FvH4_5g18610

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0012294
Physical Location & Seq
Forward (+)
10703379 .. 10706567
3189 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g18610.t1

Sequence Viewer

Length: 1509 bp
ATGGGAGACCTCCTTTCAGCAGGCACCAACAGCTGCCTGGTTATTTTGATCTGGTCAGTATTGCTCGTAGTATTTCTGCTTGCAAAGTTTCTGCGGAAGGTTAAGGAAAAGAAGGTGGTAGGATCAAGAACATACAAGTTGCCGCCGGGAAGAAAAGGCTGGCCGATAGTCGGTGACAGCTTCGAATGGTACAATGCTGTTGCAGGTTCTCATCCCCCGCAGTTTGTTGAACAACAGACTAAAAGGTTTGGGAAGATATTCTCCTGCAGTTTGTTCGGAAAACGGTGTGTGGTATCCGCCGACCCGAGCTTTAACCGGTTTGTGATGCAAAATGAAGGTAAATTGTTTCAGTCCAGCTATCCGAAATCTTTCAAAGACTTGGTTGGGAAAAATGGTGTGATCACAGTGCATGGTGAGCAACAGAGGAAACTCCATAGCATCGCCTCCAATATGATGCGTCTTGATAAGCTTCTTAAGATTAATCTATTGGACGATGTTCAAATGGTTATCACTCAAACTTTGAGCAATTTCCCAACCAATCAGCCATTACTTCTCCAGGATGTTTGTAGAAAGTTAGCTATACATCTTATGGTTAATCAACTATTGGGAATTTCAAGTGAGTCGGAGATTAATGAGATGGCTCAGTGTTTCTCCGATTTCGTTGACGGTTGCCTCTCCGTTCCGATTAACTTGCCCGGTTTTGCTTATCACACTGCTATGAAGGCACGGGAGAAAATCATAACCAAGATAAATAGGATAATCAAAGAACAGAGAGAAGGAGCAACAGAAATTGGTAATGGCGTGCTCGGAAGACTACTGGAGGAAGATTGCTTAGCTGATGAGTCTGTTGCAGACTTCATTATCAATCTTCTCTTTGCTGGAAACGAAACAACTGCTAAAACAATGCTATTCGCAATCTATTTCCTTACCCAATGTCCCAGAGCAATGCAACAATTACTGGATGAACAAGACAGTCTCAGAAGAAGCAAATCTGTTGGAGAGGAAATGCTTACATGGCACGATTATAAAGCAATGCCTTTTACTCAGTGTGTCATCGATGAAACACTTCGACTTGGGGGAATTGCAATTTGGCTATTGAGAGAGGCAAAAGAAGACGTTGAGTACCAAGACTATGTTATTCCAAAAGGATGCTTTGTCGTTCCATTCCTCTCAGCTGTTCATTTGGATGAGAATGTGTATCATGACGCCCTCGCCTTCAATCCTTGGAGATGGATGGACAGTAAAAATCAGGAGAAAAGAAATTGGAGAAGTAGCCTGTACTTTGCACCCTTTGGAGGAGGAGCCAGATTCTGTCCAGGAGCTGAGTTGGCTCGCCTTCAAATTGCCCTTTTTCTCCATTATTTTGTCACAACATATAGCTGGACCCAAATCAAAGAGGATCGTATGTCCTTCTTTCCCTCGGCTCGTCTAGTGAATGGATTCCAAATCTGCGTAACTAGACGAAATGATGGAAACAAGCTAGAGGCCATGGAGGTGCAACAATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

503

Amino Acids

57.16

Weight (kDa)

8.48

Isoelectric Point (pI)

35.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 48 - 468 9.9e-61 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73340
fragaria_vesca FvH4_5g18610
malus_domestica MD14G1247400.v1.1
prunus_persica Prupe.5G245500_v2.0.a1
pyrus_communis pycom2874g00050
rosa_chinensis RchiOBHm_Chr7g0176891
rosa_laevigata RLG00000005575
rosa_multiflora Rmu_sc0005310.1_g000048
rosa_roxburghii Rroxscaffold_3G00276310
rosa_rugosa Rorug06G0401400 Rorug06G0401500 Rorug06G0401500 Rorug06G0401500 Rorug06G0401600
rosa_samantha Rh7AG001100 Rh7BG001500 Rh7CG000900 Rh7DG001200
rosa_wichuraiana Rw7G000080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1026
Acc36I ACCTGC 1 cut(s) 194
AccB1I GGYRCC 1 cut(s) 23
AciI CCGC 4 cut(s) 94, 143, 218, 297
AclWI GGATC 2 cut(s) 130, 1407
AcoI YGGCCR 1 cut(s) 161
AcsI RAATTY 1 cut(s) 609
AcyI GRCGYC 1 cut(s) 1206
AfaI GTAC 3 cut(s) 191, 1124, 1280
AfiI CCNNNNNNNGG 2 cut(s) 170, 1295
AflII CTTAAG 1 cut(s) 473
AgeI ACCGGT 1 cut(s) 315
AgsI TTSAA 6 cut(s) 230, 373, 500, 615, 1219, 1340
AjnI CCWGG 3 cut(s) 36, 555, 1315
AjuI GAANNNNNNNTTGG 2 cut(s) 1072, 1104
Alw21I GWGCWC 1 cut(s) 807
Alw26I GTCTC 1 cut(s) 980
AlwI GGATC 2 cut(s) 130, 1407
AlwNI CAGNNNCTG 2 cut(s) 1311, 1322
Ama87I CYCGRG 1 cut(s) 304
AoxI GGCC 2 cut(s) 161, 1485
ApeKI GCWGC 1 cut(s) 33
ApoI RAATTY 1 cut(s) 609
AseI ATTAAT 2 cut(s) 480, 630
AsiGI ACCGGT 1 cut(s) 315
Asp700I GAANNNNTTC 4 cut(s) 257, 368, 1065, 1439
AspS9I GGNCC 1 cut(s) 1383
AsuC2I CCSGG 2 cut(s) 147, 696
AsuHPI GGTGA 2 cut(s) 185, 425
AsuII TTCGAA 1 cut(s) 183
AvaI CYCGRG 1 cut(s) 304
AvaII GGWCC 1 cut(s) 1383
BanI GGYRCC 1 cut(s) 23
BbsI GAAGAC 2 cut(s) 817, 1119
Bbv12I GWGCWC 1 cut(s) 807
BbvI GCAGC 1 cut(s) 20
BccI CCATC 4 cut(s) 631, 1224, 1228, 1463
BcgI CGANNNNNNTGC 6 cut(s) 256, 290, 673, 707, 875, 909
BciT130I CCWGG 3 cut(s) 38, 557, 1317
BciVI GTATCC 1 cut(s) 304
BclI TGATCA 1 cut(s) 399
BcnI CCSGG 2 cut(s) 147, 696
BcoDI GTCTC 1 cut(s) 980
BfaI CTAG 3 cut(s) 1430, 1458, 1481
BfmI CTRYAG 1 cut(s) 265
BfrI CTTAAG 1 cut(s) 473
BfuAI ACCTGC 1 cut(s) 194
BfuI GTATCC 1 cut(s) 304
BisI GCNGC 2 cut(s) 34, 143
BlpI GCTNAGC 1 cut(s) 832
BlsI GCNGC 2 cut(s) 35, 144
Bme1390I CCNGG 5 cut(s) 38, 147, 557, 696, 1317
Bme18I GGWCC 1 cut(s) 1383
BmeT110I CYCGRG 1 cut(s) 304
BmgT120I GGNCC 1 cut(s) 1383
BmiI GGNNCC 3 cut(s) 25, 1303, 1385
BmrFI CCNGG 5 cut(s) 38, 147, 557, 696, 1317
BmsI GCATC 4 cut(s) 315, 444, 447, 1139
BpiI GAAGAC 2 cut(s) 817, 1119
BpmI CTGGAG 2 cut(s) 539, 839
Bpu1102I GCTNAGC 1 cut(s) 832
Bpu14I TTCGAA 1 cut(s) 183
BpuMI CCSGG 2 cut(s) 147, 696
Bsa29I ATCGAT 1 cut(s) 1056
BsaHI GRCGYC 1 cut(s) 1206
BsaJI CCNNGG 3 cut(s) 1223, 1419, 1488
BsaWI WCCGGW 1 cut(s) 315
Bsc4I CCNNNNNNNGG 2 cut(s) 170, 1295
Bse118I RCCGGY 1 cut(s) 315
Bse1I ACTGG 2 cut(s) 822, 963
Bse3DI GCAATG 2 cut(s) 951, 1038
BseBI CCWGG 3 cut(s) 38, 557, 1317
BseCI ATCGAT 1 cut(s) 1056
BseDI CCNNGG 3 cut(s) 1223, 1419, 1488
BseGI GGATG 6 cut(s) 211, 565, 967, 1154, 1192, 1239
BseLI CCNNNNNNNGG 2 cut(s) 170, 1295
BseMI GCAATG 2 cut(s) 951, 1038
BseMII CTCAG 5 cut(s) 656, 991, 1058, 1185, 1314
BseNI ACTGG 2 cut(s) 822, 963
BseRI GAGGAG 2 cut(s) 1311, 1314
BseXI GCAGC 1 cut(s) 20
BshFI GGCC 2 cut(s) 163, 1487
BshNI GGYRCC 1 cut(s) 23
BshTI ACCGGT 1 cut(s) 315
BshVI ATCGAT 1 cut(s) 1056
BsiHKAI GWGCWC 1 cut(s) 807
BsiHKCI CYCGRG 1 cut(s) 304
BsiSI CCGG 3 cut(s) 146, 316, 696
BslFI GGGAC 1 cut(s) 921
BslI CCNNNNNNNGG 2 cut(s) 170, 1295
BsmAI GTCTC 1 cut(s) 980
BsmFI GGGAC 1 cut(s) 921
BsnI GGCC 2 cut(s) 163, 1487
BsoBI CYCGRG 1 cut(s) 304
Bsp119I TTCGAA 1 cut(s) 183
Bsp1286I GDGCHC 1 cut(s) 807
Bsp143I GATC 4 cut(s) 48, 122, 399, 1399
Bsp1720I GCTNAGC 1 cut(s) 832
Bsp19I CCATGG 1 cut(s) 1488
BspACI CCGC 4 cut(s) 94, 143, 218, 297
BspANI GGCC 2 cut(s) 163, 1487
BspCNI CTCAG 5 cut(s) 655, 990, 1057, 1184, 1315
BspDI ATCGAT 1 cut(s) 1056
BspHI TCATGA 1 cut(s) 1201
BspLI GGNNCC 3 cut(s) 25, 1303, 1385
BspMAI CTGCAG 1 cut(s) 269
BspMI ACCTGC 1 cut(s) 194
BspPI GGATC 2 cut(s) 130, 1407
BspT104I TTCGAA 1 cut(s) 183
BspT107I GGYRCC 1 cut(s) 23
BspTI CTTAAG 1 cut(s) 473
BsrDI GCAATG 2 cut(s) 951, 1038
BsrFI RCCGGY 1 cut(s) 315
BsrI ACTGG 2 cut(s) 822, 963
BssAI RCCGGY 1 cut(s) 315
BssECI CCNNGG 3 cut(s) 1223, 1419, 1488
BssMI GATC 4 cut(s) 48, 122, 399, 1399
BssNI GRCGYC 1 cut(s) 1206
BssT1I CCWWGG 2 cut(s) 1223, 1488
Bst2UI CCWGG 3 cut(s) 38, 557, 1317
Bst4CI ACNGT 5 cut(s) 285, 406, 668, 974, 1241
BstACI GRCGYC 1 cut(s) 1206
BstAFI CTTAAG 1 cut(s) 473
BstBI TTCGAA 1 cut(s) 183
BstC8I GCNNGC 5 cut(s) 22, 81, 161, 803, 1333
BstDEI CTNAG 6 cut(s) 642, 832, 977, 1044, 1171, 1323
BstDSI CCRYGG 1 cut(s) 1488
BstF5I GGATG 6 cut(s) 211, 565, 967, 1154, 1192, 1239
BstKTI GATC 4 cut(s) 51, 125, 402, 1402
BstMAI GTCTC 1 cut(s) 980
BstMBI GATC 4 cut(s) 48, 122, 399, 1399
BstMWI GCNNNNNNNGC 5 cut(s) 30, 415, 722, 1015, 1328
BstNI CCWGG 3 cut(s) 38, 557, 1317
BstSCI CCNGG 5 cut(s) 36, 145, 555, 694, 1315
BstSFI CTRYAG 1 cut(s) 265
BstV1I GCAGC 1 cut(s) 20
BstV2I GAAGAC 2 cut(s) 817, 1119
Bsu15I ATCGAT 1 cut(s) 1056
BsuI GTATCC 1 cut(s) 304
BsuRI GGCC 2 cut(s) 163, 1487
BsuTUI ATCGAT 1 cut(s) 1056
BtgI CCRYGG 1 cut(s) 1488
BtgZI GCGATG 1 cut(s) 424
BtsCI GGATG 6 cut(s) 211, 565, 967, 1154, 1192, 1239
BtsI GCAGTG 1 cut(s) 711
BtsIMutI CAGTG 4 cut(s) 411, 650, 711, 1052
BveI ACCTGC 1 cut(s) 194
Cac8I GCNNGC 5 cut(s) 22, 81, 161, 803, 1333
CaiI CAGNNNCTG 2 cut(s) 1311, 1322
CciI TCATGA 1 cut(s) 1201
Cfr10I RCCGGY 1 cut(s) 315
Cfr13I GGNCC 1 cut(s) 1383
ClaI ATCGAT 1 cut(s) 1056
CseI GACGC 2 cut(s) 446, 1214
Csp6I GTAC 3 cut(s) 190, 1123, 1279
CspAI ACCGGT 1 cut(s) 315
CviAII CATG 4 cut(s) 410, 1014, 1202, 1489
CviQI GTAC 3 cut(s) 190, 1123, 1279
DdeI CTNAG 6 cut(s) 642, 832, 977, 1044, 1171, 1323
DpnI GATC 4 cut(s) 50, 124, 401, 1401
DpnII GATC 4 cut(s) 48, 122, 399, 1399
EaeI YGGCCR 1 cut(s) 161
EciI GGCGGA 1 cut(s) 286
Eco130I CCWWGG 2 cut(s) 1223, 1488
Eco47I GGWCC 1 cut(s) 1383
Eco88I CYCGRG 1 cut(s) 304
EcoRII CCWGG 3 cut(s) 36, 555, 1315
EcoT14I CCWWGG 2 cut(s) 1223, 1488
ErhI CCWWGG 2 cut(s) 1223, 1488
FaeI CATG 4 cut(s) 413, 1017, 1205, 1492
FaqI GGGAC 1 cut(s) 921
FatI CATG 4 cut(s) 409, 1013, 1201, 1488
FauI CCCGC 1 cut(s) 225
FbaI TGATCA 1 cut(s) 399
Fnu4HI GCNGC 2 cut(s) 34, 143
FokI GGATG 6 cut(s) 198, 572, 974, 1161, 1199, 1246
Fsp4HI GCNGC 2 cut(s) 34, 143
FspBI CTAG 3 cut(s) 1430, 1458, 1481
GluI GCNGC 2 cut(s) 34, 143
GsuI CTGGAG 2 cut(s) 539, 839
HaeIII GGCC 2 cut(s) 163, 1487
HapII CCGG 3 cut(s) 146, 316, 696
HgaI GACGC 2 cut(s) 446, 1214
Hin1I GRCGYC 1 cut(s) 1206
Hin1II CATG 4 cut(s) 413, 1017, 1205, 1492
HincII GTYRAC 1 cut(s) 664
HindII GTYRAC 1 cut(s) 664
HindIII AAGCTT 1 cut(s) 467
HinfI GANTC 4 cut(s) 620, 842, 1308, 1440
HpaII CCGG 3 cut(s) 146, 316, 696
HphI GGTGA 2 cut(s) 185, 425
Hpy166II GTNNAC 1 cut(s) 664
Hpy188I TCNGA 7 cut(s) 278, 363, 625, 655, 684, 809, 980
Hpy188III TCNNGA 4 cut(s) 126, 461, 1202, 1250
Hpy8I GTNNAC 1 cut(s) 664
HpyAV CCTTC 8 cut(s) 91, 106, 329, 715, 770, 1225, 1346, 1420
HpyCH4III ACNGT 5 cut(s) 285, 406, 668, 974, 1241
HpyCH4IV ACGT 1 cut(s) 1116
HpyF10VI GCNNNNNNNGC 5 cut(s) 30, 415, 722, 1015, 1328
HpyF3I CTNAG 6 cut(s) 642, 832, 977, 1044, 1171, 1323
HpySE526I ACGT 1 cut(s) 1116
Hsp92I GRCGYC 1 cut(s) 1206
Hsp92II CATG 4 cut(s) 413, 1017, 1205, 1492
Ksp22I TGATCA 1 cut(s) 399
Kzo9I GATC 4 cut(s) 48, 122, 399, 1399
LmnI GCTCC 3 cut(s) 779, 1301, 1319
Lsp1109I GCAGC 1 cut(s) 20
LweI GCATC 4 cut(s) 315, 444, 447, 1139
MaeI CTAG 3 cut(s) 1430, 1458, 1481
MaeII ACGT 1 cut(s) 1116
MaeIII GTNAC 3 cut(s) 173, 1366, 1453
MalI GATC 4 cut(s) 50, 124, 401, 1401
MboI GATC 4 cut(s) 48, 122, 399, 1399
MboII GAAGA 7 cut(s) 162, 265, 822, 836, 860, 993, 1124
MhlI GDGCHC 1 cut(s) 807
MluCI AATT 9 cut(s) 341, 526, 609, 789, 953, 1080, 1086, 1261, 1341
MlyI GAGTC 2 cut(s) 629, 851
MmeI TCCRAC 2 cut(s) 603, 976
MroXI GAANNNNTTC 4 cut(s) 257, 368, 1065, 1439
MseI TTAA 7 cut(s) 102, 312, 474, 480, 594, 630, 687
MslI CAYNNNNRTG 3 cut(s) 716, 1185, 1493
MspA1I CMGCKG 2 cut(s) 33, 1175
MspCI CTTAAG 1 cut(s) 473
MspI CCGG 3 cut(s) 146, 316, 696
MspR9I CCNGG 5 cut(s) 38, 147, 557, 696, 1317
MvaI CCWGG 3 cut(s) 38, 557, 1317
MwoI GCNNNNNNNGC 5 cut(s) 30, 415, 722, 1015, 1328
NciI CCSGG 2 cut(s) 147, 696
NcoI CCATGG 1 cut(s) 1488
NdeII GATC 4 cut(s) 48, 122, 399, 1399
NlaIII CATG 4 cut(s) 413, 1017, 1205, 1492
NlaIV GGNNCC 3 cut(s) 25, 1303, 1385
NmeAIII GCCGAG 1 cut(s) 1400
NmuCI GTSAC 2 cut(s) 173, 1366
NspV TTCGAA 1 cut(s) 183
PagI TCATGA 1 cut(s) 1201
PdmI GAANNNNTTC 4 cut(s) 257, 368, 1065, 1439
PfeI GAWTC 2 cut(s) 1308, 1440
PfoI TCCNGGA 2 cut(s) 555, 1315
PinAI ACCGGT 1 cut(s) 315
PkrI GCNGC 2 cut(s) 35, 144
PleI GAGTC 2 cut(s) 628, 850
PpsI GAGTC 2 cut(s) 628, 850
PshBI ATTAAT 2 cut(s) 480, 630
PsiI TTATAA 1 cut(s) 1026
Psp6I CCWGG 3 cut(s) 36, 555, 1315
PspGI CCWGG 3 cut(s) 36, 555, 1315
PspN4I GGNNCC 3 cut(s) 25, 1303, 1385
PspPI GGNCC 1 cut(s) 1383
PstI CTGCAG 1 cut(s) 269
PstNI CAGNNNCTG 2 cut(s) 1311, 1322
PvuII CAGCTG 2 cut(s) 33, 1175
RsaI GTAC 3 cut(s) 191, 1124, 1280
RsaNI GTAC 3 cut(s) 190, 1123, 1279
RseI CAYNNNNRTG 3 cut(s) 716, 1185, 1493
SaqAI TTAA 7 cut(s) 102, 312, 474, 480, 594, 630, 687
SatI GCNGC 2 cut(s) 34, 143
Sau3AI GATC 4 cut(s) 48, 122, 399, 1399
Sau96I GGNCC 1 cut(s) 1383
SchI GAGTC 2 cut(s) 629, 851
ScrFI CCNGG 5 cut(s) 38, 147, 557, 696, 1317
SduI GDGCHC 1 cut(s) 807
SfaNI GCATC 4 cut(s) 315, 444, 447, 1139
SfcI CTRYAG 1 cut(s) 265
SfuI TTCGAA 1 cut(s) 183
SinI GGWCC 1 cut(s) 1383
SmiMI CAYNNNNRTG 3 cut(s) 716, 1185, 1493
SmlI CTYRAG 1 cut(s) 473
SmoI CTYRAG 1 cut(s) 473
Sse9I AATT 9 cut(s) 341, 526, 609, 789, 953, 1080, 1086, 1261, 1341
SsiI CCGC 4 cut(s) 94, 143, 218, 297
SspI AATATT 1 cut(s) 1505
SspMI CTAG 3 cut(s) 1430, 1458, 1481
StyD4I CCNGG 5 cut(s) 36, 145, 555, 694, 1315
StyI CCWWGG 2 cut(s) 1223, 1488
TaaI ACNGT 5 cut(s) 285, 406, 668, 974, 1241
TaiI ACGT 1 cut(s) 1119
TaqI TCGA 3 cut(s) 183, 1056, 1069
TasI AATT 9 cut(s) 341, 526, 609, 789, 953, 1080, 1086, 1261, 1341
TatI WGTACW 1 cut(s) 1278
TauI GCSGC 1 cut(s) 145
TfiI GAWTC 2 cut(s) 1308, 1440
Tru1I TTAA 7 cut(s) 102, 312, 474, 480, 594, 630, 687
Tru9I TTAA 7 cut(s) 102, 312, 474, 480, 594, 630, 687
TscAI CASTG 4 cut(s) 411, 650, 718, 1052
TseFI GTSAC 2 cut(s) 173, 1366
TseI GCWGC 1 cut(s) 33
Tsp45I GTSAC 2 cut(s) 173, 1366
TspDTI ATGAA 6 cut(s) 348, 734, 847, 978, 1074, 1169
TspGWI ACGGA 1 cut(s) 667
TspRI CASTG 4 cut(s) 411, 650, 718, 1052
Vha464I CTTAAG 1 cut(s) 473
VpaK11BI GGWCC 1 cut(s) 1383
VspI ATTAAT 2 cut(s) 480, 630
XapI RAATTY 1 cut(s) 609
XcmI CCANNNNNNNNNTGG 1 cut(s) 34
XmnI GAANNNNTTC 4 cut(s) 257, 368, 1065, 1439
XspI CTAG 3 cut(s) 1430, 1458, 1481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.