RLG00000005476

Cell division cycle-associated protein 7-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0016343
Physical Location & Seq
Reverse (-)
67947371 .. 67949210
1840 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005476

Sequence Viewer

Length: 831 bp
ATGGGAAGGCTCCTCCGAACCAAGAGTGACTATGAAGATCTCAGAAATGCTCGCATATTACAAAACCAGGCTCGTTTGAATTCGCTGGGAGTTCATAAGACTCTCTCCGACCTCCACTCCATTTCTTCATCAGCAAAACCACCAAAGGCCCATGCCAGAAAGCACTGCAAGAAGGTCTATGATCTCACCTCTTTGCGCCGATCGGACCGATTGAAGGGAACAGCTACCACTCTAGCAACAACAACAACAACAACCCCAAATAATACTTCATCTCGACGATCAAGGTTGACAGACGTGGGTGGAAGTGGAGAGAGTGAGAAGGGGAATAAGAGGAGGCCTGCAAATGCGCCTTTTGTGGAAGTAAAGGGTTCGGAGATGCAGCTAGTTTCGTCTGAGTCTTGGGCTCGGCGTTGTGATAGCAAGAGCCGCGGCAGTGTCTATCATTCTGTTTTCGGGATTTGCTGCCATTTTTGCAGGCAAAAGAAGTTGTGTGGTGAAGAAGATTGCAAGCGATGCGGTACTCTTGATATGGACCAACCTTGCATTGGAAAAACAGATTGTTCAGTTTGTCACTCTACAAATGGTGTTCTTTGCCGGGGTTGTCTCAAGGTTAGGTATGGTGAAGAAATGGAGGAAGTGAGAGAAAACAAAGATTGGATGTGCCCACATTGCATAGAAGAAAAAGGAGTAAGGCCTTACTGGATATGTAACAGCTCATTCTGCATGAAGAAGCGAAAGATGGCTCCGACTGGGATAGCAATATATAGATGTCAGGAGATGGGATACAAGTCAGTGGCACATCTGCTAATGGATGAACTTCAACGAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-4CXXC_R1

Protein Analysis

277

Amino Acids

31.17

Weight (kDa)

9.39

Isoelectric Point (pI)

53.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-4CXXC_R1 PF10497 148 - 269 3.4e-26 Zinc-finger domain of monoamine-oxidase A repressor R1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016343)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17610 FvH4_5g17610 FvH4_5g17610
prunus_persica Prupe.5G235800_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0178051
rosa_laevigata RLG00000005476
rosa_multiflora Rmu_sc0000425.1_g000005
rosa_roxburghii Rroxscaffold_3G00275220
rosa_rugosa Rorug06G0413000 Rorug06G0413100
rosa_samantha Rh7AG012300 Rh7BG012200 Rh7CG012200 Rh7DG012500
rosa_wichuraiana Rw7G000970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 429
AciI CCGC 3 cut(s) 427, 429, 516
AcsI RAATTY 1 cut(s) 79
AfaI GTAC 1 cut(s) 520
AfiI CCNNNNNNNGG 2 cut(s) 214, 545
AgsI TTSAA 3 cut(s) 79, 214, 821
AjiI CACGTC 1 cut(s) 295
AjnI CCWGG 1 cut(s) 66
AjuI GAANNNNNNNTTGG 2 cut(s) 250, 282
AluBI AGCT 3 cut(s) 224, 382, 714
AluI AGCT 3 cut(s) 224, 382, 714
Alw26I GTCTC 1 cut(s) 608
AoxI GGCC 3 cut(s) 147, 335, 692
ApeKI GCWGC 2 cut(s) 379, 462
ApoI RAATTY 1 cut(s) 79
AspLEI GCGC 2 cut(s) 198, 349
AspS9I GGNCC 3 cut(s) 148, 205, 532
AsuC2I CCSGG 1 cut(s) 596
AsuHPI GGTGA 3 cut(s) 178, 506, 632
AvaII GGWCC 2 cut(s) 205, 532
BaeGI GKGCMC 1 cut(s) 665
BanII GRGCYC 1 cut(s) 406
BbvI GCAGC 2 cut(s) 391, 449
BccI CCATC 2 cut(s) 733, 772
BciT130I CCWGG 1 cut(s) 68
BciVI GTATCC 1 cut(s) 776
BcnI CCSGG 1 cut(s) 596
BcoDI GTCTC 1 cut(s) 608
BfaI CTAG 2 cut(s) 233, 383
BfuI GTATCC 1 cut(s) 776
BglII AGATCT 1 cut(s) 37
BisI GCNGC 4 cut(s) 380, 427, 430, 463
BlsI GCNGC 4 cut(s) 381, 428, 431, 464
Bme1390I CCNGG 2 cut(s) 68, 596
Bme18I GGWCC 2 cut(s) 205, 532
BmgBI CACGTC 1 cut(s) 295
BmgT120I GGNCC 3 cut(s) 148, 205, 532
BmiI GGNNCC 2 cut(s) 11, 744
BmrFI CCNGG 2 cut(s) 68, 596
BmrI ACTGGG 1 cut(s) 759
BmsI GCATC 2 cut(s) 366, 503
BmuI ACTGGG 1 cut(s) 759
BpuEI CTTGAG 1 cut(s) 590
BpuMI CCSGG 1 cut(s) 596
BsaJI CCNNGG 2 cut(s) 427, 595
BsaXI ACNNNNNCTCC 2 cut(s) 101, 131
Bsc4I CCNNNNNNNGG 2 cut(s) 214, 545
Bse1I ACTGG 2 cut(s) 704, 754
Bse3DI GCAATG 1 cut(s) 667
BseBI CCWGG 1 cut(s) 68
BseDI CCNNGG 2 cut(s) 427, 595
BseGI GGATG 2 cut(s) 663, 817
BseLI CCNNNNNNNGG 2 cut(s) 214, 545
BseMI GCAATG 1 cut(s) 667
BseMII CTCAG 2 cut(s) 55, 384
BseNI ACTGG 2 cut(s) 704, 754
BseRI GAGGAG 1 cut(s) 346
BseSI GKGCMC 1 cut(s) 665
BseXI GCAGC 2 cut(s) 391, 449
BseYI CCCAGC 1 cut(s) 85
Bsh1236I CGCG 1 cut(s) 429
Bsh1285I CGRYCG 1 cut(s) 203
BshFI GGCC 3 cut(s) 149, 337, 694
BsiEI CGRYCG 1 cut(s) 203
BsiSI CCGG 1 cut(s) 595
BslI CCNNNNNNNGG 2 cut(s) 214, 545
BsmAI GTCTC 1 cut(s) 608
BsnI GGCC 3 cut(s) 149, 337, 694
Bsp1286I GDGCHC 2 cut(s) 406, 665
Bsp143I GATC 4 cut(s) 37, 181, 200, 278
BspACI CCGC 3 cut(s) 427, 429, 516
BspANI GGCC 3 cut(s) 149, 337, 694
BspCNI CTCAG 2 cut(s) 54, 385
BspFNI CGCG 1 cut(s) 429
BspLI GGNNCC 2 cut(s) 11, 744
BsrDI GCAATG 1 cut(s) 667
BsrI ACTGG 2 cut(s) 704, 754
BssECI CCNNGG 2 cut(s) 427, 595
BssMI GATC 4 cut(s) 37, 181, 200, 278
Bst2UI CCWGG 1 cut(s) 68
BstAPI GCANNNNNTGC 1 cut(s) 513
BstC8I GCNNGC 4 cut(s) 52, 339, 476, 509
BstDEI CTNAG 2 cut(s) 41, 393
BstDSI CCRYGG 1 cut(s) 427
BstF5I GGATG 2 cut(s) 663, 817
BstFNI CGCG 1 cut(s) 429
BstHHI GCGC 2 cut(s) 198, 349
BstKTI GATC 4 cut(s) 40, 184, 203, 281
BstMAI GTCTC 1 cut(s) 608
BstMBI GATC 4 cut(s) 37, 181, 200, 278
BstMCI CGRYCG 1 cut(s) 203
BstMWI GCNNNNNNNGC 5 cut(s) 426, 471, 513, 669, 720
BstNI CCWGG 1 cut(s) 68
BstSCI CCNGG 2 cut(s) 66, 594
BstSLI GKGCMC 1 cut(s) 665
BstUI CGCG 1 cut(s) 429
BstV1I GCAGC 2 cut(s) 391, 449
BstX2I RGATCY 1 cut(s) 37
BstYI RGATCY 1 cut(s) 37
BsuI GTATCC 1 cut(s) 776
BsuRI GGCC 3 cut(s) 149, 337, 694
BtgI CCRYGG 1 cut(s) 427
BtgZI GCGATG 1 cut(s) 526
BtrI CACGTC 1 cut(s) 295
BtsCI GGATG 2 cut(s) 663, 817
BtsI GCAGTG 2 cut(s) 163, 439
BtsIMutI CAGTG 3 cut(s) 163, 439, 798
Cac8I GCNNGC 4 cut(s) 52, 339, 476, 509
CfoI GCGC 2 cut(s) 198, 349
Cfr13I GGNCC 3 cut(s) 148, 205, 532
Cfr42I CCGCGG 1 cut(s) 430
CpoI CGGWCCG 1 cut(s) 205
Csp6I GTAC 1 cut(s) 519
CspI CGGWCCG 1 cut(s) 205
CviAII CATG 2 cut(s) 152, 724
CviQI GTAC 1 cut(s) 519
DdeI CTNAG 2 cut(s) 41, 393
DpnI GATC 4 cut(s) 39, 183, 202, 280
DpnII GATC 4 cut(s) 37, 181, 200, 278
Eco147I AGGCCT 2 cut(s) 337, 694
Eco24I GRGCYC 1 cut(s) 406
Eco47I GGWCC 2 cut(s) 205, 532
EcoRI GAATTC 1 cut(s) 79
EcoRII CCWGG 1 cut(s) 66
EcoT38I GRGCYC 1 cut(s) 406
FaeI CATG 2 cut(s) 155, 727
FatI CATG 2 cut(s) 151, 723
Fnu4HI GCNGC 4 cut(s) 380, 427, 430, 463
FokI GGATG 2 cut(s) 670, 824
FriOI GRGCYC 1 cut(s) 406
Fsp4HI GCNGC 4 cut(s) 380, 427, 430, 463
FspBI CTAG 2 cut(s) 233, 383
GlaI GCGC 2 cut(s) 197, 348
GluI GCNGC 4 cut(s) 380, 427, 430, 463
GsaI CCCAGC 1 cut(s) 89
HaeIII GGCC 3 cut(s) 149, 337, 694
HapII CCGG 1 cut(s) 595
HhaI GCGC 2 cut(s) 198, 349
Hin1II CATG 2 cut(s) 155, 727
Hin6I GCGC 2 cut(s) 196, 347
HinP1I GCGC 2 cut(s) 196, 347
HincII GTYRAC 1 cut(s) 288
HindII GTYRAC 1 cut(s) 288
HinfI GANTC 2 cut(s) 100, 395
HpaII CCGG 1 cut(s) 595
HphI GGTGA 3 cut(s) 178, 506, 632
Hpy166II GTNNAC 1 cut(s) 288
Hpy188I TCNGA 7 cut(s) 17, 44, 109, 205, 373, 394, 747
Hpy188III TCNNGA 4 cut(s) 273, 454, 524, 773
Hpy8I GTNNAC 1 cut(s) 288
Hpy99I CGWCG 1 cut(s) 279
HpyAV CCTTC 3 cut(s) 166, 208, 313
HpyCH4IV ACGT 1 cut(s) 294
HpyCH4V TGCA 8 cut(s) 168, 341, 379, 474, 507, 543, 672, 723
HpyF10VI GCNNNNNNNGC 5 cut(s) 426, 471, 513, 669, 720
HpyF3I CTNAG 2 cut(s) 41, 393
HpySE526I ACGT 1 cut(s) 294
Hsp92II CATG 2 cut(s) 155, 727
HspAI GCGC 2 cut(s) 196, 347
KspI CCGCGG 1 cut(s) 430
Kzo9I GATC 4 cut(s) 37, 181, 200, 278
LmnI GCTCC 2 cut(s) 15, 748
Lsp1109I GCAGC 2 cut(s) 391, 449
LweI GCATC 2 cut(s) 366, 503
MaeI CTAG 2 cut(s) 233, 383
MaeII ACGT 1 cut(s) 294
MaeIII GTNAC 3 cut(s) 26, 569, 707
MalI GATC 4 cut(s) 39, 183, 202, 280
MboI GATC 4 cut(s) 37, 181, 200, 278
MboII GAAGA 7 cut(s) 47, 117, 509, 512, 635, 689, 739
MflI RGATCY 1 cut(s) 37
MhlI GDGCHC 2 cut(s) 406, 665
MluCI AATT 1 cut(s) 79
MlyI GAGTC 2 cut(s) 94, 404
MmeI TCCRAC 2 cut(s) 132, 770
MnlI CCTC 6 cut(s) 23, 122, 199, 324, 327, 625
MspA1I CMGCKG 1 cut(s) 429
MspI CCGG 1 cut(s) 595
MspR9I CCNGG 2 cut(s) 68, 596
MvaI CCWGG 1 cut(s) 68
MvnI CGCG 1 cut(s) 429
MwoI GCNNNNNNNGC 5 cut(s) 426, 471, 513, 669, 720
NciI CCSGG 1 cut(s) 596
NdeII GATC 4 cut(s) 37, 181, 200, 278
NlaIII CATG 2 cut(s) 155, 727
NlaIV GGNNCC 2 cut(s) 11, 744
NmeAIII GCCGAG 1 cut(s) 385
NmuCI GTSAC 2 cut(s) 26, 569
PceI AGGCCT 2 cut(s) 337, 694
PkrI GCNGC 4 cut(s) 381, 428, 431, 464
Ple19I CGATCG 1 cut(s) 203
PleI GAGTC 2 cut(s) 94, 403
PpsI GAGTC 2 cut(s) 94, 403
Psp6I CCWGG 1 cut(s) 66
PspFI CCCAGC 1 cut(s) 85
PspGI CCWGG 1 cut(s) 66
PspN4I GGNNCC 2 cut(s) 11, 744
PspPI GGNCC 3 cut(s) 148, 205, 532
PsuI RGATCY 1 cut(s) 37
PvuI CGATCG 1 cut(s) 203
RsaI GTAC 1 cut(s) 520
RsaNI GTAC 1 cut(s) 519
Rsr2I CGGWCCG 1 cut(s) 205
RsrII CGGWCCG 1 cut(s) 205
SacII CCGCGG 1 cut(s) 430
SatI GCNGC 4 cut(s) 380, 427, 430, 463
Sau3AI GATC 4 cut(s) 37, 181, 200, 278
Sau96I GGNCC 3 cut(s) 148, 205, 532
SchI GAGTC 2 cut(s) 94, 404
ScrFI CCNGG 2 cut(s) 68, 596
SduI GDGCHC 2 cut(s) 406, 665
SfaNI GCATC 2 cut(s) 366, 503
Sfr303I CCGCGG 1 cut(s) 430
SgrBI CCGCGG 1 cut(s) 430
SinI GGWCC 2 cut(s) 205, 532
SmlI CTYRAG 1 cut(s) 605
SmoI CTYRAG 1 cut(s) 605
Sse9I AATT 1 cut(s) 79
SseBI AGGCCT 2 cut(s) 337, 694
SsiI CCGC 3 cut(s) 427, 429, 516
SspMI CTAG 2 cut(s) 233, 383
StuI AGGCCT 2 cut(s) 337, 694
StyD4I CCNGG 2 cut(s) 66, 594
TaiI ACGT 1 cut(s) 297
TaqI TCGA 1 cut(s) 274
TaqII GACCGA 1 cut(s) 222
TasI AATT 1 cut(s) 79
TauI GCSGC 2 cut(s) 429, 432
TscAI CASTG 3 cut(s) 170, 439, 798
TseFI GTSAC 2 cut(s) 26, 569
TseI GCWGC 2 cut(s) 379, 462
Tsp45I GTSAC 2 cut(s) 26, 569
TspDTI ATGAA 6 cut(s) 48, 83, 117, 258, 740, 828
TspRI CASTG 3 cut(s) 170, 439, 798
VpaK11BI GGWCC 2 cut(s) 205, 532
XapI RAATTY 1 cut(s) 79
XcmI CCANNNNNNNNNTGG 1 cut(s) 542
XspI CTAG 2 cut(s) 233, 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.