RchiOBHm_Chr7g0178051

Cell division cycle-associated protein 7-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0016343
Physical Location & Seq
Forward (+)
868312 .. 870574
2263 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ15866

Sequence Viewer

Length: 912 bp
ATGCCTTCAAGACCGTTGAACTCTGCAGGAGGAAAAGTAAGTCTCTGTCACACTGTGTTACCATTCGAGTGGAAGCAGAAAACAACAATGGGAAGGCTCCTCCGAACCAAGAGTGACTATGAAGATCTCAGAAATGCTCGCATATTACAAAACCAGGCTCGTTTGAATTCGCTGGGGGTTCATAAGACTCTCTCCGACCTCCACTCCATTTCTTCATCAGCAAAACCACCAAAGGCCCATGTCAGAAAGTACTGCAAGAAGGTCTATGATCTTACCTCTTTGCGCCGATCGGACCGATTGAAGGGAACAGCTACCACTCTAGCAACAACAACAACCCCAAATAATACTTCATCTCGACGATCAAGGTTGACAGAAGTGGGTGGAAGTGGAGAGAGTGCGGAGGGGAATAAGAGGAGGCCTGCAAATGCGCCTTTTGTGGAAGTAAAGGGTTCGGAGATGCAGCTAGTTTCGTCTGAGTCTTGGGCTCGGCGTTGTGATAGCAAGAGCCGCGGCAGTGTCTATCATTCTGTTTTCGGGATTTGCTGCCATTTTTGCAGGCAAAAGAAGTTGTGTGGTGAAGAAGATTGCAAGCGATGTGGTACTCTTGATATGGACCAACCTTGCATTGGAAAAACAGATTGTTCAGTTTGTCACTCTACCAATGGTGTTCTTTGCCGGGGTTGTCTCAAGGTTAGGTATGGTGAAGAAATGGAGGAAGTGAGAGAAAACAAAGATTGGATGTGCCCACATTGCATAGAAGAAAAAGGAGTAAGACCTTACTGGATATGTAACAGCTCATTCTGCATGAAGAAGCGAAAGTTGGCTCCGACTGGGATAGCAATATACAGATGTCAGGAGATGGGATACAAGTCAGTGGCACATCTGCTAATGGATGAACTTCAACGAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-4CXXC_R1

Protein Analysis

303

Amino Acids

34.15

Weight (kDa)

9.42

Isoelectric Point (pI)

53.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-4CXXC_R1 PF10497 175 - 296 4.5e-26 Zinc-finger domain of monoamine-oxidase A repressor R1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016343)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17610 FvH4_5g17610 FvH4_5g17610
prunus_persica Prupe.5G235800_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0178051
rosa_laevigata RLG00000005476
rosa_multiflora Rmu_sc0000425.1_g000005
rosa_roxburghii Rroxscaffold_3G00275220
rosa_rugosa Rorug06G0413000 Rorug06G0413100
rosa_samantha Rh7AG012300 Rh7BG012200 Rh7CG012200 Rh7DG012500
rosa_wichuraiana Rw7G000970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 510
AciI CCGC 3 cut(s) 398, 508, 510
AcsI RAATTY 1 cut(s) 166
AdeI CACNNNGTG 1 cut(s) 55
AfaI GTAC 2 cut(s) 251, 601
AfiI CCNNNNNNNGG 2 cut(s) 301, 626
AgsI TTSAA 5 cut(s) 9, 19, 166, 301, 902
AjnI CCWGG 1 cut(s) 153
AjuI GAANNNNNNNTTGG 4 cut(s) 331, 363, 803, 835
AluBI AGCT 3 cut(s) 311, 463, 795
AluI AGCT 3 cut(s) 311, 463, 795
Alw26I GTCTC 2 cut(s) 47, 689
AoxI GGCC 2 cut(s) 234, 416
ApeKI GCWGC 2 cut(s) 460, 543
ApoI RAATTY 1 cut(s) 166
AspLEI GCGC 2 cut(s) 285, 430
AspS9I GGNCC 3 cut(s) 235, 292, 613
AsuC2I CCSGG 1 cut(s) 677
AsuHPI GGTGA 2 cut(s) 587, 713
AvaII GGWCC 2 cut(s) 292, 613
BaeGI GKGCMC 1 cut(s) 746
BanII GRGCYC 1 cut(s) 487
BbvI GCAGC 2 cut(s) 472, 530
BccI CCATC 1 cut(s) 853
BciT130I CCWGG 1 cut(s) 155
BciVI GTATCC 1 cut(s) 857
BcnI CCSGG 1 cut(s) 677
BcoDI GTCTC 2 cut(s) 47, 689
BfaI CTAG 2 cut(s) 320, 464
BfmI CTRYAG 1 cut(s) 24
BfuI GTATCC 1 cut(s) 857
BglII AGATCT 1 cut(s) 124
BisI GCNGC 4 cut(s) 461, 508, 511, 544
BlsI GCNGC 4 cut(s) 462, 509, 512, 545
BmcAI AGTACT 1 cut(s) 251
Bme1390I CCNGG 2 cut(s) 155, 677
Bme18I GGWCC 2 cut(s) 292, 613
BmgT120I GGNCC 3 cut(s) 235, 292, 613
BmiI GGNNCC 2 cut(s) 98, 825
BmrFI CCNGG 2 cut(s) 155, 677
BmrI ACTGGG 1 cut(s) 840
BmsI GCATC 1 cut(s) 447
BmuI ACTGGG 1 cut(s) 840
BpuEI CTTGAG 1 cut(s) 671
BpuMI CCSGG 1 cut(s) 677
BsaJI CCNNGG 2 cut(s) 508, 676
BsaXI ACNNNNNCTCC 4 cut(s) 21, 51, 188, 218
Bsc4I CCNNNNNNNGG 2 cut(s) 301, 626
Bse1I ACTGG 2 cut(s) 785, 835
Bse3DI GCAATG 1 cut(s) 748
BseBI CCWGG 1 cut(s) 155
BseDI CCNNGG 2 cut(s) 508, 676
BseGI GGATG 2 cut(s) 744, 898
BseLI CCNNNNNNNGG 2 cut(s) 301, 626
BseMI GCAATG 1 cut(s) 748
BseMII CTCAG 2 cut(s) 142, 465
BseNI ACTGG 2 cut(s) 785, 835
BseRI GAGGAG 2 cut(s) 89, 427
BseSI GKGCMC 1 cut(s) 746
BseXI GCAGC 2 cut(s) 472, 530
BseYI CCCAGC 1 cut(s) 172
Bsh1236I CGCG 1 cut(s) 510
Bsh1285I CGRYCG 1 cut(s) 290
BshFI GGCC 2 cut(s) 236, 418
BsiEI CGRYCG 1 cut(s) 290
BsiSI CCGG 1 cut(s) 676
BslI CCNNNNNNNGG 2 cut(s) 301, 626
BsmAI GTCTC 2 cut(s) 47, 689
BsnI GGCC 2 cut(s) 236, 418
Bsp1286I GDGCHC 2 cut(s) 487, 746
Bsp143I GATC 4 cut(s) 124, 268, 287, 359
BspACI CCGC 3 cut(s) 398, 508, 510
BspANI GGCC 2 cut(s) 236, 418
BspCNI CTCAG 2 cut(s) 141, 466
BspFNI CGCG 1 cut(s) 510
BspLI GGNNCC 2 cut(s) 98, 825
BspMAI CTGCAG 1 cut(s) 28
BsrDI GCAATG 1 cut(s) 748
BsrI ACTGG 2 cut(s) 785, 835
BssECI CCNNGG 2 cut(s) 508, 676
BssMI GATC 4 cut(s) 124, 268, 287, 359
Bst2UI CCWGG 1 cut(s) 155
Bst4CI ACNGT 2 cut(s) 15, 55
BstC8I GCNNGC 4 cut(s) 139, 420, 557, 590
BstDEI CTNAG 2 cut(s) 128, 474
BstDSI CCRYGG 1 cut(s) 508
BstF5I GGATG 2 cut(s) 744, 898
BstFNI CGCG 1 cut(s) 510
BstHHI GCGC 2 cut(s) 285, 430
BstKTI GATC 4 cut(s) 127, 271, 290, 362
BstMAI GTCTC 2 cut(s) 47, 689
BstMBI GATC 4 cut(s) 124, 268, 287, 359
BstMCI CGRYCG 1 cut(s) 290
BstMWI GCNNNNNNNGC 4 cut(s) 507, 552, 750, 801
BstNI CCWGG 1 cut(s) 155
BstSCI CCNGG 2 cut(s) 153, 675
BstSFI CTRYAG 1 cut(s) 24
BstSLI GKGCMC 1 cut(s) 746
BstUI CGCG 1 cut(s) 510
BstV1I GCAGC 2 cut(s) 472, 530
BstX2I RGATCY 1 cut(s) 124
BstXI CCANNNNNNTGG 1 cut(s) 69
BstYI RGATCY 1 cut(s) 124
BsuI GTATCC 1 cut(s) 857
BsuRI GGCC 2 cut(s) 236, 418
BtgI CCRYGG 1 cut(s) 508
BtgZI GCGATG 1 cut(s) 607
BtsCI GGATG 2 cut(s) 744, 898
BtsI GCAGTG 1 cut(s) 520
BtsIMutI CAGTG 3 cut(s) 51, 520, 879
Cac8I GCNNGC 4 cut(s) 139, 420, 557, 590
CfoI GCGC 2 cut(s) 285, 430
Cfr13I GGNCC 3 cut(s) 235, 292, 613
Cfr42I CCGCGG 1 cut(s) 511
CpoI CGGWCCG 1 cut(s) 292
Csp6I GTAC 2 cut(s) 250, 600
CspCI CAANNNNNGTGG 2 cut(s) 577, 612
CspI CGGWCCG 1 cut(s) 292
CviAII CATG 2 cut(s) 239, 805
CviQI GTAC 2 cut(s) 250, 600
DdeI CTNAG 2 cut(s) 128, 474
DpnI GATC 4 cut(s) 126, 270, 289, 361
DpnII GATC 4 cut(s) 124, 268, 287, 359
DraIII CACNNNGTG 1 cut(s) 55
Eco147I AGGCCT 1 cut(s) 418
Eco24I GRGCYC 1 cut(s) 487
Eco47I GGWCC 2 cut(s) 292, 613
EcoRI GAATTC 1 cut(s) 166
EcoRII CCWGG 1 cut(s) 153
EcoT38I GRGCYC 1 cut(s) 487
FaeI CATG 2 cut(s) 242, 808
FatI CATG 2 cut(s) 238, 804
Fnu4HI GCNGC 4 cut(s) 461, 508, 511, 544
FokI GGATG 2 cut(s) 751, 905
FriOI GRGCYC 1 cut(s) 487
Fsp4HI GCNGC 4 cut(s) 461, 508, 511, 544
FspBI CTAG 2 cut(s) 320, 464
GlaI GCGC 2 cut(s) 284, 429
GluI GCNGC 4 cut(s) 461, 508, 511, 544
GsaI CCCAGC 1 cut(s) 176
HaeIII GGCC 2 cut(s) 236, 418
HapII CCGG 1 cut(s) 676
HhaI GCGC 2 cut(s) 285, 430
Hin1II CATG 2 cut(s) 242, 808
Hin6I GCGC 2 cut(s) 283, 428
HinP1I GCGC 2 cut(s) 283, 428
HincII GTYRAC 1 cut(s) 369
HindII GTYRAC 1 cut(s) 369
HinfI GANTC 2 cut(s) 187, 476
HpaII CCGG 1 cut(s) 676
HphI GGTGA 2 cut(s) 587, 713
Hpy166II GTNNAC 1 cut(s) 369
Hpy188I TCNGA 8 cut(s) 104, 131, 196, 245, 292, 454, 475, 828
Hpy188III TCNNGA 5 cut(s) 9, 354, 535, 605, 854
Hpy8I GTNNAC 1 cut(s) 369
Hpy99I CGWCG 1 cut(s) 360
HpyAV CCTTC 4 cut(s) 15, 87, 253, 295
HpyCH4III ACNGT 2 cut(s) 15, 55
HpyCH4V TGCA 9 cut(s) 26, 255, 422, 460, 555, 588, 624, 753, 804
HpyF10VI GCNNNNNNNGC 4 cut(s) 507, 552, 750, 801
HpyF3I CTNAG 2 cut(s) 128, 474
Hsp92II CATG 2 cut(s) 242, 808
HspAI GCGC 2 cut(s) 283, 428
KspI CCGCGG 1 cut(s) 511
Kzo9I GATC 4 cut(s) 124, 268, 287, 359
LmnI GCTCC 2 cut(s) 102, 829
Lsp1109I GCAGC 2 cut(s) 472, 530
LweI GCATC 1 cut(s) 447
MaeI CTAG 2 cut(s) 320, 464
MaeIII GTNAC 5 cut(s) 47, 57, 113, 650, 788
MalI GATC 4 cut(s) 126, 270, 289, 361
MboI GATC 4 cut(s) 124, 268, 287, 359
MboII GAAGA 7 cut(s) 134, 204, 590, 593, 716, 770, 820
MflI RGATCY 1 cut(s) 124
MhlI GDGCHC 2 cut(s) 487, 746
MluCI AATT 1 cut(s) 166
MlyI GAGTC 2 cut(s) 181, 485
MmeI TCCRAC 2 cut(s) 219, 851
MnlI CCTC 8 cut(s) 23, 110, 209, 286, 394, 405, 408, 706
MslI CAYNNNNRTG 1 cut(s) 67
MspA1I CMGCKG 1 cut(s) 510
MspI CCGG 1 cut(s) 676
MspR9I CCNGG 2 cut(s) 155, 677
MvaI CCWGG 1 cut(s) 155
MvnI CGCG 1 cut(s) 510
MwoI GCNNNNNNNGC 4 cut(s) 507, 552, 750, 801
NciI CCSGG 1 cut(s) 677
NdeII GATC 4 cut(s) 124, 268, 287, 359
NlaIII CATG 2 cut(s) 242, 808
NlaIV GGNNCC 2 cut(s) 98, 825
NmeAIII GCCGAG 1 cut(s) 466
NmuCI GTSAC 3 cut(s) 47, 113, 650
PceI AGGCCT 1 cut(s) 418
PkrI GCNGC 4 cut(s) 462, 509, 512, 545
Ple19I CGATCG 1 cut(s) 290
PleI GAGTC 2 cut(s) 181, 484
PpsI GAGTC 2 cut(s) 181, 484
Psp6I CCWGG 1 cut(s) 153
PspFI CCCAGC 1 cut(s) 172
PspGI CCWGG 1 cut(s) 153
PspN4I GGNNCC 2 cut(s) 98, 825
PspPI GGNCC 3 cut(s) 235, 292, 613
PstI CTGCAG 1 cut(s) 28
PsuI RGATCY 1 cut(s) 124
PvuI CGATCG 1 cut(s) 290
RsaI GTAC 2 cut(s) 251, 601
RsaNI GTAC 2 cut(s) 250, 600
RseI CAYNNNNRTG 1 cut(s) 67
Rsr2I CGGWCCG 1 cut(s) 292
RsrII CGGWCCG 1 cut(s) 292
SacII CCGCGG 1 cut(s) 511
SatI GCNGC 4 cut(s) 461, 508, 511, 544
Sau3AI GATC 4 cut(s) 124, 268, 287, 359
Sau96I GGNCC 3 cut(s) 235, 292, 613
ScaI AGTACT 1 cut(s) 251
SchI GAGTC 2 cut(s) 181, 485
ScrFI CCNGG 2 cut(s) 155, 677
SduI GDGCHC 2 cut(s) 487, 746
SfaNI GCATC 1 cut(s) 447
SfcI CTRYAG 1 cut(s) 24
Sfr303I CCGCGG 1 cut(s) 511
SgrBI CCGCGG 1 cut(s) 511
SinI GGWCC 2 cut(s) 292, 613
SmiMI CAYNNNNRTG 1 cut(s) 67
SmlI CTYRAG 1 cut(s) 686
SmoI CTYRAG 1 cut(s) 686
Sse9I AATT 1 cut(s) 166
SseBI AGGCCT 1 cut(s) 418
SsiI CCGC 3 cut(s) 398, 508, 510
SspMI CTAG 2 cut(s) 320, 464
StuI AGGCCT 1 cut(s) 418
StyD4I CCNGG 2 cut(s) 153, 675
TaaI ACNGT 2 cut(s) 15, 55
TaqI TCGA 2 cut(s) 66, 355
TaqII GACCGA 1 cut(s) 309
TasI AATT 1 cut(s) 166
TatI WGTACW 1 cut(s) 249
TauI GCSGC 2 cut(s) 510, 513
TscAI CASTG 3 cut(s) 58, 520, 879
TseFI GTSAC 3 cut(s) 47, 113, 650
TseI GCWGC 2 cut(s) 460, 543
Tsp45I GTSAC 3 cut(s) 47, 113, 650
TspDTI ATGAA 6 cut(s) 135, 170, 204, 339, 821, 909
TspRI CASTG 3 cut(s) 58, 520, 879
VpaK11BI GGWCC 2 cut(s) 292, 613
XapI RAATTY 1 cut(s) 166
XcmI CCANNNNNNNNNTGG 1 cut(s) 623
XspI CTAG 2 cut(s) 320, 464
ZrmI AGTACT 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.