RLG00000005575

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0012294
Physical Location & Seq
Forward (+)
68653787 .. 68658579
4793 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005575

Sequence Viewer

Length: 1650 bp
ATGGGAGACCTCTTTTCAGCAGGCACCAACAGCTACCTGGTTATTATGATCTGGTCAGTATTGTTCGTATTATTTGTTGCAAGATTTCTGCGGAAGATCAAGGAAAAGAAGGTGGTAGGATCAAGAATATACAAGTTGCCACCGGGAAGAAGAGGCTGGCCGATAGTAGGTGATAGCTTCGAATGGTACAATGCTGTTGCAAGTTCTCATCCCCCGCAGTTTGTTGAACAACAGATCAAAAGGTTTGGGAAGATATTCTCCTGCAGTTTATTTGGAAAACGGTGTGTGGTATCAGCAGACCCGAGCTTTAACCGGTTTGTAATGCAAAATGAAGGTAAATTGTTTCAGTCCAGCTATCCAAAATCTTTCAAAGACTTGGTAGGGAAAAATGGTGTGATCACGGTGCATGGTGAGCAACAGAGGAAACTCCATAGCATCGCCTCCAATATGATGCGGCTTGATAAGCTACTTAAAATTAATTTATTGGATGATATTCAAATGGTTATCACTCAAGCTTTGAGCAATTACCCAACCAATCAGCCATTACTTCTTCAGGATCTTTGTAGAAAGTTGGCTATACATCTTATGGTTAATCAACTATTGGGAATTTCGAGTGAGTTAGAGATTAATGAGATGGCTCACTGTTTCTCCGATTTCGTTGATGGTTGTCTCTCCGTTCCAATCAACTTGCCCGGCTGTGCTTATCACACTGCCATGAAGGCAAGGGAGAAAATCATAACCAAGATAAATAGGATAATCAAAGAGCAGAGAGAAGGTGCAACGGAAATAGGTAATGGCGTGCTTAGAAGAATACTGGAGGAAGAAAGCTTAGCTGATGAGTCTGTAGCAGACTTCATTATCAATCTTCTCTTTGCTGGCAACGAAACAACTGCTAAAACAATGCTATTTGCAGTCTATTTCCTTACCCAGTGTCCCACAGCAATGCAACAATTACTGGATGAACAAGATAGTCTCAGAAGAAGCAAATCTGTTGGAGAAGAAATGCTTACATGGCACGATTATAAAGCAATGCCTTTTACTCAGTGTGTCATTGATGAAACACTTCGACTTGGAGGAATTGCAATTTGGTTACTAAGGGAGGCAAAAGAAGACGTTGAGTACCAAGACTATGTTATTCCCAAAGGATGCTTTGTCGTTCCATTCCTCTCAGCAGTTCATTTGGATGAAAATGTGTATAATGAAGCCCTCGCCTTCAGTCCTTGGAGATGGATGGACAGTGAAAATCAGGAGAAAAGAAATTGGAGAAGTAGCCTATACTTTGCACCCTTTGGAGGAGGACCTAGATTTTGTCCAGGAGCTGAGTTGGCTCGCCTTCAAATTGCCCTTTTCCTCCATTACTTTGTCACAACATATCGGTGGACCCAACTTAAAGACGATCGGGAATCGCCGGAGAAGCGATTGTGGTTCCTGGCAGACCACCGGAGTGTGACAGTGCCGGTGAACATTGATCAGAATGCCGCTAATGCCCAGAACTTGTACCTGCCTTTCCCGAGTACTAGGCTTGAATTAGAGCTGTCCTTCTTTGTGTCGGCGGTTGTCATCGTCGGAAGACCATTGTCATCCTTCATTTGTGGACCAGATATCTTCCTTGACTATTTAAGATCCTTAATTTTTTCTTTAAGTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

550

Amino Acids

62.64

Weight (kDa)

7.54

Isoelectric Point (pI)

40.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 47 - 471 8.6e-61 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73340
fragaria_vesca FvH4_5g18610
malus_domestica MD14G1247400.v1.1
prunus_persica Prupe.5G245500_v2.0.a1
pyrus_communis pycom2874g00050
rosa_chinensis RchiOBHm_Chr7g0176891
rosa_laevigata RLG00000005575
rosa_multiflora Rmu_sc0005310.1_g000048
rosa_roxburghii Rroxscaffold_3G00276310
rosa_rugosa Rorug06G0401400 Rorug06G0401500 Rorug06G0401500 Rorug06G0401500 Rorug06G0401600
rosa_samantha Rh7AG001100 Rh7BG001500 Rh7CG000900 Rh7DG001200
rosa_wichuraiana Rw7G000080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1023
Acc36I ACCTGC 1 cut(s) 1509
AccB1I GGYRCC 1 cut(s) 23
AciI CCGC 5 cut(s) 91, 215, 454, 1479, 1553
AclWI GGATC 3 cut(s) 127, 564, 1617
AcoI YGGCCR 1 cut(s) 158
AcsI RAATTY 1 cut(s) 606
AcuI CTGAAG 2 cut(s) 536, 1198
AfaI GTAC 4 cut(s) 188, 1121, 1499, 1516
AfiI CCNNNNNNNGG 2 cut(s) 167, 1292
AgeI ACCGGT 1 cut(s) 312
AgsI TTSAA 5 cut(s) 227, 370, 497, 1337, 1526
AjnI CCWGG 3 cut(s) 36, 1312, 1428
AjuI GAANNNNNNNTTGG 2 cut(s) 1069, 1101
AleI CACNNNNGTG 1 cut(s) 1443
Alw26I GTCTC 2 cut(s) 674, 977
AlwI GGATC 3 cut(s) 127, 564, 1617
AlwNI CAGNNNCTG 1 cut(s) 1319
Ama87I CYCGRG 2 cut(s) 301, 1510
AoxI GGCC 1 cut(s) 158
ApoI RAATTY 1 cut(s) 606
ArsI GACNNNNNNTTYG 2 cut(s) 1290, 1322
AseI ATTAAT 2 cut(s) 477, 627
AsiGI ACCGGT 1 cut(s) 312
Asp700I GAANNNNTTC 2 cut(s) 254, 1062
AspS9I GGNCC 3 cut(s) 1298, 1380, 1595
AsuC2I CCSGG 2 cut(s) 144, 693
AsuHPI GGTGA 3 cut(s) 182, 422, 1471
AsuII TTCGAA 1 cut(s) 180
AvaI CYCGRG 2 cut(s) 301, 1510
AvaII GGWCC 3 cut(s) 1298, 1380, 1595
BanI GGYRCC 1 cut(s) 23
BbsI GAAGAC 2 cut(s) 1116, 1576
BccI CCATC 4 cut(s) 628, 656, 1221, 1225
BcgI CGANNNNNNTGC 2 cut(s) 872, 906
BciT130I CCWGG 3 cut(s) 38, 1314, 1430
BclI TGATCA 2 cut(s) 396, 1468
BcnI CCSGG 2 cut(s) 144, 693
BcoDI GTCTC 2 cut(s) 674, 977
BfaI CTAG 2 cut(s) 1302, 1518
BfmI CTRYAG 2 cut(s) 262, 843
BfuAI ACCTGC 1 cut(s) 1509
BglI GCCNNNNNGGC 1 cut(s) 719
BisI GCNGC 2 cut(s) 455, 1479
BlpI GCTNAGC 1 cut(s) 829
BlsI GCNGC 2 cut(s) 456, 1480
BmcAI AGTACT 1 cut(s) 1516
Bme1390I CCNGG 5 cut(s) 38, 144, 693, 1314, 1430
Bme18I GGWCC 3 cut(s) 1298, 1380, 1595
BmeT110I CYCGRG 2 cut(s) 301, 1510
BmgT120I GGNCC 3 cut(s) 1298, 1380, 1595
BmiI GGNNCC 3 cut(s) 25, 1382, 1427
BmrFI CCNGG 5 cut(s) 38, 144, 693, 1314, 1430
BmrI ACTGGG 1 cut(s) 922
BmsI GCATC 3 cut(s) 441, 444, 1136
BmuI ACTGGG 1 cut(s) 922
BoxI GACNNNNGTC 1 cut(s) 1576
BpiI GAAGAC 2 cut(s) 1116, 1576
BpmI CTGGAG 1 cut(s) 836
Bpu1102I GCTNAGC 1 cut(s) 829
Bpu14I TTCGAA 1 cut(s) 180
BpuEI CTTGAG 1 cut(s) 495
BpuMI CCSGG 2 cut(s) 144, 693
BsaJI CCNNGG 1 cut(s) 1220
BsaWI WCCGGW 2 cut(s) 312, 1440
BsaXI ACNNNNNCTCC 2 cut(s) 632, 662
Bsc4I CCNNNNNNNGG 2 cut(s) 167, 1292
Bse118I RCCGGY 2 cut(s) 312, 1456
Bse1I ACTGG 3 cut(s) 819, 928, 960
Bse3DI GCAATG 2 cut(s) 948, 1035
BseBI CCWGG 3 cut(s) 38, 1314, 1430
BseDI CCNNGG 1 cut(s) 1220
BseGI GGATG 7 cut(s) 208, 493, 964, 1151, 1189, 1236, 1580
BseLI CCNNNNNNNGG 2 cut(s) 167, 1292
BseMI GCAATG 2 cut(s) 948, 1035
BseMII CTCAG 4 cut(s) 988, 1055, 1182, 1311
BseNI ACTGG 3 cut(s) 819, 928, 960
BseRI GAGGAG 1 cut(s) 1308
Bsh1285I CGRYCG 1 cut(s) 1399
BshFI GGCC 1 cut(s) 160
BshNI GGYRCC 1 cut(s) 23
BshTI ACCGGT 1 cut(s) 312
BsiEI CGRYCG 1 cut(s) 1399
BsiHKCI CYCGRG 2 cut(s) 301, 1510
BsiSI CCGG 6 cut(s) 143, 313, 693, 1409, 1441, 1457
BslFI GGGAC 1 cut(s) 918
BslI CCNNNNNNNGG 2 cut(s) 167, 1292
BsmAI GTCTC 2 cut(s) 674, 977
BsmFI GGGAC 1 cut(s) 918
BsmI GAATGC 1 cut(s) 1480
BsnI GGCC 1 cut(s) 160
BsoBI CYCGRG 2 cut(s) 301, 1510
Bsp119I TTCGAA 1 cut(s) 180
Bsp143I GATC 9 cut(s) 48, 96, 119, 234, 396, 556, 1396, 1468, 1622
Bsp1720I GCTNAGC 1 cut(s) 829
BspACI CCGC 5 cut(s) 91, 215, 454, 1479, 1553
BspANI GGCC 1 cut(s) 160
BspCNI CTCAG 4 cut(s) 987, 1054, 1181, 1312
BspLI GGNNCC 3 cut(s) 25, 1382, 1427
BspMAI CTGCAG 1 cut(s) 266
BspMI ACCTGC 1 cut(s) 1509
BspPI GGATC 3 cut(s) 127, 564, 1617
BspT104I TTCGAA 1 cut(s) 180
BspT107I GGYRCC 1 cut(s) 23
BsrDI GCAATG 2 cut(s) 948, 1035
BsrFI RCCGGY 2 cut(s) 312, 1456
BsrI ACTGG 3 cut(s) 819, 928, 960
BssAI RCCGGY 2 cut(s) 312, 1456
BssECI CCNNGG 1 cut(s) 1220
BssMI GATC 9 cut(s) 48, 96, 119, 234, 396, 556, 1396, 1468, 1622
BssT1I CCWWGG 1 cut(s) 1220
Bst2UI CCWGG 3 cut(s) 38, 1314, 1430
Bst4CI ACNGT 5 cut(s) 282, 403, 644, 1238, 1453
Bst6I CTCTTC 1 cut(s) 145
BstBI TTCGAA 1 cut(s) 180
BstC8I GCNNGC 5 cut(s) 22, 158, 800, 877, 1330
BstDEI CTNAG 7 cut(s) 803, 829, 974, 1041, 1094, 1168, 1320
BstF5I GGATG 7 cut(s) 208, 493, 964, 1151, 1189, 1236, 1580
BstKTI GATC 9 cut(s) 51, 99, 122, 237, 399, 559, 1399, 1471, 1625
BstMAI GTCTC 2 cut(s) 674, 977
BstMBI GATC 9 cut(s) 48, 96, 119, 234, 396, 556, 1396, 1468, 1622
BstMCI CGRYCG 1 cut(s) 1399
BstMWI GCNNNNNNNGC 8 cut(s) 30, 412, 463, 719, 1012, 1325, 1414, 1484
BstNI CCWGG 3 cut(s) 38, 1314, 1430
BstPAI GACNNNNGTC 1 cut(s) 1576
BstSCI CCNGG 5 cut(s) 36, 142, 691, 1312, 1428
BstSFI CTRYAG 2 cut(s) 262, 843
BstV2I GAAGAC 2 cut(s) 1116, 1576
BstX2I RGATCY 2 cut(s) 556, 1622
BstYI RGATCY 2 cut(s) 556, 1622
BsuRI GGCC 1 cut(s) 160
BtgZI GCGATG 1 cut(s) 421
BtsCI GGATG 7 cut(s) 208, 493, 964, 1151, 1189, 1236, 1580
BtsI GCAGTG 1 cut(s) 708
BtsIMutI CAGTG 6 cut(s) 640, 708, 935, 1049, 1243, 1458
BveI ACCTGC 1 cut(s) 1509
Cac8I GCNNGC 5 cut(s) 22, 158, 800, 877, 1330
CaiI CAGNNNCTG 1 cut(s) 1319
Cfr10I RCCGGY 2 cut(s) 312, 1456
Cfr13I GGNCC 3 cut(s) 1298, 1380, 1595
CsiI ACCWGGT 1 cut(s) 36
Csp6I GTAC 4 cut(s) 187, 1120, 1498, 1515
CspAI ACCGGT 1 cut(s) 312
CviAII CATG 3 cut(s) 407, 715, 1011
CviQI GTAC 4 cut(s) 187, 1120, 1498, 1515
DdeI CTNAG 7 cut(s) 803, 829, 974, 1041, 1094, 1168, 1320
DpnI GATC 9 cut(s) 50, 98, 121, 236, 398, 558, 1398, 1470, 1624
DpnII GATC 9 cut(s) 48, 96, 119, 234, 396, 556, 1396, 1468, 1622
EaeI YGGCCR 1 cut(s) 158
Eam1104I CTCTTC 1 cut(s) 145
EarI CTCTTC 1 cut(s) 145
Eco130I CCWWGG 1 cut(s) 1220
Eco32I GATATC 1 cut(s) 1603
Eco47I GGWCC 3 cut(s) 1298, 1380, 1595
Eco57I CTGAAG 2 cut(s) 536, 1198
Eco88I CYCGRG 2 cut(s) 301, 1510
EcoO109I RGGNCCY 1 cut(s) 1298
EcoRII CCWGG 3 cut(s) 36, 1312, 1428
EcoRV GATATC 1 cut(s) 1603
EcoT14I CCWWGG 1 cut(s) 1220
ErhI CCWWGG 1 cut(s) 1220
FaeI CATG 3 cut(s) 410, 718, 1014
FalI AAGNNNNNCTT 2 cut(s) 990, 1022
FaqI GGGAC 1 cut(s) 918
FatI CATG 3 cut(s) 406, 714, 1010
FauI CCCGC 1 cut(s) 222
FbaI TGATCA 2 cut(s) 396, 1468
Fnu4HI GCNGC 2 cut(s) 455, 1479
FokI GGATG 7 cut(s) 195, 500, 971, 1158, 1196, 1243, 1567
Fsp4HI GCNGC 2 cut(s) 455, 1479
FspBI CTAG 2 cut(s) 1302, 1518
GluI GCNGC 2 cut(s) 455, 1479
GsuI CTGGAG 1 cut(s) 836
HaeIII GGCC 1 cut(s) 160
HapII CCGG 6 cut(s) 143, 313, 693, 1409, 1441, 1457
Hin1II CATG 3 cut(s) 410, 718, 1014
HindIII AAGCTT 2 cut(s) 513, 826
HinfI GANTC 2 cut(s) 839, 1403
HpaII CCGG 6 cut(s) 143, 313, 693, 1409, 1441, 1457
HphI GGTGA 3 cut(s) 182, 422, 1471
Hpy166II GTNNAC 3 cut(s) 1380, 1462, 1595
Hpy188I TCNGA 4 cut(s) 652, 977, 1473, 1568
Hpy188III TCNNGA 5 cut(s) 123, 554, 1247, 1400, 1510
Hpy8I GTNNAC 3 cut(s) 1380, 1462, 1595
Hpy99I CGWCG 1 cut(s) 1568
HpyAV CCTTC 8 cut(s) 103, 326, 712, 767, 1222, 1343, 1549, 1594
HpyCH4III ACNGT 5 cut(s) 282, 403, 644, 1238, 1453
HpyCH4IV ACGT 1 cut(s) 1113
HpyF10VI GCNNNNNNNGC 8 cut(s) 30, 412, 463, 719, 1012, 1325, 1414, 1484
HpyF3I CTNAG 7 cut(s) 803, 829, 974, 1041, 1094, 1168, 1320
HpySE526I ACGT 1 cut(s) 1113
Hsp92II CATG 3 cut(s) 410, 718, 1014
Ksp22I TGATCA 2 cut(s) 396, 1468
Kzo9I GATC 9 cut(s) 48, 96, 119, 234, 396, 556, 1396, 1468, 1622
LmnI GCTCC 1 cut(s) 1316
LweI GCATC 3 cut(s) 441, 444, 1136
MabI ACCWGGT 1 cut(s) 36
MaeI CTAG 2 cut(s) 1302, 1518
MaeII ACGT 1 cut(s) 1113
MaeIII GTNAC 3 cut(s) 1089, 1363, 1447
MalI GATC 9 cut(s) 50, 98, 121, 236, 398, 558, 1398, 1470, 1624
MboI GATC 9 cut(s) 48, 96, 119, 234, 396, 556, 1396, 1468, 1622
MflI RGATCY 2 cut(s) 556, 1622
MlyI GAGTC 1 cut(s) 848
MmeI TCCRAC 2 cut(s) 973, 1546
MroXI GAANNNNTTC 2 cut(s) 254, 1062
MseI TTAA 9 cut(s) 309, 471, 477, 591, 627, 1389, 1619, 1628, 1640
MslI CAYNNNNRTG 5 cut(s) 713, 941, 1182, 1375, 1443
MspI CCGG 6 cut(s) 143, 313, 693, 1409, 1441, 1457
MspR9I CCNGG 5 cut(s) 38, 144, 693, 1314, 1430
Mva1269I GAATGC 1 cut(s) 1480
MvaI CCWGG 3 cut(s) 38, 1314, 1430
MwoI GCNNNNNNNGC 8 cut(s) 30, 412, 463, 719, 1012, 1325, 1414, 1484
NciI CCSGG 2 cut(s) 144, 693
NdeII GATC 9 cut(s) 48, 96, 119, 234, 396, 556, 1396, 1468, 1622
NlaIII CATG 3 cut(s) 410, 718, 1014
NlaIV GGNNCC 3 cut(s) 25, 1382, 1427
NmuCI GTSAC 2 cut(s) 1363, 1447
NspV TTCGAA 1 cut(s) 180
OliI CACNNNNGTG 1 cut(s) 1443
PctI GAATGC 1 cut(s) 1480
PdmI GAANNNNTTC 2 cut(s) 254, 1062
PfeI GAWTC 1 cut(s) 1403
PfoI TCCNGGA 1 cut(s) 1312
PinAI ACCGGT 1 cut(s) 312
PkrI GCNGC 2 cut(s) 456, 1480
Ple19I CGATCG 1 cut(s) 1399
PleI GAGTC 1 cut(s) 847
PpsI GAGTC 1 cut(s) 847
PpuMI RGGWCCY 1 cut(s) 1298
PshAI GACNNNNGTC 1 cut(s) 1576
PshBI ATTAAT 2 cut(s) 477, 627
PsiI TTATAA 1 cut(s) 1023
Psp5II RGGWCCY 1 cut(s) 1298
Psp6I CCWGG 3 cut(s) 36, 1312, 1428
PspGI CCWGG 3 cut(s) 36, 1312, 1428
PspN4I GGNNCC 3 cut(s) 25, 1382, 1427
PspPI GGNCC 3 cut(s) 1298, 1380, 1595
PspPPI RGGWCCY 1 cut(s) 1298
PstI CTGCAG 1 cut(s) 266
PstNI CAGNNNCTG 1 cut(s) 1319
PsuI RGATCY 2 cut(s) 556, 1622
PvuI CGATCG 1 cut(s) 1399
RsaI GTAC 4 cut(s) 188, 1121, 1499, 1516
RsaNI GTAC 4 cut(s) 187, 1120, 1498, 1515
RseI CAYNNNNRTG 5 cut(s) 713, 941, 1182, 1375, 1443
SaqAI TTAA 9 cut(s) 309, 471, 477, 591, 627, 1389, 1619, 1628, 1640
SatI GCNGC 2 cut(s) 455, 1479
Sau3AI GATC 9 cut(s) 48, 96, 119, 234, 396, 556, 1396, 1468, 1622
Sau96I GGNCC 3 cut(s) 1298, 1380, 1595
ScaI AGTACT 1 cut(s) 1516
SchI GAGTC 1 cut(s) 848
ScrFI CCNGG 5 cut(s) 38, 144, 693, 1314, 1430
SexAI ACCWGGT 1 cut(s) 36
SfaNI GCATC 3 cut(s) 441, 444, 1136
SfcI CTRYAG 2 cut(s) 262, 843
SfuI TTCGAA 1 cut(s) 180
SinI GGWCC 3 cut(s) 1298, 1380, 1595
SmiMI CAYNNNNRTG 5 cut(s) 713, 941, 1182, 1375, 1443
SmlI CTYRAG 1 cut(s) 510
SmoI CTYRAG 1 cut(s) 510
SsiI CCGC 5 cut(s) 91, 215, 454, 1479, 1553
SspMI CTAG 2 cut(s) 1302, 1518
StyD4I CCNGG 5 cut(s) 36, 142, 691, 1312, 1428
StyI CCWWGG 1 cut(s) 1220
TaaI ACNGT 5 cut(s) 282, 403, 644, 1238, 1453
TaiI ACGT 1 cut(s) 1116
TaqI TCGA 3 cut(s) 180, 611, 1066
TatI WGTACW 1 cut(s) 1514
TauI GCSGC 2 cut(s) 457, 1481
TfiI GAWTC 1 cut(s) 1403
Tru1I TTAA 9 cut(s) 309, 471, 477, 591, 627, 1389, 1619, 1628, 1640
Tru9I TTAA 9 cut(s) 309, 471, 477, 591, 627, 1389, 1619, 1628, 1640
TscAI CASTG 6 cut(s) 647, 715, 935, 1049, 1243, 1458
TseFI GTSAC 2 cut(s) 1363, 1447
Tsp45I GTSAC 2 cut(s) 1363, 1447
TspDTI ATGAA 9 cut(s) 345, 731, 844, 975, 1071, 1166, 1200, 1215, 1576
TspGWI ACGGA 2 cut(s) 664, 797
TspRI CASTG 6 cut(s) 647, 715, 935, 1049, 1243, 1458
VpaK11BI GGWCC 3 cut(s) 1298, 1380, 1595
VspI ATTAAT 2 cut(s) 477, 627
XapI RAATTY 1 cut(s) 606
XcmI CCANNNNNNNNNTGG 1 cut(s) 34
XmnI GAANNNNTTC 2 cut(s) 254, 1062
XspI CTAG 2 cut(s) 1302, 1518
ZrmI AGTACT 1 cut(s) 1516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.