Rh7DG012500

Cell division cycle-associated protein 7-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0016343
Physical Location & Seq
Forward (+)
1067307 .. 1069233
1927 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG012500.1

Sequence Viewer

Length: 915 bp
ATGCCTTCAAGACCGTTGAACTCTGCCGGAGGAAAAGTAACTCCCTGTCACACTGTGTTACCATCCGAGTGGAAGCAGAAAACAACAATGGGAAGGCTCCTCCGAACCAAGAGTGACTATGAAGATCTCAGAAATGCTCGCATATTACAAAACCAGGCTCGTTTGAATTCGCTGGGAGTTCATAAGACTCTCTCCGACCTCCACTCCATTTCTTCATCAGCAAAACCACCAAAGGCCCATGTCAGAAAGTACTGCAAGAAGGTCTATGATCTCACCTCTTTGCGCCGATCGGACCGATTGAAGGGAACAGCTACCACTCTAGCAACAACAACAACAACCCCAAATAATACTTCATCTCGACGATCAAGGTTGACAGAAGTGGGTGGAAGTGGAGAGAGTGAGGAGGGGAATAAGAGGAGGCCTGCAAATGCGCCTTTTGTGGAAGTAAAGGGTTCGGAGATGCAGCTTGTTTCGTCTGAGTCTTGGGCTCGGCGTTGTGATAGCAAGAGCCGCGGCAGTGTCTATCATTCTGTTTTCGGGATTTGCTGCCATTTTTGCAGGCAAAAGAAGTTGTGTGGTGAAGAAGATTGCAAGCGATGTGGTACTCTTGATATGGACCAACCTTGCATTGGAAAAACAGATTGTTCAGTTTGTCACTCTACCAATGGTGTTCTTTGCCGGGGTTGTCTCAAGGTTAGGTATGGTGAAGAAATGGAGGAAGTGAGAGAAAACAAAGATTGGATGTGCCCACATTGCATAGAAGAAAAAGGAGTAAGACCTTACTGGATATGTAACAGCTCATTCTGCATGAAGAAGCGAAAGATGGCTCCGACTGGGATAGCAATATACAGATGTCAGGAGATGGGATACAAGTCAGTGGCACATCTGCTAATGGATGAACTTCAACGAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-4CXXC_R1

Protein Analysis

304

Amino Acids

34.27

Weight (kDa)

9.38

Isoelectric Point (pI)

57.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-4CXXC_R1 PF10497 176 - 297 5.2e-26 Zinc-finger domain of monoamine-oxidase A repressor R1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016343)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17610 FvH4_5g17610 FvH4_5g17610
prunus_persica Prupe.5G235800_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0178051
rosa_laevigata RLG00000005476
rosa_multiflora Rmu_sc0000425.1_g000005
rosa_roxburghii Rroxscaffold_3G00275220
rosa_rugosa Rorug06G0413000 Rorug06G0413100
rosa_samantha Rh7AG012300 Rh7BG012200 Rh7CG012200 Rh7DG012500
rosa_wichuraiana Rw7G000970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 513
AciI CCGC 2 cut(s) 511, 513
AcsI RAATTY 1 cut(s) 166
AdeI CACNNNGTG 1 cut(s) 55
AfaI GTAC 2 cut(s) 251, 604
AfiI CCNNNNNNNGG 2 cut(s) 301, 629
AgsI TTSAA 5 cut(s) 9, 19, 166, 301, 905
AjnI CCWGG 1 cut(s) 153
AjuI GAANNNNNNNTTGG 2 cut(s) 334, 366
AluBI AGCT 3 cut(s) 311, 466, 798
AluI AGCT 3 cut(s) 311, 466, 798
Alw26I GTCTC 1 cut(s) 692
AoxI GGCC 2 cut(s) 234, 419
ApeKI GCWGC 2 cut(s) 463, 546
ApoI RAATTY 1 cut(s) 166
AspLEI GCGC 2 cut(s) 285, 433
AspS9I GGNCC 3 cut(s) 235, 292, 616
AsuC2I CCSGG 1 cut(s) 680
AsuHPI GGTGA 3 cut(s) 265, 590, 716
AvaII GGWCC 2 cut(s) 292, 616
BaeGI GKGCMC 1 cut(s) 749
BanII GRGCYC 1 cut(s) 490
BbvI GCAGC 2 cut(s) 475, 533
BccI CCATC 3 cut(s) 70, 817, 856
BciT130I CCWGG 1 cut(s) 155
BciVI GTATCC 1 cut(s) 860
BcnI CCSGG 1 cut(s) 680
BcoDI GTCTC 1 cut(s) 692
BfaI CTAG 1 cut(s) 320
BfuI GTATCC 1 cut(s) 860
BglII AGATCT 1 cut(s) 124
BisI GCNGC 4 cut(s) 464, 511, 514, 547
BlsI GCNGC 4 cut(s) 465, 512, 515, 548
BmcAI AGTACT 1 cut(s) 251
Bme1390I CCNGG 2 cut(s) 155, 680
Bme18I GGWCC 2 cut(s) 292, 616
BmgT120I GGNCC 3 cut(s) 235, 292, 616
BmiI GGNNCC 2 cut(s) 98, 828
BmrFI CCNGG 2 cut(s) 155, 680
BmrI ACTGGG 1 cut(s) 843
BmsI GCATC 1 cut(s) 450
BmuI ACTGGG 1 cut(s) 843
BpuEI CTTGAG 1 cut(s) 674
BpuMI CCSGG 1 cut(s) 680
BsaJI CCNNGG 2 cut(s) 511, 679
BsaXI ACNNNNNCTCC 4 cut(s) 21, 51, 188, 218
Bsc4I CCNNNNNNNGG 2 cut(s) 301, 629
Bse1I ACTGG 2 cut(s) 788, 838
Bse3DI GCAATG 1 cut(s) 751
BseBI CCWGG 1 cut(s) 155
BseDI CCNNGG 2 cut(s) 511, 679
BseGI GGATG 3 cut(s) 62, 747, 901
BseLI CCNNNNNNNGG 2 cut(s) 301, 629
BseMI GCAATG 1 cut(s) 751
BseMII CTCAG 2 cut(s) 142, 468
BseNI ACTGG 2 cut(s) 788, 838
BseRI GAGGAG 3 cut(s) 89, 416, 430
BseSI GKGCMC 1 cut(s) 749
BseXI GCAGC 2 cut(s) 475, 533
BseYI CCCAGC 1 cut(s) 172
Bsh1236I CGCG 1 cut(s) 513
Bsh1285I CGRYCG 1 cut(s) 290
BshFI GGCC 2 cut(s) 236, 421
BsiEI CGRYCG 1 cut(s) 290
BsiSI CCGG 2 cut(s) 27, 679
BslI CCNNNNNNNGG 2 cut(s) 301, 629
BsmAI GTCTC 1 cut(s) 692
BsnI GGCC 2 cut(s) 236, 421
Bsp1286I GDGCHC 2 cut(s) 490, 749
Bsp143I GATC 4 cut(s) 124, 268, 287, 362
BspACI CCGC 2 cut(s) 511, 513
BspANI GGCC 2 cut(s) 236, 421
BspCNI CTCAG 2 cut(s) 141, 469
BspFNI CGCG 1 cut(s) 513
BspLI GGNNCC 2 cut(s) 98, 828
BsrDI GCAATG 1 cut(s) 751
BsrI ACTGG 2 cut(s) 788, 838
BssECI CCNNGG 2 cut(s) 511, 679
BssMI GATC 4 cut(s) 124, 268, 287, 362
Bst2UI CCWGG 1 cut(s) 155
Bst4CI ACNGT 2 cut(s) 15, 55
BstC8I GCNNGC 4 cut(s) 139, 423, 560, 593
BstDEI CTNAG 2 cut(s) 128, 477
BstDSI CCRYGG 1 cut(s) 511
BstF5I GGATG 3 cut(s) 62, 747, 901
BstFNI CGCG 1 cut(s) 513
BstHHI GCGC 2 cut(s) 285, 433
BstKTI GATC 4 cut(s) 127, 271, 290, 365
BstMAI GTCTC 1 cut(s) 692
BstMBI GATC 4 cut(s) 124, 268, 287, 362
BstMCI CGRYCG 1 cut(s) 290
BstMWI GCNNNNNNNGC 4 cut(s) 510, 555, 753, 804
BstNI CCWGG 1 cut(s) 155
BstSCI CCNGG 2 cut(s) 153, 678
BstSLI GKGCMC 1 cut(s) 749
BstUI CGCG 1 cut(s) 513
BstV1I GCAGC 2 cut(s) 475, 533
BstX2I RGATCY 1 cut(s) 124
BstXI CCANNNNNNTGG 1 cut(s) 69
BstYI RGATCY 1 cut(s) 124
BsuI GTATCC 1 cut(s) 860
BsuRI GGCC 2 cut(s) 236, 421
BtgI CCRYGG 1 cut(s) 511
BtgZI GCGATG 1 cut(s) 610
BtsCI GGATG 3 cut(s) 62, 747, 901
BtsI GCAGTG 1 cut(s) 523
BtsIMutI CAGTG 3 cut(s) 51, 523, 882
Cac8I GCNNGC 4 cut(s) 139, 423, 560, 593
CfoI GCGC 2 cut(s) 285, 433
Cfr13I GGNCC 3 cut(s) 235, 292, 616
Cfr42I CCGCGG 1 cut(s) 514
CpoI CGGWCCG 1 cut(s) 292
Csp6I GTAC 2 cut(s) 250, 603
CspCI CAANNNNNGTGG 2 cut(s) 580, 615
CspI CGGWCCG 1 cut(s) 292
CviAII CATG 2 cut(s) 239, 808
CviQI GTAC 2 cut(s) 250, 603
DdeI CTNAG 2 cut(s) 128, 477
DpnI GATC 4 cut(s) 126, 270, 289, 364
DpnII GATC 4 cut(s) 124, 268, 287, 362
DraIII CACNNNGTG 1 cut(s) 55
Eco147I AGGCCT 1 cut(s) 421
Eco24I GRGCYC 1 cut(s) 490
Eco47I GGWCC 2 cut(s) 292, 616
EcoRI GAATTC 1 cut(s) 166
EcoRII CCWGG 1 cut(s) 153
EcoT38I GRGCYC 1 cut(s) 490
FaeI CATG 2 cut(s) 242, 811
FatI CATG 2 cut(s) 238, 807
Fnu4HI GCNGC 4 cut(s) 464, 511, 514, 547
FokI GGATG 3 cut(s) 49, 754, 908
FriOI GRGCYC 1 cut(s) 490
Fsp4HI GCNGC 4 cut(s) 464, 511, 514, 547
FspBI CTAG 1 cut(s) 320
GlaI GCGC 2 cut(s) 284, 432
GluI GCNGC 4 cut(s) 464, 511, 514, 547
GsaI CCCAGC 1 cut(s) 176
HaeIII GGCC 2 cut(s) 236, 421
HapII CCGG 2 cut(s) 27, 679
HhaI GCGC 2 cut(s) 285, 433
Hin1II CATG 2 cut(s) 242, 811
Hin6I GCGC 2 cut(s) 283, 431
HinP1I GCGC 2 cut(s) 283, 431
HincII GTYRAC 1 cut(s) 372
HindII GTYRAC 1 cut(s) 372
HinfI GANTC 2 cut(s) 187, 479
HpaII CCGG 2 cut(s) 27, 679
HphI GGTGA 3 cut(s) 265, 590, 716
Hpy166II GTNNAC 1 cut(s) 372
Hpy188I TCNGA 9 cut(s) 67, 104, 131, 196, 245, 292, 457, 478, 831
Hpy188III TCNNGA 5 cut(s) 9, 357, 538, 608, 857
Hpy8I GTNNAC 1 cut(s) 372
Hpy99I CGWCG 1 cut(s) 363
HpyAV CCTTC 4 cut(s) 15, 87, 253, 295
HpyCH4III ACNGT 2 cut(s) 15, 55
HpyCH4V TGCA 8 cut(s) 255, 425, 463, 558, 591, 627, 756, 807
HpyF10VI GCNNNNNNNGC 4 cut(s) 510, 555, 753, 804
HpyF3I CTNAG 2 cut(s) 128, 477
Hsp92II CATG 2 cut(s) 242, 811
HspAI GCGC 2 cut(s) 283, 431
KspI CCGCGG 1 cut(s) 514
Kzo9I GATC 4 cut(s) 124, 268, 287, 362
LmnI GCTCC 2 cut(s) 102, 832
Lsp1109I GCAGC 2 cut(s) 475, 533
LweI GCATC 1 cut(s) 450
MaeI CTAG 1 cut(s) 320
MaeIII GTNAC 6 cut(s) 37, 47, 57, 113, 653, 791
MalI GATC 4 cut(s) 126, 270, 289, 364
MboI GATC 4 cut(s) 124, 268, 287, 362
MboII GAAGA 7 cut(s) 134, 204, 593, 596, 719, 773, 823
MflI RGATCY 1 cut(s) 124
MhlI GDGCHC 2 cut(s) 490, 749
MluCI AATT 1 cut(s) 166
MlyI GAGTC 2 cut(s) 181, 488
MmeI TCCRAC 2 cut(s) 219, 854
MnlI CCTC 9 cut(s) 23, 110, 209, 286, 394, 397, 408, 411, 709
MslI CAYNNNNRTG 1 cut(s) 67
MspA1I CMGCKG 1 cut(s) 513
MspI CCGG 2 cut(s) 27, 679
MspR9I CCNGG 2 cut(s) 155, 680
MvaI CCWGG 1 cut(s) 155
MvnI CGCG 1 cut(s) 513
MwoI GCNNNNNNNGC 4 cut(s) 510, 555, 753, 804
NciI CCSGG 1 cut(s) 680
NdeII GATC 4 cut(s) 124, 268, 287, 362
NlaIII CATG 2 cut(s) 242, 811
NlaIV GGNNCC 2 cut(s) 98, 828
NmeAIII GCCGAG 1 cut(s) 469
NmuCI GTSAC 3 cut(s) 47, 113, 653
PceI AGGCCT 1 cut(s) 421
PkrI GCNGC 4 cut(s) 465, 512, 515, 548
Ple19I CGATCG 1 cut(s) 290
PleI GAGTC 2 cut(s) 181, 487
PpsI GAGTC 2 cut(s) 181, 487
Psp6I CCWGG 1 cut(s) 153
PspFI CCCAGC 1 cut(s) 172
PspGI CCWGG 1 cut(s) 153
PspN4I GGNNCC 2 cut(s) 98, 828
PspPI GGNCC 3 cut(s) 235, 292, 616
PsuI RGATCY 1 cut(s) 124
PvuI CGATCG 1 cut(s) 290
RsaI GTAC 2 cut(s) 251, 604
RsaNI GTAC 2 cut(s) 250, 603
RseI CAYNNNNRTG 1 cut(s) 67
Rsr2I CGGWCCG 1 cut(s) 292
RsrII CGGWCCG 1 cut(s) 292
SacII CCGCGG 1 cut(s) 514
SatI GCNGC 4 cut(s) 464, 511, 514, 547
Sau3AI GATC 4 cut(s) 124, 268, 287, 362
Sau96I GGNCC 3 cut(s) 235, 292, 616
ScaI AGTACT 1 cut(s) 251
SchI GAGTC 2 cut(s) 181, 488
ScrFI CCNGG 2 cut(s) 155, 680
SduI GDGCHC 2 cut(s) 490, 749
SfaNI GCATC 1 cut(s) 450
Sfr303I CCGCGG 1 cut(s) 514
SgrBI CCGCGG 1 cut(s) 514
SinI GGWCC 2 cut(s) 292, 616
SmiMI CAYNNNNRTG 1 cut(s) 67
SmlI CTYRAG 1 cut(s) 689
SmoI CTYRAG 1 cut(s) 689
Sse9I AATT 1 cut(s) 166
SseBI AGGCCT 1 cut(s) 421
SsiI CCGC 2 cut(s) 511, 513
SspMI CTAG 1 cut(s) 320
StuI AGGCCT 1 cut(s) 421
StyD4I CCNGG 2 cut(s) 153, 678
TaaI ACNGT 2 cut(s) 15, 55
TaqI TCGA 1 cut(s) 358
TaqII GACCGA 1 cut(s) 309
TasI AATT 1 cut(s) 166
TatI WGTACW 1 cut(s) 249
TauI GCSGC 2 cut(s) 513, 516
TscAI CASTG 3 cut(s) 58, 523, 882
TseFI GTSAC 3 cut(s) 47, 113, 653
TseI GCWGC 2 cut(s) 463, 546
Tsp45I GTSAC 3 cut(s) 47, 113, 653
TspDTI ATGAA 6 cut(s) 135, 170, 204, 342, 824, 912
TspRI CASTG 3 cut(s) 58, 523, 882
VpaK11BI GGWCC 2 cut(s) 292, 616
XapI RAATTY 1 cut(s) 166
XcmI CCANNNNNNNNNTGG 1 cut(s) 626
XspI CTAG 1 cut(s) 320
ZrmI AGTACT 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.