FvH4_5g17200

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0010425
Physical Location & Seq
Reverse (-)
9810196 .. 9818324
8129 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g17200.t2

Sequence Viewer

Length: 3105 bp
ATGAAGAACCTTCTTAAGAAGCTCCATATCATGTCCAACCAATCAGAAGATTCAGCAGAAGGGTCTAATTCATCAAAGAGCATCAATAAGGCTATTGATAAGTTGTCTTCTGACACTGAGAGGCTTTTGAACTCAAGGTCCCAGCAGAGTTCTGAGCATAAACACTTGTCTGGGATATCAGGTTGGCTCAGTTCAGTGGCTAATAGAAAGAGCCCTAGTCCCCCATCATCTTCAAATGTTACTAGGGGGGAGAGAATTGAACAACCTGATGCAGTTAGTAGGAATGGAGGGGATGTTGTTTCCGATACAGCTAGGCGTGATTCAGGGTCTAGTACTTCAAGGGATGCTGATATAATGGAAGAGTATCAGATTCAATTGGCTTTGGAATTGAGTGCTAGGGAGGATCCAGAGGCAGTTCAGATTGAAGCTGTTAAGCAGATTAGCTTAGGCTCTTGTGCTCCGGATAATACCCCAGCTGAAGTTATTGCCTATCGTTATTGGAATTACAATGCTCTTAGTTATGATGATAAGATCATGGATGGTTTTTATGACCTGTATGGAATATTGACGGAGTCGACCTCAGACAGAATGCCTTCCCTTGTCGATCTGCAAGGAACAGCTCTGTCAGACAGTGTCAACTGGGAAGCAGTTTTGGTCAATAGAGCTGCAGATGCGAATTTATTAAAACTTGAACATATGGCGCTAGAAATGGCAGTAAAGTCACGTTCAGATCCTCTGGTTTCTGTAAACAGAAATTTGGTGCGAAAACTTGCCCTCTTAGTCGCCAACTCTATGGGTGGACCAGTTGCGAATCCTTACAACATGTTGAGGGCCTGGCAAAGTCTTAGTCAGAGTCTGAAAACAACCCTTGGTAGCATGGTTTTGCCACTTGGTTCTCTGACAATAGGATTAGCTCGGCATCGTGCATTGTTGTTCAAGGCTTTGGCTGATAGTGTTGGCATCCCATGCCGGTTGGTGAAAGGACAACAATACACGGGTTCCAACGATGTAGCAATGAACTTTGTAAAGATTGATGATGGAAGGGAGTATATTGTTGATCTGATGGCTGACCCTGGCACACTTATTCCATCTGATGAAGCTGGATCACATATAGAATATGATGAACCTTACTTTCCTGCCAGTCCTTTGTCTAGAGACATTGATTCTTCTTCTCATGTAGCCTCCTCCAGTAGTGGAGTTGGAAGTTCATTTGAAGAACATTCAGACTTTGGGACATTAGACCGAAAATCCAGGTTAAGTAATTATGCTTCTGCAGAAAGGGAATCTGAAGAGAGCGAAGCCCCAAATTCTCATGAAAATTTACCCAGACCAACTGAATCTGAGGAATCCAAGATACCTTCAGATGATTTGAGATACTTCTCTAATGTGGAGAAGGCGCTGGTGCAAGAACTTCCAGGAAGGCCAAATTATACACATGCAAGATCTCCGTCATGGACCGAAGGTGTTAGCTCCCCTGCGGTTCGGAGAATGAAAGTTAAGGATGTTTCACAATACATGATTGTTGCTGCCAAAGAGAATCCAAATTTAGCTCAAAAACTTCATGATGTGTTACTCGAAAGTGGTGTTGTTGCTCCTAGAAACTTGTTTACAGAAATATATTCAGAACACTTAGATGTATCGACAGTTGAGACCAAGCCCCGGACAGAAGATACGGGAGCACATAAGGAGAGGTTTGAAATGAGAAAGAGTAAAGGTCAAGATGATACCAGTGCGGCTCACTTTTTGCCTCCACTACCTCAGCACAGGGTGCATTCTAAAGCTAGTTCCTCAGGTCAACCAGAGCATCTTAAGCCTGTGGAAGGTTTAGGGATCAGCCTACCACTTGATACCAGGGAAGTAACTGGCCAGAATATCTCATCACAGTCTGAAGTAACTCCAGTTAAATATACAAAAAGTGTCCCGGTTGCTGCAGCAGCGGCGGCCGCAGCAGCTGTTGTTGCATCTTCCATGGTAGTTGCAGTAGCAAAGTCAAGTGCTGACTCAAATATTGAACTTCCTGTAGCAGCTGCTGTGACTGCTAGTGCTGCAGCAGTGGTTGCAACAACTGCAGCTGTCAGCAAGCAGTATGAGCAGGGAACAAAAAGTGATGGGGATGCAGAAGGTTCTGGTAACGTACCACGTGGCAGTGGGGACCGTGATCATGATGCTTCAGGAGTTATCTCAGAAGGCGAGAGAGTCTCAGATCAATCGACAGGTAACGAAAGTACAAAATCTGACATTGGTGATGATGTAGCAGATTGCGAGATTCCATGGGAGGAAATCACCTTGGGCGAACGAATTGGACTTGGATCATATGGGGAGGTCTATCATGGAGACTGGCATGGGACGGAGGTTGCTGTGAAGAGGTTTCTAGATCAAGAGCTTTTGGGTGAATCACTTGATGAATTCAGAAGTGAGGTTCGAATAATGAAGAGACTCAGACATCCCAATGTTGTTCTCTTCATGGGAGCCATAACTCGTGCTCCAAATCTTTCCATTGTTACAGAATTTCTTCCAAGAGGTAGTTTATATAGGCTATTACACCGGCCTAACAATCAATTAGATGAGCGAAGACGCTTGAGGATGGCTCTTGATGCTGCTCGGGGAATGAATTACTTGCATAACTGCACTCCTGTAATAGTACACCGTGATTTGAAGTCTCCAAACCTTCTCGTGGATAAGAATTGGGTCGTTAAGGTCTGTGATTTTGGATTATCAAGAATGAAGAACAGCACATTTCTCTCCTCGAGGTCCACTGCAGGGACGGCGGAATGGATGGCTCCAGAAGTGCTAAGAAATGAACCTTCAGATGAAAAGTGTGATGTTTATAGCTATGGGGTCATATTGTGGGAGCTCTCTACAATGCAACAGCCGTGGGGAGGAATGAACCCAATGCAAGTTGTTGGTGCAGTTGGATTTCAACATCGTCGTCTTGATATTCCAAATGATATTGATCCTGCAATTGGAGATCTTATTAAGAGATGCTGGCAGACAGATCCAAAATTGAGACCCTCATTTGCTGAGATCATGGCTATCCTGAAGCCATTACAGAAGCCTGTAAGTAGCTCTGCAGTGCCTAGATCTACTGCACAAAGGCCATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009651 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0035556 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EDR1 Pkinase_Tyr

Protein Analysis

1035

Amino Acids

112.94

Weight (kDa)

5.53

Isoelectric Point (pI)

48.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDR1_CTR1_ARMC3_pept PF14381 1 - 184 4.1e-64 EDR1/CTR1/ARMC3, peptidase-like
PK_Tyr_Ser-Thr PF07714 583 - 834 3e-66 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 585 - 832 4.7e-52 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 2746
AccI GTMKAC 1 cut(s) 575
AccIII TCCGGA 1 cut(s) 460
AciI CCGC 6 cut(s) 1478, 1733, 1937, 1940, 1944, 2768
AclWI GGATC 8 cut(s) 398, 411, 725, 1111, 1838, 2317, 2948, 2990
AcoI YGGCCR 2 cut(s) 1864, 1941
AcsI RAATTY 7 cut(s) 676, 754, 1306, 1318, 1543, 2405, 2507
AcuI CTGAAG 7 cut(s) 498, 1308, 1344, 1908, 2154, 2790, 3059
AcvI CACGTG 1 cut(s) 2141
AdeI CACNNNGTG 1 cut(s) 1768
AfaI GTAC 4 cut(s) 334, 2136, 2227, 2643
AfiI CCNNNNNNNGG 6 cut(s) 1659, 1820, 2674, 2760, 2879, 2963
AflII CTTAAG 2 cut(s) 14, 1808
AflIII ACRYGT 1 cut(s) 822
AjnI CCWGG 5 cut(s) 833, 1072, 1250, 1414, 1850
AloI GAACNNNNNNTCC 2 cut(s) 122, 154
Alw21I GWGCWC 4 cut(s) 460, 1681, 2485, 2856
Alw26I GTCTC 7 cut(s) 1149, 1643, 2203, 2328, 2428, 2664, 3001
AlwI GGATC 8 cut(s) 398, 411, 725, 1111, 1838, 2317, 2948, 2990
AlwNI CAGNNNCTG 3 cut(s) 856, 1952, 2030
Ama87I CYCGRG 2 cut(s) 2601, 2746
Aor13HI TCCGGA 1 cut(s) 460
AoxI GGCC 6 cut(s) 831, 1421, 1864, 1941, 2546, 3095
ApoI RAATTY 7 cut(s) 676, 754, 1306, 1318, 1543, 2405, 2507
ArsI GACNNNNNNTTYG 2 cut(s) 832, 864
Asp700I GAANNNNTTC 2 cut(s) 592, 2511
AspLEI GCGC 2 cut(s) 703, 1399
AspS9I GGNCC 6 cut(s) 138, 800, 831, 1455, 2152, 2751
AsuC2I CCSGG 2 cut(s) 1660, 1922
AsuHPI GGTGA 4 cut(s) 988, 2255, 2275, 2402
AsuII TTCGAA 1 cut(s) 2422
AvaI CYCGRG 2 cut(s) 2601, 2746
AvaII GGWCC 5 cut(s) 138, 800, 1455, 2152, 2751
AxyI CCTNAGG 1 cut(s) 1789
BalI TGGCCA 1 cut(s) 1866
BamHI GGATCC 1 cut(s) 403
BanII GRGCYC 2 cut(s) 215, 2856
BarI GAAGNNNNNNTAC 2 cut(s) 1252, 1284
BauI CACGAG 2 cut(s) 2478, 2672
BbrPI CACGTG 1 cut(s) 2141
BbsI GAAGAC 2 cut(s) 99, 2578
Bbv12I GWGCWC 4 cut(s) 460, 1681, 2485, 2856
BbvCI CCTCAGC 1 cut(s) 1758
BccI CCATC 8 cut(s) 232, 533, 1031, 1057, 1096, 2102, 2578, 2770
BceAI ACGGC 2 cut(s) 2781, 2857
BciT130I CCWGG 5 cut(s) 835, 1074, 1252, 1416, 1852
BclI TGATCA 1 cut(s) 2158
BcnI CCSGG 2 cut(s) 1660, 1922
BcoDI GTCTC 7 cut(s) 1149, 1643, 2203, 2328, 2428, 2664, 3001
BfmI CTRYAG 8 cut(s) 666, 1272, 1929, 2019, 2046, 2067, 2757, 3069
BfoI RGCGCY 2 cut(s) 704, 1400
BfrI CTTAAG 2 cut(s) 14, 1808
BglII AGATCT 3 cut(s) 1442, 2968, 3080
BmcAI AGTACT 1 cut(s) 334
Bme1390I CCNGG 7 cut(s) 835, 1074, 1252, 1416, 1660, 1852, 1922
Bme18I GGWCC 5 cut(s) 138, 800, 1455, 2152, 2751
BmeT110I CYCGRG 2 cut(s) 2601, 2746
BmgT120I GGNCC 6 cut(s) 138, 800, 831, 1455, 2152, 2751
BmiI GGNNCC 6 cut(s) 140, 405, 1000, 2153, 2470, 2781
BmrFI CCNGG 7 cut(s) 835, 1074, 1252, 1416, 1660, 1852, 1922
BmrI ACTGGG 1 cut(s) 649
BmuI ACTGGG 1 cut(s) 649
BpiI GAAGAC 2 cut(s) 99, 2578
BplI GAGNNNNNCTC 6 cut(s) 563, 595, 2183, 2215, 2572, 2604
BpmI CTGGAG 3 cut(s) 1171, 1881, 2766
Bpu10I CCTNAGC 2 cut(s) 445, 1758
Bpu14I TTCGAA 1 cut(s) 2422
BpuEI CTTGAG 2 cut(s) 118, 2599
BpuMI CCSGG 2 cut(s) 1660, 1922
BsaAI YACGTR 1 cut(s) 2141
BsaBI GATNNNNATC 1 cut(s) 2952
BsaI GGTCTC 2 cut(s) 1643, 3001
BsaJI CCNNGG 8 cut(s) 868, 1072, 1658, 1851, 1968, 2270, 2286, 2873
BsaWI WCCGGW 1 cut(s) 460
BsaXI ACNNNNNCTCC 4 cut(s) 279, 309, 2467, 2497
Bsc4I CCNNNNNNNGG 6 cut(s) 1659, 1820, 2674, 2760, 2879, 2963
Bse118I RCCGGY 2 cut(s) 969, 2544
Bse1I ACTGG 8 cut(s) 644, 803, 1140, 1188, 1728, 1867, 1898, 2342
Bse21I CCTNAGG 1 cut(s) 1789
Bse3DI GCAATG 1 cut(s) 1020
Bse8I GATNNNNATC 1 cut(s) 2952
BseAI TCCGGA 1 cut(s) 460
BseBI CCWGG 5 cut(s) 835, 1074, 1252, 1416, 1852
BseDI CCNNGG 8 cut(s) 868, 1072, 1658, 1851, 1968, 2270, 2286, 2873
BseJI GATNNNNATC 1 cut(s) 2952
BseLI CCNNNNNNNGG 6 cut(s) 1659, 1820, 2674, 2760, 2879, 2963
BseMI GCAATG 1 cut(s) 1020
BseNI ACTGG 8 cut(s) 644, 803, 1140, 1188, 1728, 1867, 1898, 2342
BseRI GAGGAG 2 cut(s) 1174, 2734
BseX3I CGGCCG 1 cut(s) 1941
BseYI CCCAGC 2 cut(s) 141, 472
BsgI GTGCAG 3 cut(s) 2611, 2928, 3072
Bsh1285I CGRYCG 1 cut(s) 1944
BshFI GGCC 6 cut(s) 833, 1423, 1866, 1943, 2548, 3097
BsiEI CGRYCG 1 cut(s) 1944
BsiHKAI GWGCWC 4 cut(s) 460, 1681, 2485, 2856
BsiHKCI CYCGRG 2 cut(s) 2601, 2746
BsiSI CCGG 5 cut(s) 461, 970, 1660, 1922, 2545
BslFI GGGAC 7 cut(s) 124, 204, 1246, 1904, 2165, 2359, 2776
BslI CCNNNNNNNGG 6 cut(s) 1659, 1820, 2674, 2760, 2879, 2963
BsmAI GTCTC 7 cut(s) 1149, 1643, 2203, 2328, 2428, 2664, 3001
BsmFI GGGAC 7 cut(s) 124, 204, 1246, 1904, 2165, 2359, 2776
BsmI GAATGC 2 cut(s) 594, 1771
BsnI GGCC 6 cut(s) 833, 1423, 1866, 1943, 2548, 3097
Bso31I GGTCTC 2 cut(s) 1643, 3001
BsoBI CYCGRG 2 cut(s) 2601, 2746
Bsp119I TTCGAA 1 cut(s) 2422
Bsp1286I GDGCHC 5 cut(s) 215, 460, 1681, 2485, 2856
Bsp13I TCCGGA 1 cut(s) 460
Bsp19I CCATGG 2 cut(s) 1968, 2270
BspACI CCGC 6 cut(s) 1478, 1733, 1937, 1940, 1944, 2768
BspANI GGCC 6 cut(s) 833, 1423, 1866, 1943, 2548, 3097
BspEI TCCGGA 1 cut(s) 460
BspHI TCATGA 3 cut(s) 1312, 1561, 2161
BspLI GGNNCC 6 cut(s) 140, 405, 1000, 2153, 2470, 2781
BspMAI CTGCAG 7 cut(s) 670, 1276, 1933, 2050, 2071, 2761, 3073
BspPI GGATC 8 cut(s) 398, 411, 725, 1111, 1838, 2317, 2948, 2990
BspT104I TTCGAA 1 cut(s) 2422
BspTI CTTAAG 2 cut(s) 14, 1808
BspTNI GGTCTC 2 cut(s) 1643, 3001
BsrDI GCAATG 1 cut(s) 1020
BsrFI RCCGGY 2 cut(s) 969, 2544
BsrI ACTGG 8 cut(s) 644, 803, 1140, 1188, 1728, 1867, 1898, 2342
BssAI RCCGGY 2 cut(s) 969, 2544
BssECI CCNNGG 8 cut(s) 868, 1072, 1658, 1851, 1968, 2270, 2286, 2873
BssSI CACGAG 2 cut(s) 2478, 2672
BssT1I CCWWGG 4 cut(s) 868, 1968, 2270, 2286
Bst2BI CACGAG 2 cut(s) 2478, 2672
Bst2UI CCWGG 5 cut(s) 835, 1074, 1252, 1416, 1852
Bst4CI ACNGT 5 cut(s) 632, 1645, 1884, 2156, 2648
Bst6I CTCTTC 5 cut(s) 354, 1284, 2357, 2426, 2465
BstAFI CTTAAG 2 cut(s) 14, 1808
BstAPI GCANNNNNTGC 4 cut(s) 966, 1768, 2057, 2066
BstBAI YACGTR 1 cut(s) 2141
BstBI TTCGAA 1 cut(s) 2422
BstC8I GCNNGC 2 cut(s) 2081, 2987
BstDSI CCRYGG 3 cut(s) 1968, 2270, 2873
BstENI CCTNNNNNAGG 1 cut(s) 1818
BstH2I RGCGCY 2 cut(s) 704, 1400
BstHHI GCGC 2 cut(s) 703, 1399
BstMAI GTCTC 7 cut(s) 1149, 1643, 2203, 2328, 2428, 2664, 3001
BstMCI CGRYCG 1 cut(s) 1944
BstNI CCWGG 5 cut(s) 835, 1074, 1252, 1416, 1852
BstNSI RCATGY 2 cut(s) 826, 1439
BstSCI CCNGG 7 cut(s) 833, 1072, 1250, 1414, 1658, 1850, 1920
BstSFI CTRYAG 8 cut(s) 666, 1272, 1929, 2019, 2046, 2067, 2757, 3069
BstV2I GAAGAC 2 cut(s) 99, 2578
BstX2I RGATCY 6 cut(s) 403, 730, 1442, 2968, 2995, 3080
BstXI CCANNNNNNTGG 1 cut(s) 793
BstYI RGATCY 6 cut(s) 403, 730, 1442, 2968, 2995, 3080
BstZI CGGCCG 1 cut(s) 1941
Bsu36I CCTNAGG 1 cut(s) 1789
BsuRI GGCC 6 cut(s) 833, 1423, 1866, 1943, 2548, 3097
BtgI CCRYGG 3 cut(s) 1968, 2270, 2873
BtsI GCAGTG 4 cut(s) 2058, 2152, 2754, 3078
BtsIMutI CAGTG 8 cut(s) 114, 201, 637, 1735, 2058, 2152, 2754, 3078
Cac8I GCNNGC 2 cut(s) 2081, 2987
CaiI CAGNNNCTG 3 cut(s) 856, 1952, 2030
CciI TCATGA 3 cut(s) 1312, 1561, 2161
CciNI GCGGCCGC 1 cut(s) 1941
CfoI GCGC 2 cut(s) 703, 1399
Cfr10I RCCGGY 2 cut(s) 969, 2544
Cfr13I GGNCC 6 cut(s) 138, 800, 831, 1455, 2152, 2751
CseI GACGC 1 cut(s) 2583
Csp6I GTAC 4 cut(s) 333, 2135, 2226, 2642
CspCI CAANNNNNGTGG 2 cut(s) 2855, 2890
CviQI GTAC 4 cut(s) 333, 2135, 2226, 2642
DraIII CACNNNGTG 1 cut(s) 1768
EaeI YGGCCR 2 cut(s) 1864, 1941
EagI CGGCCG 1 cut(s) 1941
Eam1104I CTCTTC 5 cut(s) 354, 1284, 2357, 2426, 2465
EarI CTCTTC 5 cut(s) 354, 1284, 2357, 2426, 2465
EciI GGCGGA 1 cut(s) 2783
Ecl136II GAGCTC 1 cut(s) 2854
EclXI CGGCCG 1 cut(s) 1941
Eco130I CCWWGG 4 cut(s) 868, 1968, 2270, 2286
Eco24I GRGCYC 2 cut(s) 215, 2856
Eco31I GGTCTC 2 cut(s) 1643, 3001
Eco32I GATATC 1 cut(s) 177
Eco47I GGWCC 5 cut(s) 138, 800, 1455, 2152, 2751
Eco52I CGGCCG 1 cut(s) 1941
Eco53kI GAGCTC 1 cut(s) 2854
Eco57I CTGAAG 7 cut(s) 498, 1308, 1344, 1908, 2154, 2790, 3059
Eco72I CACGTG 1 cut(s) 2141
Eco81I CCTNAGG 1 cut(s) 1789
Eco88I CYCGRG 2 cut(s) 2601, 2746
EcoICRI GAGCTC 1 cut(s) 2854
EcoNI CCTNNNNNAGG 1 cut(s) 1818
EcoO109I RGGNCCY 2 cut(s) 138, 831
EcoRI GAATTC 1 cut(s) 2405
EcoRII CCWGG 5 cut(s) 833, 1072, 1250, 1414, 1850
EcoRV GATATC 1 cut(s) 177
EcoT14I CCWWGG 4 cut(s) 868, 1968, 2270, 2286
EcoT38I GRGCYC 2 cut(s) 215, 2856
ErhI CCWWGG 4 cut(s) 868, 1968, 2270, 2286
FaqI GGGAC 7 cut(s) 124, 204, 1246, 1904, 2165, 2359, 2776
FauNDI CATATG 2 cut(s) 696, 2314
FbaI TGATCA 1 cut(s) 2158
FblI GTMKAC 1 cut(s) 575
FriOI GRGCYC 2 cut(s) 215, 2856
GlaI GCGC 2 cut(s) 702, 1398
GsaI CCCAGC 2 cut(s) 145, 476
GsuI CTGGAG 3 cut(s) 1171, 1881, 2766
HaeII RGCGCY 2 cut(s) 704, 1400
HaeIII GGCC 6 cut(s) 833, 1423, 1866, 1943, 2548, 3097
HapII CCGG 5 cut(s) 461, 970, 1660, 1922, 2545
HgaI GACGC 1 cut(s) 2583
HhaI GCGC 2 cut(s) 703, 1399
Hin6I GCGC 2 cut(s) 701, 1397
HinP1I GCGC 2 cut(s) 701, 1397
HincII GTYRAC 3 cut(s) 576, 637, 1796
HindII GTYRAC 3 cut(s) 576, 637, 1796
HpaII CCGG 5 cut(s) 461, 970, 1660, 1922, 2545
HphI GGTGA 4 cut(s) 988, 2255, 2275, 2402
Hpy166II GTNNAC 8 cut(s) 576, 637, 748, 800, 1608, 1796, 2644, 2754
Hpy8I GTNNAC 8 cut(s) 576, 637, 748, 800, 1608, 1796, 2644, 2754
Hpy99I CGWCG 1 cut(s) 2931
HpyCH4III ACNGT 5 cut(s) 632, 1645, 1884, 2156, 2648
HpyCH4IV ACGT 3 cut(s) 724, 2133, 2140
HpySE526I ACGT 3 cut(s) 724, 2133, 2140
HspAI GCGC 2 cut(s) 701, 1397
Kpn2I TCCGGA 1 cut(s) 460
Ksp22I TGATCA 1 cut(s) 2158
LmnI GCTCC 9 cut(s) 27, 463, 1475, 1597, 1676, 2468, 2488, 2785, 2851
MaeII ACGT 3 cut(s) 724, 2133, 2140
MaeIII GTNAC 9 cut(s) 238, 720, 1569, 1858, 1891, 2032, 2129, 2216, 2500
MfeI CAATTG 2 cut(s) 374, 2961
MflI RGATCY 6 cut(s) 403, 730, 1442, 2968, 2995, 3080
MhlI GDGCHC 5 cut(s) 215, 460, 1681, 2485, 2856
MlsI TGGCCA 1 cut(s) 1866
MluNI TGGCCA 1 cut(s) 1866
MlyI GAGTC 5 cut(s) 581, 862, 1994, 2205, 2430
MmeI TCCRAC 4 cut(s) 60, 1026, 1180, 2893
Mox20I TGGCCA 1 cut(s) 1866
MroI TCCGGA 1 cut(s) 460
MroXI GAANNNNTTC 2 cut(s) 592, 2511
MscI TGGCCA 1 cut(s) 1866
MseI TTAA 9 cut(s) 15, 432, 683, 1256, 1497, 1809, 1902, 2694, 2976
MslI CAYNNNNRTG 2 cut(s) 1632, 2448
Msp20I TGGCCA 1 cut(s) 1866
MspA1I CMGCKG 5 cut(s) 476, 1937, 1952, 2027, 2072
MspCI CTTAAG 2 cut(s) 14, 1808
MspI CCGG 5 cut(s) 461, 970, 1660, 1922, 2545
MspR9I CCNGG 7 cut(s) 835, 1074, 1252, 1416, 1660, 1852, 1922
MunI CAATTG 2 cut(s) 374, 2961
Mva1269I GAATGC 2 cut(s) 594, 1771
MvaI CCWGG 5 cut(s) 835, 1074, 1252, 1416, 1852
NciI CCSGG 2 cut(s) 1660, 1922
NcoI CCATGG 2 cut(s) 1968, 2270
NdeI CATATG 2 cut(s) 696, 2314
NlaIV GGNNCC 6 cut(s) 140, 405, 1000, 2153, 2470, 2781
NmeAIII GCCGAG 1 cut(s) 895
NmuCI GTSAC 2 cut(s) 720, 2032
NotI GCGGCCGC 1 cut(s) 1941
NspI RCATGY 2 cut(s) 826, 1439
NspV TTCGAA 1 cut(s) 2422
PaeR7I CTCGAG 1 cut(s) 2746
PagI TCATGA 3 cut(s) 1312, 1561, 2161
PciI ACATGT 1 cut(s) 822
PctI GAATGC 2 cut(s) 594, 1771
PdmI GAANNNNTTC 2 cut(s) 592, 2511
PflFI GACNNNGTC 2 cut(s) 571, 632
PfoI TCCNGGA 1 cut(s) 1414
PleI GAGTC 5 cut(s) 580, 861, 1994, 2204, 2430
PmaCI CACGTG 1 cut(s) 2141
PmlI CACGTG 1 cut(s) 2141
PpsI GAGTC 5 cut(s) 580, 861, 1994, 2204, 2430
Ppu21I YACGTR 1 cut(s) 2141
PpuMI RGGWCCY 1 cut(s) 138
PscI ACATGT 1 cut(s) 822
Psp124BI GAGCTC 1 cut(s) 2856
Psp5II RGGWCCY 1 cut(s) 138
Psp6I CCWGG 5 cut(s) 833, 1072, 1250, 1414, 1850
PspCI CACGTG 1 cut(s) 2141
PspFI CCCAGC 2 cut(s) 141, 472
PspGI CCWGG 5 cut(s) 833, 1072, 1250, 1414, 1850
PspN4I GGNNCC 6 cut(s) 140, 405, 1000, 2153, 2470, 2781
PspPI GGNCC 6 cut(s) 138, 800, 831, 1455, 2152, 2751
PspPPI RGGWCCY 1 cut(s) 138
PspXI VCTCGAGB 1 cut(s) 2746
PstI CTGCAG 7 cut(s) 670, 1276, 1933, 2050, 2071, 2761, 3073
PstNI CAGNNNCTG 3 cut(s) 856, 1952, 2030
PsuI RGATCY 6 cut(s) 403, 730, 1442, 2968, 2995, 3080
PsyI GACNNNGTC 2 cut(s) 571, 632
PvuII CAGCTG 4 cut(s) 476, 1952, 2027, 2072
RsaI GTAC 4 cut(s) 334, 2136, 2227, 2643
RsaNI GTAC 4 cut(s) 333, 2135, 2226, 2642
RseI CAYNNNNRTG 2 cut(s) 1632, 2448
SacI GAGCTC 1 cut(s) 2856
SalI GTCGAC 1 cut(s) 574
SaqAI TTAA 9 cut(s) 15, 432, 683, 1256, 1497, 1809, 1902, 2694, 2976
Sau96I GGNCC 6 cut(s) 138, 800, 831, 1455, 2152, 2751
ScaI AGTACT 1 cut(s) 334
SchI GAGTC 5 cut(s) 581, 862, 1994, 2205, 2430
ScrFI CCNGG 7 cut(s) 835, 1074, 1252, 1416, 1660, 1852, 1922
SduI GDGCHC 5 cut(s) 215, 460, 1681, 2485, 2856
SfcI CTRYAG 8 cut(s) 666, 1272, 1929, 2019, 2046, 2067, 2757, 3069
Sfr274I CTCGAG 1 cut(s) 2746
SfuI TTCGAA 1 cut(s) 2422
SinI GGWCC 5 cut(s) 138, 800, 1455, 2152, 2751
SlaI CTCGAG 1 cut(s) 2746
SmiMI CAYNNNNRTG 2 cut(s) 1632, 2448
SmlI CTYRAG 5 cut(s) 14, 133, 1808, 2578, 2746
SmoI CTYRAG 5 cut(s) 14, 133, 1808, 2578, 2746
SsiI CCGC 6 cut(s) 1478, 1733, 1937, 1940, 1944, 2768
SspI AATATT 2 cut(s) 564, 2008
SstI GAGCTC 1 cut(s) 2856
StyD4I CCNGG 7 cut(s) 833, 1072, 1250, 1414, 1658, 1850, 1920
StyI CCWWGG 4 cut(s) 868, 1968, 2270, 2286
TaaI ACNGT 5 cut(s) 632, 1645, 1884, 2156, 2648
TaiI ACGT 3 cut(s) 727, 2136, 2143
TaqI TCGA 7 cut(s) 575, 603, 1575, 1640, 2210, 2422, 2747
TaqII GACCGA 2 cut(s) 1257, 1472
TatI WGTACW 3 cut(s) 332, 2225, 2641
TauI GCSGC 4 cut(s) 1736, 1940, 1943, 1946
Tru1I TTAA 9 cut(s) 15, 432, 683, 1256, 1497, 1809, 1902, 2694, 2976
Tru9I TTAA 9 cut(s) 15, 432, 683, 1256, 1497, 1809, 1902, 2694, 2976
TscAI CASTG 8 cut(s) 121, 201, 637, 1735, 2058, 2152, 2761, 3078
TseFI GTSAC 2 cut(s) 720, 2032
Tsp45I GTSAC 2 cut(s) 720, 2032
TspGWI ACGGA 3 cut(s) 584, 1437, 2363
TspRI CASTG 8 cut(s) 121, 201, 637, 1735, 2058, 2152, 2761, 3078
Tth111I GACNNNGTC 2 cut(s) 571, 632
Vha464I CTTAAG 2 cut(s) 14, 1808
VpaK11BI GGWCC 5 cut(s) 138, 800, 1455, 2152, 2751
XagI CCTNNNNNAGG 1 cut(s) 1818
XapI RAATTY 7 cut(s) 676, 754, 1306, 1318, 1543, 2405, 2507
XbaI TCTAGA 2 cut(s) 1151, 2371
XceI RCATGY 2 cut(s) 826, 1439
XhoI CTCGAG 1 cut(s) 2746
XmiI GTMKAC 1 cut(s) 575
XmnI GAANNNNTTC 2 cut(s) 592, 2511
ZrmI AGTACT 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.