, 627, 676, 690
BspPI	GGATC	1 cut(s)	651
BspT104I	TTCGAA	1 cut(s)	505
BspT107I	GGYRCC	1 cut(s)	625
BsrDI	GCAATG	2 cut(s)	329, 774
BsrI	ACTGG	2 cut(s)	22, 678
BssECI	CCNNGG	2 cut(s)	338, 1006
BssMI	GATC	5 cut(s)	499, 643, 823, 1042, 1177
BssT1I	CCWWGG	2 cut(s)	338, 1006
Bst4CI	ACNGT	3 cut(s)	160, 250, 314
Bst6I	CTCTTC	1 cut(s)	1104
BstAPI	GCANNNNNTGC	1 cut(s)	776
BstBI	TTCGAA	1 cut(s)	505
BstC8I	GCNNGC	4 cut(s)	472, 693, 1013, 1277
BstDEI	CTNAG	7 cut(s)	88, 178, 232, 295, 397, 443, 1032
BstDSI	CCRYGG	1 cut(s)	338
BstF5I	GGATG	4 cut(s)	144, 943, 962, 983
BstH2I	RGCGCY	2 cut(s)	88, 471
BstHHI	GCGC	3 cut(s)	87, 470, 476
BstKTI	GATC	5 cut(s)	502, 646, 826, 1045, 1180
BstMBI	GATC	5 cut(s)	499, 643, 823, 1042, 1177
BstMWI	GCNNNNNNNGC	6 cut(s)	297, 482, 674, 776, 947, 1223
BstNSI	RCATGY	1 cut(s)	26
BstSFI	CTRYAG	2 cut(s)	159, 696
BstSLI	GKGCMC	1 cut(s)	346
BstV1I	GCAGC	2 cut(s)	791, 1201
BstXI	CCANNNNNNTGG	2 cut(s)	17, 1066
Bsu36I	CCTNAGG	1 cut(s)	295
BsuRI	GGCC	4 cut(s)	54, 438, 601, 1005
BtgI	CCRYGG	1 cut(s)	338
BtsCI	GGATG	4 cut(s)	144, 943, 962, 983
BtsI	GCAGTG	1 cut(s)	970
BtsIMutI	CAGTG	4 cut(s)	156, 411, 970, 1040
Cac8I	GCNNGC	4 cut(s)	472, 693, 1013, 1277
CciI	TCATGA	1 cut(s)	1197
CfoI	GCGC	3 cut(s)	87, 470, 476
Cfr13I	GGNCC	3 cut(s)	600, 617, 1003
CseI	GACGC	1 cut(s)	466
Csp6I	GTAC	1 cut(s)	935
CviAII	CATG	8 cut(s)	23, 339, 434, 766, 804, 915, 1159, 1198
CviQI	GTAC	1 cut(s)	935
DdeI	CTNAG	7 cut(s)	88, 178, 232, 295, 397, 443, 1032
DpnI	GATC	5 cut(s)	501, 645, 825, 1044, 1179
DpnII	GATC	5 cut(s)	499, 643, 823, 1042, 1177
DriI	GACNNNNNGTC	1 cut(s)	107
EaeI	YGGCCR	1 cut(s)	436
Eam1104I	CTCTTC	1 cut(s)	1104
Eam1105I	GACNNNNNGTC	1 cut(s)	107
EarI	CTCTTC	1 cut(s)	1104
Eco130I	CCWWGG	2 cut(s)	338, 1006
Eco47I	GGWCC	1 cut(s)	617
Eco47III	AGCGCT	1 cut(s)	86
Eco57I	CTGAAG	1 cut(s)	387
Eco81I	CCTNAGG	1 cut(s)	295
EcoRI	GAATTC	1 cut(s)	982
EcoT14I	CCWWGG	2 cut(s)	338, 1006
ErhI	CCWWGG	2 cut(s)	338, 1006
FaeI	CATG	8 cut(s)	26, 342, 437, 769, 807, 918, 1162, 1201
FalI	AAGNNNNNCTT	2 cut(s)	1101, 1133
FaqI	GGGAC	2 cut(s)	606, 674
FatI	CATG	8 cut(s)	22, 338, 433, 765, 803, 914, 1158, 1197
FbaI	TGATCA	3 cut(s)	823, 1042, 1177
Fnu4HI	GCNGC	2 cut(s)	780, 1215
FokI	GGATG	4 cut(s)	131, 930, 969, 990
Fsp4HI	GCNGC	2 cut(s)	780, 1215
FspBI	CTAG	5 cut(s)	116, 216, 929, 938, 1007
GlaI	GCGC	3 cut(s)	86, 469, 475
GluI	GCNGC	2 cut(s)	780, 1215
HaeII	RGCGCY	2 cut(s)	88, 471
HaeIII	GGCC	4 cut(s)	54, 438, 601, 1005
HgaI	GACGC	1 cut(s)	466
HhaI	GCGC	3 cut(s)	87, 470, 476
Hin1II	CATG	8 cut(s)	26, 342, 437, 769, 807, 918, 1162, 1201
Hin6I	GCGC	3 cut(s)	85, 468, 474
HinP1I	GCGC	3 cut(s)	85, 468, 474
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HindIII	AAGCTT	2 cut(s)	666, 1277
HinfI	GANTC	4 cut(s)	102, 236, 326, 851
HphI	GGTGA	2 cut(s)	294, 589
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188I	TCNGA	7 cut(s)	181, 245, 271, 444, 856, 1182, 1249
Hpy188III	TCNNGA	4 cut(s)	258, 388, 880, 1198
Hpy8I	GTNNAC	1 cut(s)	310
HpyAV	CCTTC	1 cut(s)	1120
HpyCH4III	ACNGT	3 cut(s)	160, 250, 314
HpyCH4IV	ACGT	1 cut(s)	989
HpyCH4V	TGCA	5 cut(s)	546, 708, 779, 921, 1217
HpyF10VI	GCNNNNNNNGC	6 cut(s)	297, 482, 674, 776, 947, 1223
HpyF3I	CTNAG	7 cut(s)	88, 178, 232, 295, 397, 443, 1032
HpySE526I	ACGT	1 cut(s)	989
Hsp92II	CATG	8 cut(s)	26, 342, 437, 769, 807, 918, 1162, 1201
HspAI	GCGC	3 cut(s)	85, 468, 474
Ksp22I	TGATCA	3 cut(s)	823, 1042, 1177
Kzo9I	GATC	5 cut(s)	499, 643, 823, 1042, 1177
LmnI	GCTCC	4 cut(s)	296, 377, 674, 688
Lsp1109I	GCAGC	2 cut(s)	791, 1201
LweI	GCATC	2 cut(s)	378, 717
MaeI	CTAG	5 cut(s)	116, 216, 929, 938, 1007
MaeII	ACGT	1 cut(s)	989
MaeIII	GTNAC	5 cut(s)	109, 454, 910, 964, 1120
MalI	GATC	5 cut(s)	501, 645, 825, 1044, 1179
MboI	GATC	5 cut(s)	499, 643, 823, 1042, 1177
MboII	GAAGA	7 cut(s)	16, 494, 536, 569, 806, 1114, 1121
MhlI	GDGCHC	3 cut(s)	36, 346, 413
MluCI	AATT	7 cut(s)	74, 165, 284, 560, 651, 863, 982
MlyI	GAGTC	3 cut(s)	96, 230, 860
MmeI	TCCRAC	2 cut(s)	972, 1066
MseI	TTAA	2 cut(s)	1098, 1185
MspA1I	CMGCKG	1 cut(s)	950
Mva1269I	GAATGC	1 cut(s)	1060
MwoI	GCNNNNNNNGC	6 cut(s)	297, 482, 674, 776, 947, 1223
NcoI	CCATGG	1 cut(s)	338
NdeII	GATC	5 cut(s)	499, 643, 823, 1042, 1177
NlaIII	CATG	8 cut(s)	26, 342, 437, 769, 807, 918, 1162, 1201
NlaIV	GGNNCC	4 cut(s)	602, 627, 676, 690
NmuCI	GTSAC	3 cut(s)	109, 454, 1120
NspI	RCATGY	1 cut(s)	26
NspV	TTCGAA	1 cut(s)	505
PagI	TCATGA	1 cut(s)	1197
PcsI	WCGNNNNNNNCGW	1 cut(s)	891
PctI	GAATGC	1 cut(s)	1060
PfeI	GAWTC	1 cut(s)	326
PflMI	CCANNNNNTGG	1 cut(s)	684
PkrI	GCNGC	2 cut(s)	781, 1216
PleI	GAGTC	3 cut(s)	96, 230, 859
PpsI	GAGTC	3 cut(s)	96, 230, 859
PspN4I	GGNNCC	4 cut(s)	602, 627, 676, 690
PspPI	GGNCC	3 cut(s)	600, 617, 1003
PvuII	CAGCTG	1 cut(s)	950
RsaI	GTAC	1 cut(s)	936
RsaNI	GTAC	1 cut(s)	935
SaqAI	TTAA	2 cut(s)	1098, 1185
SatI	GCNGC	2 cut(s)	780, 1215
Sau3AI	GATC	5 cut(s)	499, 643, 823, 1042, 1177
Sau96I	GGNCC	3 cut(s)	600, 617, 1003
SchI	GAGTC	3 cut(s)	96, 230, 860
SduI	GDGCHC	3 cut(s)	36, 346, 413
SfaNI	GCATC	2 cut(s)	378, 717
SfcI	CTRYAG	2 cut(s)	159, 696
SfuI	TTCGAA	1 cut(s)	505
SinI	GGWCC	1 cut(s)	617
SmlI	CTYRAG	3 cut(s)	48, 104, 256
SmoI	CTYRAG	3 cut(s)	48, 104, 256
Sse9I	AATT	7 cut(s)	74, 165, 284, 560, 651, 863, 982
SsiI	CCGC	1 cut(s)	975
SspMI	CTAG	5 cut(s)	116, 216, 929, 938, 1007
StyI	CCWWGG	2 cut(s)	338, 1006
TaaI	ACNGT	3 cut(s)	160, 250, 314
TaiI	ACGT	1 cut(s)	992
TaqI	TCGA	1 cut(s)	505
TasI	AATT	7 cut(s)	74, 165, 284, 560, 651, 863, 982
TfiI	GAWTC	1 cut(s)	326
Tru1I	TTAA	2 cut(s)	1098, 1185
Tru9I	TTAA	2 cut(s)	1098, 1185
TscAI	CASTG	4 cut(s)	163, 411, 977, 1040
TseFI	GTSAC	3 cut(s)	109, 454, 1120
TseI	GCWGC	2 cut(s)	779, 1214
Tsp45I	GTSAC	3 cut(s)	109, 454, 1120
TspDTI	ATGAA	7 cut(s)	17, 207, 318, 597, 1122, 1214, 1258
TspRI	CASTG	4 cut(s)	163, 411, 977, 1040
Van91I	CCANNNNNTGG	1 cut(s)	684
VpaK11BI	GGWCC	1 cut(s)	617
XapI	RAATTY	2 cut(s)	284, 982
XceI	RCATGY	1 cut(s)	26
XmaJI	CCTAGG	1 cut(s)	1006
XspI	CTAG	5 cut(s)	116, 216, 929, 938, 1007

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.