Rh7BG012200

Cell division cycle-associated protein 7-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0016343
Physical Location & Seq
Forward (+)
795054 .. 796902
1849 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG012200.1

Sequence Viewer

Length: 825 bp
ATGGGAAGGCTCCTCCGAACCAAGAGTGACTACGAAGATCTCAGAAATGCTCGCATATTACAAAACCAGGCTCGTTTGAATTCGCTGGGAGTTCATAAGACTCTCTCCGACCTCCACTCCATTTCTTCATCAGCAAAACCACCAAAGGCCCATGTCAGAAAGCACTGCAAGAAGGTCTATGATCTCACCTCTTTGCGCCGATCGGACCGATTGAAGGGAACAGCTACCACTCTAGCAACAACAACAACCCCAAATAATACTTCATCTCGACGATCAAGGTTGACAGAAGTGGGTGGAAGTGGAGAGAGTGAGGAGGGGAATAAGAGGAGGCCTGCAAATGCGCCTTTTGTGGAAGTAAAGGGTTCGGAGATGCAGCTAGTTTCGTCTGAGTCTTGGGCTCGGCGTTGTGATAGCAAGAGCCGCGGCAGTGTCTATCATTCTGTTTTCGGGATTTGCTGCCATTTTTGCAGGCAAAAGAAGTTGTGTGGTGAAGAAGATTGCAAGCGATGTGGTACTCTTGATATGGACCAACCTTGCATTGGAAAAACAGATTGTTCAGTTTGTCACTCTACCAATGGTGTTCTTTGCCGGGGTTGTCTCAAGGTTAGGTATGGTGAAGAAATGGAGGAAGTGAGAGAAAACAAAGATTGGATGTGCCCACATTGCATAGAAGAAAAAGGAGTAAGACCTTACTGGATATGTAACAGCTCATTCTGCATGAAGAAGCGAAAGATGGCTCCGACTGGGATAGCAATATACAGATGTCAGGAGATGGGATACAAGTCAGTGGCACATCTGCTAATGGATGAACTTCAACGAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-4CXXC_R1

Protein Analysis

274

Amino Acids

31.01

Weight (kDa)

9.3

Isoelectric Point (pI)

55.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-4CXXC_R1 PF10497 146 - 267 3.3e-26 Zinc-finger domain of monoamine-oxidase A repressor R1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016343)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17610 FvH4_5g17610 FvH4_5g17610
prunus_persica Prupe.5G235800_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0178051
rosa_laevigata RLG00000005476
rosa_multiflora Rmu_sc0000425.1_g000005
rosa_roxburghii Rroxscaffold_3G00275220
rosa_rugosa Rorug06G0413000 Rorug06G0413100
rosa_samantha Rh7AG012300 Rh7BG012200 Rh7CG012200 Rh7DG012500
rosa_wichuraiana Rw7G000970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 423
AciI CCGC 2 cut(s) 421, 423
AcsI RAATTY 1 cut(s) 79
AfaI GTAC 1 cut(s) 514
AfiI CCNNNNNNNGG 2 cut(s) 214, 539
AgsI TTSAA 3 cut(s) 79, 214, 815
AjnI CCWGG 1 cut(s) 66
AjuI GAANNNNNNNTTGG 2 cut(s) 244, 276
AluBI AGCT 3 cut(s) 224, 376, 708
AluI AGCT 3 cut(s) 224, 376, 708
Alw26I GTCTC 1 cut(s) 602
AoxI GGCC 2 cut(s) 147, 329
ApeKI GCWGC 2 cut(s) 373, 456
ApoI RAATTY 1 cut(s) 79
AspLEI GCGC 2 cut(s) 198, 343
AspS9I GGNCC 3 cut(s) 148, 205, 526
AsuC2I CCSGG 1 cut(s) 590
AsuHPI GGTGA 3 cut(s) 178, 500, 626
AvaII GGWCC 2 cut(s) 205, 526
BaeGI GKGCMC 1 cut(s) 659
BanII GRGCYC 1 cut(s) 400
BbvI GCAGC 2 cut(s) 385, 443
BccI CCATC 2 cut(s) 727, 766
BciT130I CCWGG 1 cut(s) 68
BciVI GTATCC 1 cut(s) 770
BcnI CCSGG 1 cut(s) 590
BcoDI GTCTC 1 cut(s) 602
BfaI CTAG 2 cut(s) 233, 377
BfuI GTATCC 1 cut(s) 770
BglII AGATCT 1 cut(s) 37
BisI GCNGC 4 cut(s) 374, 421, 424, 457
BlsI GCNGC 4 cut(s) 375, 422, 425, 458
Bme1390I CCNGG 2 cut(s) 68, 590
Bme18I GGWCC 2 cut(s) 205, 526
BmgT120I GGNCC 3 cut(s) 148, 205, 526
BmiI GGNNCC 2 cut(s) 11, 738
BmrFI CCNGG 2 cut(s) 68, 590
BmrI ACTGGG 1 cut(s) 753
BmsI GCATC 1 cut(s) 360
BmuI ACTGGG 1 cut(s) 753
BpuEI CTTGAG 1 cut(s) 584
BpuMI CCSGG 1 cut(s) 590
BsaJI CCNNGG 2 cut(s) 421, 589
BsaXI ACNNNNNCTCC 2 cut(s) 101, 131
Bsc4I CCNNNNNNNGG 2 cut(s) 214, 539
Bse1I ACTGG 2 cut(s) 698, 748
Bse3DI GCAATG 1 cut(s) 661
BseBI CCWGG 1 cut(s) 68
BseDI CCNNGG 2 cut(s) 421, 589
BseGI GGATG 2 cut(s) 657, 811
BseLI CCNNNNNNNGG 2 cut(s) 214, 539
BseMI GCAATG 1 cut(s) 661
BseMII CTCAG 2 cut(s) 55, 378
BseNI ACTGG 2 cut(s) 698, 748
BseRI GAGGAG 2 cut(s) 326, 340
BseSI GKGCMC 1 cut(s) 659
BseXI GCAGC 2 cut(s) 385, 443
BseYI CCCAGC 1 cut(s) 85
Bsh1236I CGCG 1 cut(s) 423
Bsh1285I CGRYCG 1 cut(s) 203
BshFI GGCC 2 cut(s) 149, 331
BsiEI CGRYCG 1 cut(s) 203
BsiSI CCGG 1 cut(s) 589
BslI CCNNNNNNNGG 2 cut(s) 214, 539
BsmAI GTCTC 1 cut(s) 602
BsnI GGCC 2 cut(s) 149, 331
Bsp1286I GDGCHC 2 cut(s) 400, 659
Bsp143I GATC 4 cut(s) 37, 181, 200, 272
BspACI CCGC 2 cut(s) 421, 423
BspANI GGCC 2 cut(s) 149, 331
BspCNI CTCAG 2 cut(s) 54, 379
BspFNI CGCG 1 cut(s) 423
BspLI GGNNCC 2 cut(s) 11, 738
BsrDI GCAATG 1 cut(s) 661
BsrI ACTGG 2 cut(s) 698, 748
BssECI CCNNGG 2 cut(s) 421, 589
BssMI GATC 4 cut(s) 37, 181, 200, 272
Bst2UI CCWGG 1 cut(s) 68
BstC8I GCNNGC 4 cut(s) 52, 333, 470, 503
BstDEI CTNAG 2 cut(s) 41, 387
BstDSI CCRYGG 1 cut(s) 421
BstF5I GGATG 2 cut(s) 657, 811
BstFNI CGCG 1 cut(s) 423
BstHHI GCGC 2 cut(s) 198, 343
BstKTI GATC 4 cut(s) 40, 184, 203, 275
BstMAI GTCTC 1 cut(s) 602
BstMBI GATC 4 cut(s) 37, 181, 200, 272
BstMCI CGRYCG 1 cut(s) 203
BstMWI GCNNNNNNNGC 4 cut(s) 420, 465, 663, 714
BstNI CCWGG 1 cut(s) 68
BstSCI CCNGG 2 cut(s) 66, 588
BstSLI GKGCMC 1 cut(s) 659
BstUI CGCG 1 cut(s) 423
BstV1I GCAGC 2 cut(s) 385, 443
BstX2I RGATCY 1 cut(s) 37
BstYI RGATCY 1 cut(s) 37
BsuI GTATCC 1 cut(s) 770
BsuRI GGCC 2 cut(s) 149, 331
BtgI CCRYGG 1 cut(s) 421
BtgZI GCGATG 1 cut(s) 520
BtsCI GGATG 2 cut(s) 657, 811
BtsI GCAGTG 2 cut(s) 163, 433
BtsIMutI CAGTG 3 cut(s) 163, 433, 792
Cac8I GCNNGC 4 cut(s) 52, 333, 470, 503
CfoI GCGC 2 cut(s) 198, 343
Cfr13I GGNCC 3 cut(s) 148, 205, 526
Cfr42I CCGCGG 1 cut(s) 424
CpoI CGGWCCG 1 cut(s) 205
Csp6I GTAC 1 cut(s) 513
CspCI CAANNNNNGTGG 2 cut(s) 490, 525
CspI CGGWCCG 1 cut(s) 205
CviAII CATG 2 cut(s) 152, 718
CviQI GTAC 1 cut(s) 513
DdeI CTNAG 2 cut(s) 41, 387
DpnI GATC 4 cut(s) 39, 183, 202, 274
DpnII GATC 4 cut(s) 37, 181, 200, 272
Eco147I AGGCCT 1 cut(s) 331
Eco24I GRGCYC 1 cut(s) 400
Eco47I GGWCC 2 cut(s) 205, 526
EcoRI GAATTC 1 cut(s) 79
EcoRII CCWGG 1 cut(s) 66
EcoT38I GRGCYC 1 cut(s) 400
FaeI CATG 2 cut(s) 155, 721
FatI CATG 2 cut(s) 151, 717
Fnu4HI GCNGC 4 cut(s) 374, 421, 424, 457
FokI GGATG 2 cut(s) 664, 818
FriOI GRGCYC 1 cut(s) 400
Fsp4HI GCNGC 4 cut(s) 374, 421, 424, 457
FspBI CTAG 2 cut(s) 233, 377
GlaI GCGC 2 cut(s) 197, 342
GluI GCNGC 4 cut(s) 374, 421, 424, 457
GsaI CCCAGC 1 cut(s) 89
HaeIII GGCC 2 cut(s) 149, 331
HapII CCGG 1 cut(s) 589
HhaI GCGC 2 cut(s) 198, 343
Hin1II CATG 2 cut(s) 155, 721
Hin6I GCGC 2 cut(s) 196, 341
HinP1I GCGC 2 cut(s) 196, 341
HincII GTYRAC 1 cut(s) 282
HindII GTYRAC 1 cut(s) 282
HinfI GANTC 2 cut(s) 100, 389
HpaII CCGG 1 cut(s) 589
HphI GGTGA 3 cut(s) 178, 500, 626
Hpy166II GTNNAC 1 cut(s) 282
Hpy188I TCNGA 8 cut(s) 17, 44, 109, 158, 205, 367, 388, 741
Hpy188III TCNNGA 4 cut(s) 267, 448, 518, 767
Hpy8I GTNNAC 1 cut(s) 282
Hpy99I CGWCG 1 cut(s) 273
HpyAV CCTTC 2 cut(s) 166, 208
HpyCH4V TGCA 8 cut(s) 168, 335, 373, 468, 501, 537, 666, 717
HpyF10VI GCNNNNNNNGC 4 cut(s) 420, 465, 663, 714
HpyF3I CTNAG 2 cut(s) 41, 387
Hsp92II CATG 2 cut(s) 155, 721
HspAI GCGC 2 cut(s) 196, 341
KspI CCGCGG 1 cut(s) 424
Kzo9I GATC 4 cut(s) 37, 181, 200, 272
LmnI GCTCC 2 cut(s) 15, 742
LpnPI CCDG 9 cut(s) 53, 71, 80, 345, 454, 602, 679, 729, 752
Lsp1109I GCAGC 2 cut(s) 385, 443
LweI GCATC 1 cut(s) 360
MaeI CTAG 2 cut(s) 233, 377
MaeIII GTNAC 3 cut(s) 26, 563, 701
MalI GATC 4 cut(s) 39, 183, 202, 274
MboI GATC 4 cut(s) 37, 181, 200, 272
MboII GAAGA 7 cut(s) 47, 117, 503, 506, 629, 683, 733
MflI RGATCY 1 cut(s) 37
MhlI GDGCHC 2 cut(s) 400, 659
MluCI AATT 1 cut(s) 79
MlyI GAGTC 2 cut(s) 94, 398
MmeI TCCRAC 2 cut(s) 132, 764
MnlI CCTC 8 cut(s) 23, 122, 199, 304, 307, 318, 321, 619
MspA1I CMGCKG 1 cut(s) 423
MspI CCGG 1 cut(s) 589
MspR9I CCNGG 2 cut(s) 68, 590
MvaI CCWGG 1 cut(s) 68
MvnI CGCG 1 cut(s) 423
MwoI GCNNNNNNNGC 4 cut(s) 420, 465, 663, 714
NciI CCSGG 1 cut(s) 590
NdeII GATC 4 cut(s) 37, 181, 200, 272
NlaIII CATG 2 cut(s) 155, 721
NlaIV GGNNCC 2 cut(s) 11, 738
NmeAIII GCCGAG 1 cut(s) 379
NmuCI GTSAC 2 cut(s) 26, 563
PceI AGGCCT 1 cut(s) 331
PkrI GCNGC 4 cut(s) 375, 422, 425, 458
Ple19I CGATCG 1 cut(s) 203
PleI GAGTC 2 cut(s) 94, 397
PpsI GAGTC 2 cut(s) 94, 397
Psp6I CCWGG 1 cut(s) 66
PspFI CCCAGC 1 cut(s) 85
PspGI CCWGG 1 cut(s) 66
PspN4I GGNNCC 2 cut(s) 11, 738
PspPI GGNCC 3 cut(s) 148, 205, 526
PsuI RGATCY 1 cut(s) 37
PvuI CGATCG 1 cut(s) 203
RsaI GTAC 1 cut(s) 514
RsaNI GTAC 1 cut(s) 513
Rsr2I CGGWCCG 1 cut(s) 205
RsrII CGGWCCG 1 cut(s) 205
SacII CCGCGG 1 cut(s) 424
SatI GCNGC 4 cut(s) 374, 421, 424, 457
Sau3AI GATC 4 cut(s) 37, 181, 200, 272
Sau96I GGNCC 3 cut(s) 148, 205, 526
SchI GAGTC 2 cut(s) 94, 398
ScrFI CCNGG 2 cut(s) 68, 590
SduI GDGCHC 2 cut(s) 400, 659
SfaNI GCATC 1 cut(s) 360
Sfr303I CCGCGG 1 cut(s) 424
SgrBI CCGCGG 1 cut(s) 424
SinI GGWCC 2 cut(s) 205, 526
SmlI CTYRAG 1 cut(s) 599
SmoI CTYRAG 1 cut(s) 599
Sse9I AATT 1 cut(s) 79
SseBI AGGCCT 1 cut(s) 331
SsiI CCGC 2 cut(s) 421, 423
SspMI CTAG 2 cut(s) 233, 377
StuI AGGCCT 1 cut(s) 331
StyD4I CCNGG 2 cut(s) 66, 588
TaqI TCGA 1 cut(s) 268
TaqII GACCGA 1 cut(s) 222
TasI AATT 1 cut(s) 79
TauI GCSGC 2 cut(s) 423, 426
TscAI CASTG 3 cut(s) 170, 433, 792
TseFI GTSAC 2 cut(s) 26, 563
TseI GCWGC 2 cut(s) 373, 456
Tsp45I GTSAC 2 cut(s) 26, 563
TspDTI ATGAA 5 cut(s) 83, 117, 252, 734, 822
TspRI CASTG 3 cut(s) 170, 433, 792
VpaK11BI GGWCC 2 cut(s) 205, 526
XapI RAATTY 1 cut(s) 79
XcmI CCANNNNNNNNNTGG 1 cut(s) 536
XspI CTAG 2 cut(s) 233, 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.