Rroxscaffold_3G00275220

Cell division cycle-associated protein 7-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0016343
Physical Location & Seq
Reverse (-)
66717155 .. 66718989
1835 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00275220.1

Sequence Viewer

Length: 714 bp
ATGGGAAGGCTCCTTCGAACCAAGAGTGACTATGAAGATCTCAGAAATGCTCGCATATTACAAAACCAGGCTCGTTTGAATTCGCTGGGAGTTCATAAGACTCTCTCCGACCTCCACTCCATTTCTTCATCAGCAAAACCACCGAAGGCCCATGTCAGAAAGCACTGCAAGAAGGTCTATGATCTCACCTCTTTGCGCCGATCGGACCGATTGAAGGGAACAGCTACCACTCTAGCAACAACAACAACAACAACCCCAAATAATACTTCATCTCGACGATCAAGGTTGACAGAAGTGGGTGGAAGTGGAAAGAGTGAAGATGGAATAAAAGGAGGCCTGCAAATGCGCCTTTTGTGGAAGCAAAAGAAGTTGTGTGGTGAAGAAGATTGCAAGCGATGTGGTACTCTTGATATGGACCAACCTTGCATTGGAAAAACAGATTGTTCAGTTTGTCACTCTACCAATGGTGTTCTTTGCCGGGGTTGTCTCAAGGTTAGGTATGGTGAAGAAATGGAGGAAGTGAGAGAAAACAAAGATTGGATGTGCCCACATTGCATAGAGGAAAAGGGAGTAAGACCTTACTGGATATGTAACAGCTCATTCTGCATGAAGAAGCGAAAGATGGCTCCGACTGGGATAGCAATATACAGATGTCAGGAGATGGGATACAAGTCAGTGGCACATCTGATAATGGATGAACTTCAACGAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-4CXXC_R1

Protein Analysis

237

Amino Acids

26.83

Weight (kDa)

9.46

Isoelectric Point (pI)

48.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-4CXXC_R1 PF10497 128 - 229 1.9e-21 Zinc-finger domain of monoamine-oxidase A repressor R1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016343)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17610 FvH4_5g17610 FvH4_5g17610
prunus_persica Prupe.5G235800_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0178051
rosa_laevigata RLG00000005476
rosa_multiflora Rmu_sc0000425.1_g000005
rosa_roxburghii Rroxscaffold_3G00275220
rosa_rugosa Rorug06G0413000 Rorug06G0413100
rosa_samantha Rh7AG012300 Rh7BG012200 Rh7CG012200 Rh7DG012500
rosa_wichuraiana Rw7G000970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 79
AfaI GTAC 1 cut(s) 403
AfiI CCNNNNNNNGG 2 cut(s) 214, 428
AgsI TTSAA 3 cut(s) 79, 214, 704
AjnI CCWGG 1 cut(s) 66
AjuI GAANNNNNNNTTGG 2 cut(s) 250, 282
AluBI AGCT 2 cut(s) 224, 597
AluI AGCT 2 cut(s) 224, 597
Alw26I GTCTC 1 cut(s) 491
AoxI GGCC 2 cut(s) 147, 334
ApoI RAATTY 1 cut(s) 79
AspLEI GCGC 2 cut(s) 198, 348
AspS9I GGNCC 3 cut(s) 148, 205, 415
AsuC2I CCSGG 1 cut(s) 479
AsuHPI GGTGA 3 cut(s) 178, 389, 515
AsuII TTCGAA 1 cut(s) 16
AvaII GGWCC 2 cut(s) 205, 415
BaeGI GKGCMC 1 cut(s) 548
BccI CCATC 3 cut(s) 314, 616, 655
BciT130I CCWGG 1 cut(s) 68
BciVI GTATCC 1 cut(s) 659
BcnI CCSGG 1 cut(s) 479
BcoDI GTCTC 1 cut(s) 491
BfaI CTAG 1 cut(s) 233
BfuI GTATCC 1 cut(s) 659
BglII AGATCT 1 cut(s) 37
Bme1390I CCNGG 2 cut(s) 68, 479
Bme18I GGWCC 2 cut(s) 205, 415
BmgT120I GGNCC 3 cut(s) 148, 205, 415
BmiI GGNNCC 2 cut(s) 11, 627
BmrFI CCNGG 2 cut(s) 68, 479
BmrI ACTGGG 1 cut(s) 642
BmuI ACTGGG 1 cut(s) 642
Bpu14I TTCGAA 1 cut(s) 16
BpuEI CTTGAG 1 cut(s) 473
BpuMI CCSGG 1 cut(s) 479
BsaJI CCNNGG 1 cut(s) 478
BsaXI ACNNNNNCTCC 2 cut(s) 101, 131
Bsc4I CCNNNNNNNGG 2 cut(s) 214, 428
Bse1I ACTGG 2 cut(s) 587, 637
Bse3DI GCAATG 1 cut(s) 550
BseBI CCWGG 1 cut(s) 68
BseDI CCNNGG 1 cut(s) 478
BseGI GGATG 2 cut(s) 546, 700
BseLI CCNNNNNNNGG 2 cut(s) 214, 428
BseMI GCAATG 1 cut(s) 550
BseMII CTCAG 1 cut(s) 55
BseNI ACTGG 2 cut(s) 587, 637
BseSI GKGCMC 1 cut(s) 548
BseYI CCCAGC 1 cut(s) 85
Bsh1285I CGRYCG 1 cut(s) 203
BshFI GGCC 2 cut(s) 149, 336
BsiEI CGRYCG 1 cut(s) 203
BsiSI CCGG 1 cut(s) 478
BslI CCNNNNNNNGG 2 cut(s) 214, 428
BsmAI GTCTC 1 cut(s) 491
BsnI GGCC 2 cut(s) 149, 336
Bsp119I TTCGAA 1 cut(s) 16
Bsp1286I GDGCHC 1 cut(s) 548
Bsp143I GATC 4 cut(s) 37, 181, 200, 278
BspANI GGCC 2 cut(s) 149, 336
BspCNI CTCAG 1 cut(s) 54
BspLI GGNNCC 2 cut(s) 11, 627
BspT104I TTCGAA 1 cut(s) 16
BsrDI GCAATG 1 cut(s) 550
BsrI ACTGG 2 cut(s) 587, 637
BssECI CCNNGG 1 cut(s) 478
BssMI GATC 4 cut(s) 37, 181, 200, 278
Bst2UI CCWGG 1 cut(s) 68
BstBI TTCGAA 1 cut(s) 16
BstC8I GCNNGC 3 cut(s) 52, 338, 392
BstDEI CTNAG 1 cut(s) 41
BstF5I GGATG 2 cut(s) 546, 700
BstHHI GCGC 2 cut(s) 198, 348
BstKTI GATC 4 cut(s) 40, 184, 203, 281
BstMAI GTCTC 1 cut(s) 491
BstMBI GATC 4 cut(s) 37, 181, 200, 278
BstMCI CGRYCG 1 cut(s) 203
BstMWI GCNNNNNNNGC 2 cut(s) 552, 603
BstNI CCWGG 1 cut(s) 68
BstSCI CCNGG 2 cut(s) 66, 477
BstSLI GKGCMC 1 cut(s) 548
BstX2I RGATCY 1 cut(s) 37
BstYI RGATCY 1 cut(s) 37
BsuI GTATCC 1 cut(s) 659
BsuRI GGCC 2 cut(s) 149, 336
BtgZI GCGATG 1 cut(s) 409
BtsCI GGATG 2 cut(s) 546, 700
BtsI GCAGTG 1 cut(s) 163
BtsIMutI CAGTG 2 cut(s) 163, 681
Cac8I GCNNGC 3 cut(s) 52, 338, 392
CfoI GCGC 2 cut(s) 198, 348
Cfr13I GGNCC 3 cut(s) 148, 205, 415
CpoI CGGWCCG 1 cut(s) 205
Csp6I GTAC 1 cut(s) 402
CspCI CAANNNNNGTGG 2 cut(s) 379, 414
CspI CGGWCCG 1 cut(s) 205
CviAII CATG 2 cut(s) 152, 607
CviJI RGCY 7 cut(s) 10, 71, 149, 224, 336, 597, 626
CviKI_1 RGCY 7 cut(s) 10, 71, 149, 224, 336, 597, 626
CviQI GTAC 1 cut(s) 402
DdeI CTNAG 1 cut(s) 41
DpnI GATC 4 cut(s) 39, 183, 202, 280
DpnII GATC 4 cut(s) 37, 181, 200, 278
Eco147I AGGCCT 1 cut(s) 336
Eco47I GGWCC 2 cut(s) 205, 415
EcoRI GAATTC 1 cut(s) 79
EcoRII CCWGG 1 cut(s) 66
FaeI CATG 2 cut(s) 155, 610
FatI CATG 2 cut(s) 151, 606
FokI GGATG 2 cut(s) 553, 707
FspBI CTAG 1 cut(s) 233
GlaI GCGC 2 cut(s) 197, 347
GsaI CCCAGC 1 cut(s) 89
HaeIII GGCC 2 cut(s) 149, 336
HapII CCGG 1 cut(s) 478
HhaI GCGC 2 cut(s) 198, 348
Hin1II CATG 2 cut(s) 155, 610
Hin6I GCGC 2 cut(s) 196, 346
HinP1I GCGC 2 cut(s) 196, 346
HincII GTYRAC 1 cut(s) 288
HindII GTYRAC 1 cut(s) 288
HinfI GANTC 1 cut(s) 100
HpaII CCGG 1 cut(s) 478
HphI GGTGA 3 cut(s) 178, 389, 515
Hpy166II GTNNAC 1 cut(s) 288
Hpy188I TCNGA 6 cut(s) 44, 109, 158, 205, 630, 687
Hpy188III TCNNGA 3 cut(s) 273, 407, 656
Hpy8I GTNNAC 1 cut(s) 288
Hpy99I CGWCG 1 cut(s) 279
HpyAV CCTTC 4 cut(s) 23, 139, 166, 208
HpyCH4V TGCA 6 cut(s) 168, 340, 390, 426, 555, 606
HpyF10VI GCNNNNNNNGC 2 cut(s) 552, 603
HpyF3I CTNAG 1 cut(s) 41
Hsp92II CATG 2 cut(s) 155, 610
HspAI GCGC 2 cut(s) 196, 346
Kzo9I GATC 4 cut(s) 37, 181, 200, 278
LmnI GCTCC 2 cut(s) 15, 631
LpnPI CCDG 8 cut(s) 53, 71, 80, 350, 491, 568, 618, 641
MaeI CTAG 1 cut(s) 233
MaeIII GTNAC 3 cut(s) 26, 452, 590
MalI GATC 4 cut(s) 39, 183, 202, 280
MboI GATC 4 cut(s) 37, 181, 200, 278
MboII GAAGA 7 cut(s) 47, 117, 329, 392, 395, 518, 622
MflI RGATCY 1 cut(s) 37
MhlI GDGCHC 1 cut(s) 548
MluCI AATT 1 cut(s) 79
MlyI GAGTC 1 cut(s) 94
MmeI TCCRAC 2 cut(s) 132, 653
MnlI CCTC 5 cut(s) 122, 199, 326, 508, 553
MspI CCGG 1 cut(s) 478
MspR9I CCNGG 2 cut(s) 68, 479
MvaI CCWGG 1 cut(s) 68
MwoI GCNNNNNNNGC 2 cut(s) 552, 603
NciI CCSGG 1 cut(s) 479
NdeII GATC 4 cut(s) 37, 181, 200, 278
NlaIII CATG 2 cut(s) 155, 610
NlaIV GGNNCC 2 cut(s) 11, 627
NmuCI GTSAC 2 cut(s) 26, 452
NspV TTCGAA 1 cut(s) 16
PceI AGGCCT 1 cut(s) 336
Ple19I CGATCG 1 cut(s) 203
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
Psp6I CCWGG 1 cut(s) 66
PspFI CCCAGC 1 cut(s) 85
PspGI CCWGG 1 cut(s) 66
PspN4I GGNNCC 2 cut(s) 11, 627
PspPI GGNCC 3 cut(s) 148, 205, 415
PsuI RGATCY 1 cut(s) 37
PvuI CGATCG 1 cut(s) 203
RsaI GTAC 1 cut(s) 403
RsaNI GTAC 1 cut(s) 402
Rsr2I CGGWCCG 1 cut(s) 205
RsrII CGGWCCG 1 cut(s) 205
Sau3AI GATC 4 cut(s) 37, 181, 200, 278
Sau96I GGNCC 3 cut(s) 148, 205, 415
SchI GAGTC 1 cut(s) 94
ScrFI CCNGG 2 cut(s) 68, 479
SduI GDGCHC 1 cut(s) 548
SfuI TTCGAA 1 cut(s) 16
SinI GGWCC 2 cut(s) 205, 415
SmlI CTYRAG 1 cut(s) 488
SmoI CTYRAG 1 cut(s) 488
Sse9I AATT 1 cut(s) 79
SseBI AGGCCT 1 cut(s) 336
SspMI CTAG 1 cut(s) 233
StuI AGGCCT 1 cut(s) 336
StyD4I CCNGG 2 cut(s) 66, 477
TaqI TCGA 2 cut(s) 16, 274
TaqII GACCGA 1 cut(s) 222
TasI AATT 1 cut(s) 79
TscAI CASTG 2 cut(s) 170, 681
TseFI GTSAC 2 cut(s) 26, 452
Tsp45I GTSAC 2 cut(s) 26, 452
TspDTI ATGAA 6 cut(s) 48, 83, 117, 258, 623, 711
TspRI CASTG 2 cut(s) 170, 681
VpaK11BI GGWCC 2 cut(s) 205, 415
XapI RAATTY 1 cut(s) 79
XcmI CCANNNNNNNNNTGG 1 cut(s) 425
XspI CTAG 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.