FvH4_5g17610

Cell division cycle-associated protein 7-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0016343
Physical Location & Seq
Reverse (-)
10074132 .. 10076619
2488 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g17610.t1

Sequence Viewer

Length: 840 bp
ATGGGAAGGCTCCTCCGAACCAAGAATGACTATGAAGATCTCAGAAATGCTCGCATAGTACAAAACCAGGCTCGCTTGCATTCGTTGGGAGTACATAACACCCTCTCCGAGCTCCACTCCATTTCTTCATCTGCGAAATCACAAAAGGCCCATGTCAGGAAGTACTGCCAGAAGGTCTATGATCTCACCTCTTTGCGCCGATCGGACCGATTGAAAGGACCATCCACCACTCAAGCAATAACAACAACACCAAATCACACTTCATCATCAAGGTTGACAGTGGGTGTAAATGAAGAGAGTGAAGAGGGCACAAAGAGAAGGCCTCTAAATGCGCCTTTTGTGGAACTGAAGGCTTCGAAGATGGAGCTAGTTTCGTCTGAGTCTTGGTCTCGGCGTTGTGATAGCAAGAGCCGCGGCACTGTCTATCACTCTGTCTTCGGGATTTGCTGCCATTTTTGCAGGCAGAAGAAGTTGTGCGGTGAAGAAGATTGCAAGAGATGTGGCACTCTAGATATGGATCAACCATGCATTGGAAAAACAGAATGTTCAGTTTGTCACTCTACCAATGGTGTTCTTTGCCGCGGTTGTCTCAAGGTTAGGTATGGTGAAGAAATGGAAGAAGTGAGAGGAAATAAAGATTGGATGTGCCCACATTGCATAGAAGAAAAAGGAGTAAGACCTTACTGGATATGTAACAGCTCATTCTGCATGAAGAAGCGAAAGATGGTTCCGACTGGGATAGCAATATACAGATGTCAGGAGATGGGATACAAGTCAGTGGCACATCTGGTAATGGATGAACTTAAACGAAAAATGAATCGACATGGAGCAACTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-4CXXC_R1

Protein Analysis

280

Amino Acids

31.79

Weight (kDa)

9.33

Isoelectric Point (pI)

53.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-4CXXC_R1 PF10497 143 - 263 4e-25 Zinc-finger domain of monoamine-oxidase A repressor R1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016343)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17610 FvH4_5g17610 FvH4_5g17610
prunus_persica Prupe.5G235800_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0178051
rosa_laevigata RLG00000005476
rosa_multiflora Rmu_sc0000425.1_g000005
rosa_roxburghii Rroxscaffold_3G00275220
rosa_rugosa Rorug06G0413000 Rorug06G0413100
rosa_samantha Rh7AG012300 Rh7BG012200 Rh7CG012200 Rh7DG012500
rosa_wichuraiana Rw7G000970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 530
AccII CGCG 2 cut(s) 414, 582
AciI CCGC 5 cut(s) 412, 414, 477, 580, 582
AclWI GGATC 1 cut(s) 525
AcuI CTGAAG 1 cut(s) 368
AfaI GTAC 3 cut(s) 60, 93, 164
AfiI CCNNNNNNNGG 2 cut(s) 156, 530
AgsI TTSAA 1 cut(s) 214
AjnI CCWGG 1 cut(s) 66
AjuI GAANNNNNNNTTGG 4 cut(s) 244, 276, 622, 654
AluBI AGCT 3 cut(s) 112, 367, 699
AluI AGCT 3 cut(s) 112, 367, 699
Alw21I GWGCWC 1 cut(s) 114
Alw26I GTCTC 2 cut(s) 393, 593
AlwI GGATC 1 cut(s) 525
AoxI GGCC 2 cut(s) 147, 320
ApeKI GCWGC 1 cut(s) 447
AspLEI GCGC 2 cut(s) 198, 334
AspS9I GGNCC 3 cut(s) 148, 205, 218
AsuHPI GGTGA 3 cut(s) 178, 491, 617
AsuII TTCGAA 1 cut(s) 356
AvaII GGWCC 2 cut(s) 205, 218
BaeGI GKGCMC 2 cut(s) 311, 650
BanII GRGCYC 1 cut(s) 114
BbsI GAAGAC 1 cut(s) 427
Bbv12I GWGCWC 1 cut(s) 114
BbvI GCAGC 1 cut(s) 434
BccI CCATC 4 cut(s) 229, 355, 718, 757
BciT130I CCWGG 1 cut(s) 68
BciVI GTATCC 1 cut(s) 761
BcoDI GTCTC 2 cut(s) 393, 593
BfaI CTAG 2 cut(s) 368, 509
BfuI GTATCC 1 cut(s) 761
BglII AGATCT 1 cut(s) 37
BisI GCNGC 4 cut(s) 412, 415, 448, 580
BlsI GCNGC 4 cut(s) 413, 416, 449, 581
BmcAI AGTACT 1 cut(s) 164
Bme1390I CCNGG 1 cut(s) 68
Bme18I GGWCC 2 cut(s) 205, 218
BmgT120I GGNCC 3 cut(s) 148, 205, 218
BmiI GGNNCC 2 cut(s) 11, 729
BmrFI CCNGG 1 cut(s) 68
BmrI ACTGGG 1 cut(s) 744
BmuI ACTGGG 1 cut(s) 744
BpiI GAAGAC 1 cut(s) 427
BplI GAGNNNNNCTC 4 cut(s) 101, 133, 307, 339
Bpu14I TTCGAA 1 cut(s) 356
BpuEI CTTGAG 2 cut(s) 216, 575
BsaBI GATNNNNATC 1 cut(s) 516
BsaI GGTCTC 1 cut(s) 393
BsaJI CCNNGG 2 cut(s) 412, 580
BsaXI ACNNNNNCTCC 2 cut(s) 89, 119
Bsc4I CCNNNNNNNGG 2 cut(s) 156, 530
Bse1I ACTGG 2 cut(s) 689, 739
Bse3DI GCAATG 1 cut(s) 652
Bse8I GATNNNNATC 1 cut(s) 516
BseBI CCWGG 1 cut(s) 68
BseDI CCNNGG 2 cut(s) 412, 580
BseGI GGATG 3 cut(s) 221, 648, 802
BseJI GATNNNNATC 1 cut(s) 516
BseLI CCNNNNNNNGG 2 cut(s) 156, 530
BseMI GCAATG 1 cut(s) 652
BseMII CTCAG 2 cut(s) 55, 369
BseNI ACTGG 2 cut(s) 689, 739
BseSI GKGCMC 2 cut(s) 311, 650
BseXI GCAGC 1 cut(s) 434
Bsh1236I CGCG 2 cut(s) 414, 582
Bsh1285I CGRYCG 1 cut(s) 203
BshFI GGCC 2 cut(s) 149, 322
BsiEI CGRYCG 1 cut(s) 203
BsiHKAI GWGCWC 1 cut(s) 114
BslI CCNNNNNNNGG 2 cut(s) 156, 530
BsmAI GTCTC 2 cut(s) 393, 593
BsmI GAATGC 1 cut(s) 79
BsnI GGCC 2 cut(s) 149, 322
Bso31I GGTCTC 1 cut(s) 393
Bsp119I TTCGAA 1 cut(s) 356
Bsp1286I GDGCHC 3 cut(s) 114, 311, 650
Bsp143I GATC 4 cut(s) 37, 181, 200, 517
BspACI CCGC 5 cut(s) 412, 414, 477, 580, 582
BspANI GGCC 2 cut(s) 149, 322
BspCNI CTCAG 2 cut(s) 54, 370
BspFNI CGCG 2 cut(s) 414, 582
BspLI GGNNCC 2 cut(s) 11, 729
BspPI GGATC 1 cut(s) 525
BspT104I TTCGAA 1 cut(s) 356
BspTNI GGTCTC 1 cut(s) 393
BsrDI GCAATG 1 cut(s) 652
BsrI ACTGG 2 cut(s) 689, 739
BssECI CCNNGG 2 cut(s) 412, 580
BssMI GATC 4 cut(s) 37, 181, 200, 517
Bst2UI CCWGG 1 cut(s) 68
Bst4CI ACNGT 2 cut(s) 280, 421
Bst6I CTCTTC 2 cut(s) 288, 297
BstBI TTCGAA 1 cut(s) 356
BstC8I GCNNGC 4 cut(s) 52, 73, 77, 461
BstDEI CTNAG 3 cut(s) 41, 378, 834
BstDSI CCRYGG 2 cut(s) 412, 580
BstF5I GGATG 3 cut(s) 221, 648, 802
BstFNI CGCG 2 cut(s) 414, 582
BstHHI GCGC 2 cut(s) 198, 334
BstKTI GATC 4 cut(s) 40, 184, 203, 520
BstMAI GTCTC 2 cut(s) 393, 593
BstMBI GATC 4 cut(s) 37, 181, 200, 517
BstMCI CGRYCG 1 cut(s) 203
BstMWI GCNNNNNNNGC 4 cut(s) 411, 456, 654, 705
BstNI CCWGG 1 cut(s) 68
BstSCI CCNGG 1 cut(s) 66
BstSLI GKGCMC 2 cut(s) 311, 650
BstUI CGCG 2 cut(s) 414, 582
BstV1I GCAGC 1 cut(s) 434
BstV2I GAAGAC 1 cut(s) 427
BstX2I RGATCY 1 cut(s) 37
BstYI RGATCY 1 cut(s) 37
BsuI GTATCC 1 cut(s) 761
BsuRI GGCC 2 cut(s) 149, 322
BtgI CCRYGG 2 cut(s) 412, 580
BtsCI GGATG 3 cut(s) 221, 648, 802
BtsIMutI CAGTG 3 cut(s) 285, 417, 783
Cac8I GCNNGC 4 cut(s) 52, 73, 77, 461
CfoI GCGC 2 cut(s) 198, 334
Cfr13I GGNCC 3 cut(s) 148, 205, 218
Cfr42I CCGCGG 2 cut(s) 415, 583
CpoI CGGWCCG 1 cut(s) 205
Csp6I GTAC 3 cut(s) 59, 92, 163
CspCI CAANNNNNGTGG 2 cut(s) 481, 516
CspI CGGWCCG 1 cut(s) 205
CviAII CATG 4 cut(s) 152, 525, 709, 824
CviJI RGCY 9 cut(s) 10, 71, 112, 149, 322, 353, 367, 411, 699
CviKI_1 RGCY 9 cut(s) 10, 71, 112, 149, 322, 353, 367, 411, 699
CviQI GTAC 3 cut(s) 59, 92, 163
DdeI CTNAG 3 cut(s) 41, 378, 834
DpnI GATC 4 cut(s) 39, 183, 202, 519
DpnII GATC 4 cut(s) 37, 181, 200, 517
Eam1104I CTCTTC 2 cut(s) 288, 297
EarI CTCTTC 2 cut(s) 288, 297
Ecl136II GAGCTC 1 cut(s) 112
Eco147I AGGCCT 1 cut(s) 322
Eco24I GRGCYC 1 cut(s) 114
Eco31I GGTCTC 1 cut(s) 393
Eco47I GGWCC 2 cut(s) 205, 218
Eco53kI GAGCTC 1 cut(s) 112
Eco57I CTGAAG 1 cut(s) 368
EcoICRI GAGCTC 1 cut(s) 112
EcoRII CCWGG 1 cut(s) 66
EcoT22I ATGCAT 1 cut(s) 530
EcoT38I GRGCYC 1 cut(s) 114
FaeI CATG 4 cut(s) 155, 528, 712, 827
FatI CATG 4 cut(s) 151, 524, 708, 823
Fnu4HI GCNGC 4 cut(s) 412, 415, 448, 580
FokI GGATG 3 cut(s) 208, 655, 809
FriOI GRGCYC 1 cut(s) 114
Fsp4HI GCNGC 4 cut(s) 412, 415, 448, 580
FspBI CTAG 2 cut(s) 368, 509
GlaI GCGC 2 cut(s) 197, 333
GluI GCNGC 4 cut(s) 412, 415, 448, 580
HaeIII GGCC 2 cut(s) 149, 322
HhaI GCGC 2 cut(s) 198, 334
Hin1II CATG 4 cut(s) 155, 528, 712, 827
Hin6I GCGC 2 cut(s) 196, 332
HinP1I GCGC 2 cut(s) 196, 332
HincII GTYRAC 1 cut(s) 276
HindII GTYRAC 1 cut(s) 276
HinfI GANTC 2 cut(s) 380, 817
HphI GGTGA 3 cut(s) 178, 491, 617
Hpy166II GTNNAC 1 cut(s) 276
Hpy188I TCNGA 6 cut(s) 17, 44, 109, 205, 379, 732
Hpy188III TCNNGA 4 cut(s) 157, 439, 509, 758
Hpy8I GTNNAC 1 cut(s) 276
HpyAV CCTTC 3 cut(s) 166, 312, 343
HpyCH4III ACNGT 2 cut(s) 280, 421
HpyCH4V TGCA 6 cut(s) 79, 459, 492, 528, 657, 708
HpyF10VI GCNNNNNNNGC 4 cut(s) 411, 456, 654, 705
HpyF3I CTNAG 3 cut(s) 41, 378, 834
Hsp92II CATG 4 cut(s) 155, 528, 712, 827
HspAI GCGC 2 cut(s) 196, 332
KspI CCGCGG 2 cut(s) 415, 583
Kzo9I GATC 4 cut(s) 37, 181, 200, 517
LmnI GCTCC 4 cut(s) 15, 117, 364, 827
LpnPI CCDG 9 cut(s) 53, 80, 142, 182, 445, 670, 720, 743, 773
Lsp1109I GCAGC 1 cut(s) 434
MaeI CTAG 2 cut(s) 368, 509
MaeIII GTNAC 2 cut(s) 554, 692
MalI GATC 4 cut(s) 39, 183, 202, 519
MboI GATC 4 cut(s) 37, 181, 200, 517
MflI RGATCY 1 cut(s) 37
MhlI GDGCHC 3 cut(s) 114, 311, 650
MlyI GAGTC 1 cut(s) 389
MmeI TCCRAC 1 cut(s) 755
MnlI CCTC 6 cut(s) 23, 113, 199, 298, 333, 620
Mph1103I ATGCAT 1 cut(s) 530
MseI TTAA 1 cut(s) 804
MspA1I CMGCKG 2 cut(s) 414, 582
MspR9I CCNGG 1 cut(s) 68
Mva1269I GAATGC 1 cut(s) 79
MvaI CCWGG 1 cut(s) 68
MvnI CGCG 2 cut(s) 414, 582
MwoI GCNNNNNNNGC 4 cut(s) 411, 456, 654, 705
NdeII GATC 4 cut(s) 37, 181, 200, 517
NlaIII CATG 4 cut(s) 155, 528, 712, 827
NlaIV GGNNCC 2 cut(s) 11, 729
NmeAIII GCCGAG 1 cut(s) 370
NmuCI GTSAC 1 cut(s) 554
NsiI ATGCAT 1 cut(s) 530
NspV TTCGAA 1 cut(s) 356
PceI AGGCCT 1 cut(s) 322
PctI GAATGC 1 cut(s) 79
PfeI GAWTC 1 cut(s) 817
PflMI CCANNNNNTGG 1 cut(s) 530
PkrI GCNGC 4 cut(s) 413, 416, 449, 581
Ple19I CGATCG 1 cut(s) 203
PleI GAGTC 1 cut(s) 388
PpsI GAGTC 1 cut(s) 388
Psp124BI GAGCTC 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 66
PspGI CCWGG 1 cut(s) 66
PspN4I GGNNCC 2 cut(s) 11, 729
PspPI GGNCC 3 cut(s) 148, 205, 218
PsuI RGATCY 1 cut(s) 37
PvuI CGATCG 1 cut(s) 203
RsaI GTAC 3 cut(s) 60, 93, 164
RsaNI GTAC 3 cut(s) 59, 92, 163
Rsr2I CGGWCCG 1 cut(s) 205
RsrII CGGWCCG 1 cut(s) 205
SacI GAGCTC 1 cut(s) 114
SacII CCGCGG 2 cut(s) 415, 583
SaqAI TTAA 1 cut(s) 804
SatI GCNGC 4 cut(s) 412, 415, 448, 580
Sau3AI GATC 4 cut(s) 37, 181, 200, 517
Sau96I GGNCC 3 cut(s) 148, 205, 218
ScaI AGTACT 1 cut(s) 164
SchI GAGTC 1 cut(s) 389
ScrFI CCNGG 1 cut(s) 68
SduI GDGCHC 3 cut(s) 114, 311, 650
SetI ASST 9 cut(s) 114, 177, 191, 275, 369, 597, 602, 682, 701
Sfr303I CCGCGG 2 cut(s) 415, 583
SfuI TTCGAA 1 cut(s) 356
SgrBI CCGCGG 2 cut(s) 415, 583
SinI GGWCC 2 cut(s) 205, 218
SmlI CTYRAG 2 cut(s) 231, 590
SmoI CTYRAG 2 cut(s) 231, 590
SseBI AGGCCT 1 cut(s) 322
SsiI CCGC 5 cut(s) 412, 414, 477, 580, 582
SspMI CTAG 2 cut(s) 368, 509
SstI GAGCTC 1 cut(s) 114
StuI AGGCCT 1 cut(s) 322
StyD4I CCNGG 1 cut(s) 66
TaaI ACNGT 2 cut(s) 280, 421
TaqI TCGA 2 cut(s) 356, 820
TaqII GACCGA 1 cut(s) 222
TatI WGTACW 3 cut(s) 58, 91, 162
TauI GCSGC 3 cut(s) 414, 417, 582
TfiI GAWTC 1 cut(s) 817
Tru1I TTAA 1 cut(s) 804
Tru9I TTAA 1 cut(s) 804
TscAI CASTG 3 cut(s) 285, 424, 783
TseFI GTSAC 1 cut(s) 554
TseI GCWGC 1 cut(s) 447
Tsp45I GTSAC 1 cut(s) 554
TspDTI ATGAA 7 cut(s) 48, 117, 252, 306, 725, 813, 830
TspRI CASTG 3 cut(s) 285, 424, 783
Van91I CCANNNNNTGG 1 cut(s) 530
VpaK11BI GGWCC 2 cut(s) 205, 218
XbaI TCTAGA 1 cut(s) 508
XspI CTAG 2 cut(s) 368, 509
ZrmI AGTACT 1 cut(s) 164
Zsp2I ATGCAT 1 cut(s) 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.