Rorug06G0418200

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0010425
Physical Location & Seq
Forward (+)
55725922 .. 55728563
2642 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0418200.1

Sequence Viewer

Length: 588 bp
ATGCCATGGAGGATGCTTTACTTTAAAACTTTCGACTTATCCTTTTATCATAAGCATCTCGCAGTTTTGGACAATCGACCATCTGTGGGCAGTAACTTACAAAATATCTCACAACTCTCTGAGCTGCAAAGCTGTGACTTGGCTTTATCATGTGATGTACAAAGAGCTTCTCAACTGTCTATAGCTTGTTCTAGTTTACTCTCTATAAATCTTCGCTGGAAGATTCTTTATCAAGATCATAAAACTGTAGTGTCAGTAGAGCTGCTGTGTTCAAAGTGCAGGAAAAAGGTGATGAAGTTAGTTGCAACAGTAGAAGGGATAACTTCCATTGTCCTGGACCCGTCAAAAAATACCGTGACAGTAACCGGGGAAGCCGATCCGGTAAAGATCATTCACAAGGTGAGGAAGTTCAGAAAATCTGCTTCGGTTGTGAGCATCGGTCCTCCAAAGCCGGAAGAGAAGAAGGATGAGAAGAAAGACAGAGACGGCCATGGCCTTGTTCCTTACATACCAAAGACATGTCAAAGATGTGATGTCTGGTATGTGGTTGCTGAAGATGGTTATAACAATTACTGTTCCGTTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009651 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0035556 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EDR1 Pkinase_Tyr

Protein Analysis

195

Amino Acids

22.05

Weight (kDa)

9.06

Isoelectric Point (pI)

46.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 84 - 137 4.6e-12 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 564
AclWI GGATC 1 cut(s) 371
AcoI YGGCCR 1 cut(s) 487
AcuI CTGAAG 1 cut(s) 573
AdeI CACNNNGTG 1 cut(s) 400
AfaI GTAC 1 cut(s) 159
AfiI CCNNNNNNNGG 1 cut(s) 86
AflIII ACRYGT 1 cut(s) 518
AgsI TTSAA 1 cut(s) 273
AjnI CCWGG 1 cut(s) 333
AluBI AGCT 5 cut(s) 124, 132, 167, 185, 262
AluI AGCT 5 cut(s) 124, 132, 167, 185, 262
Alw26I GTCTC 1 cut(s) 477
AlwI GGATC 1 cut(s) 371
AoxI GGCC 2 cut(s) 487, 493
ApeKI GCWGC 2 cut(s) 124, 262
AspS9I GGNCC 2 cut(s) 337, 440
AsuC2I CCSGG 1 cut(s) 367
AsuHPI GGTGA 2 cut(s) 301, 412
AvaII GGWCC 2 cut(s) 337, 440
BbvI GCAGC 2 cut(s) 111, 249
BccI CCATC 2 cut(s) 88, 551
BceAI ACGGC 1 cut(s) 502
BciT130I CCWGG 1 cut(s) 335
BcnI CCSGG 1 cut(s) 367
BcoDI GTCTC 1 cut(s) 477
BfaI CTAG 1 cut(s) 192
BfmI CTRYAG 2 cut(s) 180, 246
BisI GCNGC 2 cut(s) 125, 263
BlsI GCNGC 2 cut(s) 126, 264
Bme1390I CCNGG 2 cut(s) 335, 367
Bme18I GGWCC 2 cut(s) 337, 440
BmgT120I GGNCC 2 cut(s) 337, 440
BmiI GGNNCC 1 cut(s) 339
BmrFI CCNGG 2 cut(s) 335, 367
BmsI GCATC 3 cut(s) 3, 64, 444
BpuMI CCSGG 1 cut(s) 367
BsaJI CCNNGG 3 cut(s) 5, 366, 490
BsaWI WCCGGW 1 cut(s) 379
Bsc4I CCNNNNNNNGG 1 cut(s) 86
BseBI CCWGG 1 cut(s) 335
BseDI CCNNGG 3 cut(s) 5, 366, 490
BseGI GGATG 2 cut(s) 18, 472
BseLI CCNNNNNNNGG 1 cut(s) 86
BseMII CTCAG 1 cut(s) 111
BseXI GCAGC 2 cut(s) 111, 249
BsgI GTGCAG 1 cut(s) 298
BshFI GGCC 2 cut(s) 489, 495
BsiSI CCGG 3 cut(s) 366, 380, 452
BslI CCNNNNNNNGG 1 cut(s) 86
BsmAI GTCTC 1 cut(s) 477
BsmBI CGTCTC 1 cut(s) 477
BsnI GGCC 2 cut(s) 489, 495
Bsp1407I TGTACA 1 cut(s) 157
Bsp143I GATC 3 cut(s) 235, 376, 387
Bsp19I CCATGG 2 cut(s) 5, 490
BspANI GGCC 2 cut(s) 489, 495
BspCNI CTCAG 1 cut(s) 112
BspLI GGNNCC 1 cut(s) 339
BspPI GGATC 1 cut(s) 371
BsrGI TGTACA 1 cut(s) 157
BssECI CCNNGG 3 cut(s) 5, 366, 490
BssMI GATC 3 cut(s) 235, 376, 387
BssT1I CCWWGG 2 cut(s) 5, 490
Bst2UI CCWGG 1 cut(s) 335
Bst4CI ACNGT 6 cut(s) 177, 247, 310, 355, 361, 575
Bst6I CTCTTC 1 cut(s) 450
BstAUI TGTACA 1 cut(s) 157
BstDEI CTNAG 1 cut(s) 120
BstDSI CCRYGG 2 cut(s) 5, 490
BstF5I GGATG 2 cut(s) 18, 472
BstKTI GATC 3 cut(s) 238, 379, 390
BstMAI GTCTC 1 cut(s) 477
BstMBI GATC 3 cut(s) 235, 376, 387
BstNI CCWGG 1 cut(s) 335
BstNSI RCATGY 1 cut(s) 522
BstSCI CCNGG 2 cut(s) 333, 365
BstSFI CTRYAG 2 cut(s) 180, 246
BstV1I GCAGC 2 cut(s) 111, 249
BstXI CCANNNNNNTGG 1 cut(s) 334
BsuRI GGCC 2 cut(s) 489, 495
BtgI CCRYGG 2 cut(s) 5, 490
BtsCI GGATG 2 cut(s) 18, 472
Cfr13I GGNCC 2 cut(s) 337, 440
Csp6I GTAC 1 cut(s) 158
CviAII CATG 4 cut(s) 6, 150, 491, 519
CviQI GTAC 1 cut(s) 158
DdeI CTNAG 1 cut(s) 120
DpnI GATC 3 cut(s) 237, 378, 389
DpnII GATC 3 cut(s) 235, 376, 387
DraI TTTAAA 1 cut(s) 25
DraIII CACNNNGTG 1 cut(s) 400
EaeI YGGCCR 1 cut(s) 487
Eam1104I CTCTTC 1 cut(s) 450
EarI CTCTTC 1 cut(s) 450
Eco130I CCWWGG 2 cut(s) 5, 490
Eco47I GGWCC 2 cut(s) 337, 440
Eco57I CTGAAG 1 cut(s) 573
EcoRII CCWGG 1 cut(s) 333
EcoT14I CCWWGG 2 cut(s) 5, 490
ErhI CCWWGG 2 cut(s) 5, 490
Esp3I CGTCTC 1 cut(s) 477
FaeI CATG 4 cut(s) 9, 153, 494, 522
FatI CATG 4 cut(s) 5, 149, 490, 518
Fnu4HI GCNGC 2 cut(s) 125, 263
FokI GGATG 2 cut(s) 25, 479
Fsp4HI GCNGC 2 cut(s) 125, 263
FspBI CTAG 1 cut(s) 192
GluI GCNGC 2 cut(s) 125, 263
HaeIII GGCC 2 cut(s) 489, 495
HapII CCGG 3 cut(s) 366, 380, 452
Hin1II CATG 4 cut(s) 9, 153, 494, 522
HinfI GANTC 1 cut(s) 223
HpaII CCGG 3 cut(s) 366, 380, 452
HphI GGTGA 2 cut(s) 301, 412
Hpy166II GTNNAC 1 cut(s) 197
Hpy188I TCNGA 2 cut(s) 121, 413
Hpy188III TCNNGA 1 cut(s) 233
Hpy8I GTNNAC 1 cut(s) 197
HpyAV CCTTC 2 cut(s) 308, 457
HpyCH4III ACNGT 6 cut(s) 177, 247, 310, 355, 361, 575
HpyCH4V TGCA 3 cut(s) 127, 279, 305
HpyF3I CTNAG 1 cut(s) 120
Hsp92II CATG 4 cut(s) 9, 153, 494, 522
Kzo9I GATC 3 cut(s) 235, 376, 387
LpnPI CCDG 8 cut(s) 202, 265, 320, 347, 379, 393, 465, 523
Lsp1109I GCAGC 2 cut(s) 111, 249
LweI GCATC 3 cut(s) 3, 64, 444
MaeI CTAG 1 cut(s) 192
MaeIII GTNAC 4 cut(s) 92, 134, 355, 361
MalI GATC 3 cut(s) 237, 378, 389
MboI GATC 3 cut(s) 235, 376, 387
MboII GAAGA 6 cut(s) 203, 232, 467, 472, 484, 566
MluCI AATT 1 cut(s) 568
MnlI CCTC 3 cut(s) 3, 396, 453
MseI TTAA 1 cut(s) 24
MspI CCGG 3 cut(s) 366, 380, 452
MspR9I CCNGG 2 cut(s) 335, 367
MvaI CCWGG 1 cut(s) 335
NciI CCSGG 1 cut(s) 367
NcoI CCATGG 2 cut(s) 5, 490
NdeII GATC 3 cut(s) 235, 376, 387
NlaIII CATG 4 cut(s) 9, 153, 494, 522
NlaIV GGNNCC 1 cut(s) 339
NmuCI GTSAC 2 cut(s) 134, 355
NspI RCATGY 1 cut(s) 522
PciI ACATGT 1 cut(s) 518
PfeI GAWTC 1 cut(s) 223
PfoI TCCNGGA 1 cut(s) 333
PkrI GCNGC 2 cut(s) 126, 264
PscI ACATGT 1 cut(s) 518
PsiI TTATAA 1 cut(s) 564
Psp6I CCWGG 1 cut(s) 333
PspGI CCWGG 1 cut(s) 333
PspN4I GGNNCC 1 cut(s) 339
PspPI GGNCC 2 cut(s) 337, 440
RsaI GTAC 1 cut(s) 159
RsaNI GTAC 1 cut(s) 158
SaqAI TTAA 1 cut(s) 24
SatI GCNGC 2 cut(s) 125, 263
Sau3AI GATC 3 cut(s) 235, 376, 387
Sau96I GGNCC 2 cut(s) 337, 440
ScrFI CCNGG 2 cut(s) 335, 367
SetI ASST 7 cut(s) 126, 134, 169, 187, 264, 291, 402
SfaNI GCATC 3 cut(s) 3, 64, 444
SfcI CTRYAG 2 cut(s) 180, 246
SinI GGWCC 2 cut(s) 337, 440
Sse9I AATT 1 cut(s) 568
SspMI CTAG 1 cut(s) 192
StyD4I CCNGG 2 cut(s) 333, 365
StyI CCWWGG 2 cut(s) 5, 490
TaaI ACNGT 6 cut(s) 177, 247, 310, 355, 361, 575
TaqI TCGA 2 cut(s) 33, 76
TaqII GACCGA 1 cut(s) 428
TasI AATT 1 cut(s) 568
TatI WGTACW 1 cut(s) 157
TfiI GAWTC 1 cut(s) 223
Tru1I TTAA 1 cut(s) 24
Tru9I TTAA 1 cut(s) 24
TseFI GTSAC 2 cut(s) 134, 355
TseI GCWGC 2 cut(s) 124, 262
Tsp45I GTSAC 2 cut(s) 134, 355
TspDTI ATGAA 1 cut(s) 308
TspGWI ACGGA 1 cut(s) 568
VpaK11BI GGWCC 2 cut(s) 337, 440
XceI RCATGY 1 cut(s) 522
XspI CTAG 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.