Rh7CG012200

Cell division cycle-associated protein 7-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0016343
Physical Location & Seq
Forward (+)
954543 .. 956912
2370 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG012200.1

Sequence Viewer

Length: 888 bp
ATGCCTTCAAGACCGTTGAACTCTGCAGGAGGAAAAGTAACTCTCTGTCACACTGTGTTACCATTCGAGTGGAAGCAGAAAACAACAATGGGAAGGCTCCTCCGAACCAAGAGTGACTATGAAGATCTCAGAAATGCTCGCATATTACAAAACCAGGCTCGTTTGAATTCGCTGGGAGTTCATAAGACTCTCTCCGACCTCCACTCCATTTCTTCATCAGCAAAACCACCAAAGGCCCATGTCAGAAAGCACTGCAAGAAGGTCTATGATCTCACCTCTTTGCGCCGATCGGACCGATTGAAGGGAACAGCTACCACTCTAGCAACAACAACAACCCCAAATAATACTTCATCTCGACGATCAAGGTTGACAGAAGTGGGTGGAAGTGGAGAGAGTGAGGAGGGGAATAAAAGGAGGCCTGCAAATGCGCCTTTTGTGGAAGTAAAGGGTTCGGAGATGCAGCTAGTTTCGTCTGAGTCTTGGGCTCGGCGTTGTGATAGCAAGAGCCGCGGCAGTGTCTATCATTCTGTTTTCGGGATTTGCTGCCATTTTTGCAGGCAAAAGAAGTTGTGTGGTGAAGAAGATTGCAAGCGATGTGGTACTCTTGATATGGACCAACCTTGCATTGGAAAAACAGATTGTTCAGTTTGTCACTCTACCAATGGTGTTCTTTGCCGGGGTTGTCTCAAGGTTAGGTATGGTGAAGAAATGGAGGAAGTGAGAGAAAACAAAGATTGGATGTGCCCACATTGCATAGAAGAAAAAGGAGTAAGACCTTACTGGATATGTAACAGGTATGTTCATGACACAATACATTTGCTAATTCAACTTTATGTGCTCATGATAGAGAGACTTACTGGGGATTTAATCTTCACTTTGTGTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-4CXXC_R1

Protein Analysis

295

Amino Acids

33.37

Weight (kDa)

9.15

Isoelectric Point (pI)

54.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-4CXXC_R1 PF10497 175 - 265 7.4e-14 Zinc-finger domain of monoamine-oxidase A repressor R1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016343)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17610 FvH4_5g17610 FvH4_5g17610
prunus_persica Prupe.5G235800_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0178051
rosa_laevigata RLG00000005476
rosa_multiflora Rmu_sc0000425.1_g000005
rosa_roxburghii Rroxscaffold_3G00275220
rosa_rugosa Rorug06G0413000 Rorug06G0413100
rosa_samantha Rh7AG012300 Rh7BG012200 Rh7CG012200 Rh7DG012500
rosa_wichuraiana Rw7G000970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 510
AciI CCGC 2 cut(s) 508, 510
AcsI RAATTY 1 cut(s) 166
AdeI CACNNNGTG 2 cut(s) 55, 879
AfaI GTAC 1 cut(s) 601
AfiI CCNNNNNNNGG 2 cut(s) 301, 626
AgsI TTSAA 5 cut(s) 9, 19, 166, 301, 827
AjnI CCWGG 1 cut(s) 153
AjuI GAANNNNNNNTTGG 2 cut(s) 331, 363
AluBI AGCT 2 cut(s) 311, 463
AluI AGCT 2 cut(s) 311, 463
Alw21I GWGCWC 1 cut(s) 840
Alw26I GTCTC 2 cut(s) 689, 844
AoxI GGCC 2 cut(s) 234, 416
ApeKI GCWGC 2 cut(s) 460, 543
ApoI RAATTY 1 cut(s) 166
AspLEI GCGC 2 cut(s) 285, 430
AspS9I GGNCC 3 cut(s) 235, 292, 613
AsuC2I CCSGG 1 cut(s) 677
AsuHPI GGTGA 3 cut(s) 265, 587, 713
AvaII GGWCC 2 cut(s) 292, 613
BaeGI GKGCMC 1 cut(s) 746
BanII GRGCYC 1 cut(s) 487
Bbv12I GWGCWC 1 cut(s) 840
BbvI GCAGC 2 cut(s) 472, 530
BciT130I CCWGG 1 cut(s) 155
BcnI CCSGG 1 cut(s) 677
BcoDI GTCTC 2 cut(s) 689, 844
BfaI CTAG 2 cut(s) 320, 464
BfmI CTRYAG 1 cut(s) 24
BglII AGATCT 1 cut(s) 124
BisI GCNGC 4 cut(s) 461, 508, 511, 544
BlsI GCNGC 4 cut(s) 462, 509, 512, 545
Bme1390I CCNGG 2 cut(s) 155, 677
Bme18I GGWCC 2 cut(s) 292, 613
BmgT120I GGNCC 3 cut(s) 235, 292, 613
BmiI GGNNCC 1 cut(s) 98
BmrFI CCNGG 2 cut(s) 155, 677
BmrI ACTGGG 1 cut(s) 867
BmsI GCATC 1 cut(s) 447
BmuI ACTGGG 1 cut(s) 867
BpuEI CTTGAG 1 cut(s) 671
BpuMI CCSGG 1 cut(s) 677
BsaJI CCNNGG 2 cut(s) 508, 676
BsaXI ACNNNNNCTCC 4 cut(s) 21, 51, 188, 218
Bsc4I CCNNNNNNNGG 2 cut(s) 301, 626
Bse1I ACTGG 2 cut(s) 785, 862
Bse3DI GCAATG 1 cut(s) 748
BseBI CCWGG 1 cut(s) 155
BseDI CCNNGG 2 cut(s) 508, 676
BseGI GGATG 1 cut(s) 744
BseLI CCNNNNNNNGG 2 cut(s) 301, 626
BseMI GCAATG 1 cut(s) 748
BseMII CTCAG 2 cut(s) 142, 465
BseNI ACTGG 2 cut(s) 785, 862
BseRI GAGGAG 2 cut(s) 89, 413
BseSI GKGCMC 1 cut(s) 746
BseXI GCAGC 2 cut(s) 472, 530
BseYI CCCAGC 1 cut(s) 172
Bsh1236I CGCG 1 cut(s) 510
Bsh1285I CGRYCG 1 cut(s) 290
BshFI GGCC 2 cut(s) 236, 418
BsiEI CGRYCG 1 cut(s) 290
BsiHKAI GWGCWC 1 cut(s) 840
BsiSI CCGG 1 cut(s) 676
BslI CCNNNNNNNGG 2 cut(s) 301, 626
BsmAI GTCTC 2 cut(s) 689, 844
BsnI GGCC 2 cut(s) 236, 418
Bsp1286I GDGCHC 3 cut(s) 487, 746, 840
Bsp143I GATC 4 cut(s) 124, 268, 287, 359
BspACI CCGC 2 cut(s) 508, 510
BspANI GGCC 2 cut(s) 236, 418
BspCNI CTCAG 2 cut(s) 141, 466
BspFNI CGCG 1 cut(s) 510
BspHI TCATGA 2 cut(s) 802, 840
BspLI GGNNCC 1 cut(s) 98
BspMAI CTGCAG 1 cut(s) 28
BsrDI GCAATG 1 cut(s) 748
BsrI ACTGG 2 cut(s) 785, 862
BssECI CCNNGG 2 cut(s) 508, 676
BssMI GATC 4 cut(s) 124, 268, 287, 359
Bst2UI CCWGG 1 cut(s) 155
Bst4CI ACNGT 2 cut(s) 15, 55
BstC8I GCNNGC 4 cut(s) 139, 420, 557, 590
BstDEI CTNAG 2 cut(s) 128, 474
BstDSI CCRYGG 1 cut(s) 508
BstF5I GGATG 1 cut(s) 744
BstFNI CGCG 1 cut(s) 510
BstHHI GCGC 2 cut(s) 285, 430
BstKTI GATC 4 cut(s) 127, 271, 290, 362
BstMAI GTCTC 2 cut(s) 689, 844
BstMBI GATC 4 cut(s) 124, 268, 287, 359
BstMCI CGRYCG 1 cut(s) 290
BstMWI GCNNNNNNNGC 3 cut(s) 507, 552, 750
BstNI CCWGG 1 cut(s) 155
BstSCI CCNGG 2 cut(s) 153, 675
BstSFI CTRYAG 1 cut(s) 24
BstSLI GKGCMC 1 cut(s) 746
BstUI CGCG 1 cut(s) 510
BstV1I GCAGC 2 cut(s) 472, 530
BstX2I RGATCY 1 cut(s) 124
BstXI CCANNNNNNTGG 1 cut(s) 69
BstYI RGATCY 1 cut(s) 124
BsuRI GGCC 2 cut(s) 236, 418
BtgI CCRYGG 1 cut(s) 508
BtgZI GCGATG 1 cut(s) 607
BtsCI GGATG 1 cut(s) 744
BtsI GCAGTG 2 cut(s) 250, 520
BtsIMutI CAGTG 3 cut(s) 51, 250, 520
Cac8I GCNNGC 4 cut(s) 139, 420, 557, 590
CciI TCATGA 2 cut(s) 802, 840
CfoI GCGC 2 cut(s) 285, 430
Cfr13I GGNCC 3 cut(s) 235, 292, 613
Cfr42I CCGCGG 1 cut(s) 511
CpoI CGGWCCG 1 cut(s) 292
Csp6I GTAC 1 cut(s) 600
CspCI CAANNNNNGTGG 2 cut(s) 577, 612
CspI CGGWCCG 1 cut(s) 292
CviAII CATG 3 cut(s) 239, 803, 841
CviJI RGCY 8 cut(s) 97, 158, 236, 311, 418, 463, 485, 507
CviKI_1 RGCY 8 cut(s) 97, 158, 236, 311, 418, 463, 485, 507
CviQI GTAC 1 cut(s) 600
DdeI CTNAG 2 cut(s) 128, 474
DpnI GATC 4 cut(s) 126, 270, 289, 361
DpnII GATC 4 cut(s) 124, 268, 287, 359
DraIII CACNNNGTG 2 cut(s) 55, 879
Eco147I AGGCCT 1 cut(s) 418
Eco24I GRGCYC 1 cut(s) 487
Eco47I GGWCC 2 cut(s) 292, 613
EcoRI GAATTC 1 cut(s) 166
EcoRII CCWGG 1 cut(s) 153
EcoT38I GRGCYC 1 cut(s) 487
FaeI CATG 3 cut(s) 242, 806, 844
FatI CATG 3 cut(s) 238, 802, 840
Fnu4HI GCNGC 4 cut(s) 461, 508, 511, 544
FokI GGATG 1 cut(s) 751
FriOI GRGCYC 1 cut(s) 487
Fsp4HI GCNGC 4 cut(s) 461, 508, 511, 544
FspBI CTAG 2 cut(s) 320, 464
GlaI GCGC 2 cut(s) 284, 429
GluI GCNGC 4 cut(s) 461, 508, 511, 544
GsaI CCCAGC 1 cut(s) 176
HaeIII GGCC 2 cut(s) 236, 418
HapII CCGG 1 cut(s) 676
HhaI GCGC 2 cut(s) 285, 430
Hin1II CATG 3 cut(s) 242, 806, 844
Hin6I GCGC 2 cut(s) 283, 428
HinP1I GCGC 2 cut(s) 283, 428
HincII GTYRAC 1 cut(s) 369
HindII GTYRAC 1 cut(s) 369
HinfI GANTC 2 cut(s) 187, 476
HpaII CCGG 1 cut(s) 676
HphI GGTGA 3 cut(s) 265, 587, 713
Hpy166II GTNNAC 1 cut(s) 369
Hpy188I TCNGA 7 cut(s) 104, 131, 196, 245, 292, 454, 475
Hpy188III TCNNGA 6 cut(s) 9, 354, 535, 605, 803, 841
Hpy8I GTNNAC 1 cut(s) 369
Hpy99I CGWCG 1 cut(s) 360
HpyAV CCTTC 4 cut(s) 15, 87, 253, 295
HpyCH4III ACNGT 2 cut(s) 15, 55
HpyCH4V TGCA 8 cut(s) 26, 255, 422, 460, 555, 588, 624, 753
HpyF10VI GCNNNNNNNGC 3 cut(s) 507, 552, 750
HpyF3I CTNAG 2 cut(s) 128, 474
Hsp92II CATG 3 cut(s) 242, 806, 844
HspAI GCGC 2 cut(s) 283, 428
KspI CCGCGG 1 cut(s) 511
Kzo9I GATC 4 cut(s) 124, 268, 287, 359
LmnI GCTCC 1 cut(s) 102
Lsp1109I GCAGC 2 cut(s) 472, 530
LweI GCATC 1 cut(s) 447
MaeI CTAG 2 cut(s) 320, 464
MaeIII GTNAC 6 cut(s) 37, 47, 57, 113, 650, 788
MalI GATC 4 cut(s) 126, 270, 289, 361
MboI GATC 4 cut(s) 124, 268, 287, 359
MboII GAAGA 7 cut(s) 134, 204, 590, 593, 716, 770, 862
MflI RGATCY 1 cut(s) 124
MhlI GDGCHC 3 cut(s) 487, 746, 840
MluCI AATT 2 cut(s) 166, 822
MlyI GAGTC 2 cut(s) 181, 485
MmeI TCCRAC 1 cut(s) 219
MnlI CCTC 8 cut(s) 23, 110, 209, 286, 391, 394, 408, 706
MseI TTAA 1 cut(s) 866
MslI CAYNNNNRTG 1 cut(s) 67
MspA1I CMGCKG 1 cut(s) 510
MspI CCGG 1 cut(s) 676
MspR9I CCNGG 2 cut(s) 155, 677
MvaI CCWGG 1 cut(s) 155
MvnI CGCG 1 cut(s) 510
MwoI GCNNNNNNNGC 3 cut(s) 507, 552, 750
NciI CCSGG 1 cut(s) 677
NdeII GATC 4 cut(s) 124, 268, 287, 359
NlaIII CATG 3 cut(s) 242, 806, 844
NlaIV GGNNCC 1 cut(s) 98
NmeAIII GCCGAG 1 cut(s) 466
NmuCI GTSAC 3 cut(s) 47, 113, 650
PagI TCATGA 2 cut(s) 802, 840
PceI AGGCCT 1 cut(s) 418
PkrI GCNGC 4 cut(s) 462, 509, 512, 545
Ple19I CGATCG 1 cut(s) 290
PleI GAGTC 2 cut(s) 181, 484
PpsI GAGTC 2 cut(s) 181, 484
Psp6I CCWGG 1 cut(s) 153
PspFI CCCAGC 1 cut(s) 172
PspGI CCWGG 1 cut(s) 153
PspN4I GGNNCC 1 cut(s) 98
PspPI GGNCC 3 cut(s) 235, 292, 613
PstI CTGCAG 1 cut(s) 28
PsuI RGATCY 1 cut(s) 124
PvuI CGATCG 1 cut(s) 290
RsaI GTAC 1 cut(s) 601
RsaNI GTAC 1 cut(s) 600
RseI CAYNNNNRTG 1 cut(s) 67
Rsr2I CGGWCCG 1 cut(s) 292
RsrII CGGWCCG 1 cut(s) 292
SacII CCGCGG 1 cut(s) 511
SaqAI TTAA 1 cut(s) 866
SatI GCNGC 4 cut(s) 461, 508, 511, 544
Sau3AI GATC 4 cut(s) 124, 268, 287, 359
Sau96I GGNCC 3 cut(s) 235, 292, 613
SchI GAGTC 2 cut(s) 181, 485
ScrFI CCNGG 2 cut(s) 155, 677
SduI GDGCHC 3 cut(s) 487, 746, 840
SfaNI GCATC 1 cut(s) 447
SfcI CTRYAG 1 cut(s) 24
Sfr303I CCGCGG 1 cut(s) 511
SgrBI CCGCGG 1 cut(s) 511
SinI GGWCC 2 cut(s) 292, 613
SmiMI CAYNNNNRTG 1 cut(s) 67
SmlI CTYRAG 1 cut(s) 686
SmoI CTYRAG 1 cut(s) 686
Sse9I AATT 2 cut(s) 166, 822
SseBI AGGCCT 1 cut(s) 418
SsiI CCGC 2 cut(s) 508, 510
SspMI CTAG 2 cut(s) 320, 464
StuI AGGCCT 1 cut(s) 418
StyD4I CCNGG 2 cut(s) 153, 675
TaaI ACNGT 2 cut(s) 15, 55
TaqI TCGA 2 cut(s) 66, 355
TaqII GACCGA 1 cut(s) 309
TasI AATT 2 cut(s) 166, 822
TauI GCSGC 2 cut(s) 510, 513
Tru1I TTAA 1 cut(s) 866
Tru9I TTAA 1 cut(s) 866
TscAI CASTG 3 cut(s) 58, 257, 520
TseFI GTSAC 3 cut(s) 47, 113, 650
TseI GCWGC 2 cut(s) 460, 543
Tsp45I GTSAC 3 cut(s) 47, 113, 650
TspDTI ATGAA 5 cut(s) 135, 170, 204, 339, 791
TspRI CASTG 3 cut(s) 58, 257, 520
VpaK11BI GGWCC 2 cut(s) 292, 613
XapI RAATTY 1 cut(s) 166
XcmI CCANNNNNNNNNTGG 1 cut(s) 623
XspI CTAG 2 cut(s) 320, 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.