Rh7DG001200

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0012294
Physical Location & Seq
Reverse (-)
137929 .. 142518
4590 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG001200.1

Sequence Viewer

Length: 1473 bp
ATGGGAGACGTCTTTTCAGCAGGCACCAACAGCTACCTGGTTATTATGATCTGGTCAGTATTGTTCGTATTATTTGTTGCAAGATTTCTGCGGAAGATCAAGGAAAAGAAGGTGGTAGGATCAAGAATATACAAGTTGCCACCGGGAAGAAGAGGCTGGCCGATAGTTGGTGACAGCTTCGAATGGTACAATGCTGTTGCAAGTTCTCATCCCCCGCAGTTTGTTGAACAACAGATCAAAAGGTTTGGGAAGATATTCTCCTGCTGTTTATTTGGAAAACGGTGTGTGGTATCAGCAGACCCGAGCTTTAACCGGTTTGTAATGCAAAATGAGGGTAAATTGTTTCAGTCCAGCTATCCAAAATCTTTCAAAGACTTGGTAGGGAAAAATGGTGTGATCACGGTGCATGGTGAGCAACAGAGGAAACTCCATAGCATCGCCTCCAATATGATGCGTCTTGATAAGCTACTTAAAATTAATTTATTGGATGATATTCAAATGGTTATCACTCAAGCTTTGAGCAATTACCCAACCAATCAGCCATTACTTCTTCAGGATCTTTGTAGAAAGTTGGCTATACATCTTATGGTTAATCAACTATTGGGAATTTCGAGTGAGTTAGAGATTAATGAGATGGCTCAGTGTTTCTCCGATTTCGTTGATGGTTGTCTCTCCGTTCCAATCAACTTGCCCGGCTGTGCTTATCACACTGCCATGAAGGCAAGGGAGAAAATCATAACCAAGATAAATAGGATAATCAAAGAACAGAGAGAAGGTGCAACGGAAATAGGTAATGGCGTGCTTGGAAGAATACTGGAGGAAGAAAGCTTAGCTGATGAGTCTGTAGCAGACTTCATTATCAATCTTCTCTTTGCTGGCAACGAAACAACTGCTAAAACAATGCTATTTGCAGTCTATTTCCTTACCCAGTGTCCCACAGCAATGCAACAATTACTGGATGAACAAGACAGTCTCAGAAGAAGCAAATCTGTTGGAGAAGAAATGCTTACATGGCACGATTATAAAGCAATGCCTTTTACTCAGTGTGTCATTGATGAAACACTTCGACTTGGAGGAATTGCAATTTGGTTACTAAGGGAGGCAAAAGAAGACGTTGAGTACCAAGACTATGTTATTCCCAAAGGATGCTTTGTCGTTCCATTCCTCTCAGCAGTTCATTTGGATGAAAATGTGTATAATGAAGCCCTCGCCTTCAGTCCTTGGAGATGGATGGACAGTGAAAATCAGGAGAAAAGAAATTGGAGAAGTAGCCTATACTTTGCACCCTTTGGAGGAGGACCTAGATTTTGTCCAGGAGCTGAGTTGGCTCGCCTTCAAATTGCCCTTTTCCTCCATTACTTTGTCACAACATATCGGTGGACCCAACTTAAAGACGATCGTATGTCCTTCTTTCCCTCGGCTCGTTTAATGAATGGCTTCCAAATCGACATAACTAGACGACATGATCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

490

Amino Acids

56.11

Weight (kDa)

8.2

Isoelectric Point (pI)

37.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 47 - 470 5e-60 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73340
fragaria_vesca FvH4_5g18610
malus_domestica MD14G1247400.v1.1
prunus_persica Prupe.5G245500_v2.0.a1
pyrus_communis pycom2874g00050
rosa_chinensis RchiOBHm_Chr7g0176891
rosa_laevigata RLG00000005575
rosa_multiflora Rmu_sc0005310.1_g000048
rosa_roxburghii Rroxscaffold_3G00276310
rosa_rugosa Rorug06G0401400 Rorug06G0401500 Rorug06G0401500 Rorug06G0401500 Rorug06G0401600
rosa_samantha Rh7AG001100 Rh7BG001500 Rh7CG000900 Rh7DG001200
rosa_wichuraiana Rw7G000080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1023
AatII GACGTC 1 cut(s) 12
AccB1I GGYRCC 1 cut(s) 23
AciI CCGC 2 cut(s) 91, 215
AclWI GGATC 2 cut(s) 127, 564
AcoI YGGCCR 1 cut(s) 158
AcsI RAATTY 1 cut(s) 606
AcuI CTGAAG 2 cut(s) 536, 1198
AcyI GRCGYC 1 cut(s) 9
AfaI GTAC 2 cut(s) 188, 1121
AfiI CCNNNNNNNGG 2 cut(s) 167, 1292
AgeI ACCGGT 1 cut(s) 312
AgsI TTSAA 4 cut(s) 227, 370, 497, 1337
AjnI CCWGG 2 cut(s) 36, 1312
AjuI GAANNNNNNNTTGG 2 cut(s) 1069, 1101
AluBI AGCT 9 cut(s) 33, 177, 306, 354, 466, 515, 828, 833, 1319
AluI AGCT 9 cut(s) 33, 177, 306, 354, 466, 515, 828, 833, 1319
Alw26I GTCTC 2 cut(s) 674, 977
AlwI GGATC 2 cut(s) 127, 564
AlwNI CAGNNNCTG 1 cut(s) 1319
Ama87I CYCGRG 1 cut(s) 301
AoxI GGCC 1 cut(s) 158
ApoI RAATTY 1 cut(s) 606
ArsI GACNNNNNNTTYG 2 cut(s) 1290, 1322
AseI ATTAAT 2 cut(s) 477, 627
AsiGI ACCGGT 1 cut(s) 312
Asp700I GAANNNNTTC 3 cut(s) 254, 1062, 1436
AspS9I GGNCC 2 cut(s) 1298, 1380
AsuC2I CCSGG 2 cut(s) 144, 693
AsuHPI GGTGA 2 cut(s) 182, 422
AsuII TTCGAA 1 cut(s) 180
AvaI CYCGRG 1 cut(s) 301
AvaII GGWCC 2 cut(s) 1298, 1380
BanI GGYRCC 1 cut(s) 23
BbsI GAAGAC 1 cut(s) 1116
BccI CCATC 4 cut(s) 628, 656, 1221, 1225
BcgI CGANNNNNNTGC 2 cut(s) 872, 906
BciT130I CCWGG 2 cut(s) 38, 1314
BclI TGATCA 2 cut(s) 396, 1465
BcnI CCSGG 2 cut(s) 144, 693
BcoDI GTCTC 2 cut(s) 674, 977
BfaI CTAG 2 cut(s) 1302, 1455
BfmI CTRYAG 1 cut(s) 843
BglI GCCNNNNNGGC 1 cut(s) 719
BlpI GCTNAGC 1 cut(s) 829
Bme1390I CCNGG 4 cut(s) 38, 144, 693, 1314
Bme18I GGWCC 2 cut(s) 1298, 1380
BmeT110I CYCGRG 1 cut(s) 301
BmgT120I GGNCC 2 cut(s) 1298, 1380
BmiI GGNNCC 2 cut(s) 25, 1382
BmrFI CCNGG 4 cut(s) 38, 144, 693, 1314
BmrI ACTGGG 1 cut(s) 922
BmsI GCATC 3 cut(s) 441, 444, 1136
BmuI ACTGGG 1 cut(s) 922
BpiI GAAGAC 1 cut(s) 1116
BpmI CTGGAG 1 cut(s) 836
Bpu1102I GCTNAGC 1 cut(s) 829
Bpu14I TTCGAA 1 cut(s) 180
BpuEI CTTGAG 1 cut(s) 495
BpuMI CCSGG 2 cut(s) 144, 693
BsaHI GRCGYC 1 cut(s) 9
BsaJI CCNNGG 2 cut(s) 1220, 1416
BsaWI WCCGGW 1 cut(s) 312
Bsc4I CCNNNNNNNGG 2 cut(s) 167, 1292
Bse118I RCCGGY 1 cut(s) 312
Bse1I ACTGG 3 cut(s) 819, 928, 960
Bse3DI GCAATG 2 cut(s) 948, 1035
BseBI CCWGG 2 cut(s) 38, 1314
BseDI CCNNGG 2 cut(s) 1220, 1416
BseGI GGATG 6 cut(s) 208, 493, 964, 1151, 1189, 1236
BseLI CCNNNNNNNGG 2 cut(s) 167, 1292
BseMI GCAATG 2 cut(s) 948, 1035
BseMII CTCAG 5 cut(s) 653, 988, 1055, 1182, 1311
BseNI ACTGG 3 cut(s) 819, 928, 960
BseRI GAGGAG 1 cut(s) 1308
Bsh1285I CGRYCG 1 cut(s) 1399
BshFI GGCC 1 cut(s) 160
BshNI GGYRCC 1 cut(s) 23
BshTI ACCGGT 1 cut(s) 312
BsiEI CGRYCG 1 cut(s) 1399
BsiHKCI CYCGRG 1 cut(s) 301
BsiSI CCGG 3 cut(s) 143, 313, 693
BslFI GGGAC 1 cut(s) 918
BslI CCNNNNNNNGG 2 cut(s) 167, 1292
BsmAI GTCTC 2 cut(s) 674, 977
BsmFI GGGAC 1 cut(s) 918
BsnI GGCC 1 cut(s) 160
BsoBI CYCGRG 1 cut(s) 301
Bsp119I TTCGAA 1 cut(s) 180
Bsp143I GATC 8 cut(s) 48, 96, 119, 234, 396, 556, 1396, 1465
Bsp1720I GCTNAGC 1 cut(s) 829
BspACI CCGC 2 cut(s) 91, 215
BspANI GGCC 1 cut(s) 160
BspCNI CTCAG 5 cut(s) 652, 987, 1054, 1181, 1312
BspLI GGNNCC 2 cut(s) 25, 1382
BspPI GGATC 2 cut(s) 127, 564
BspT104I TTCGAA 1 cut(s) 180
BspT107I GGYRCC 1 cut(s) 23
BsrDI GCAATG 2 cut(s) 948, 1035
BsrFI RCCGGY 1 cut(s) 312
BsrI ACTGG 3 cut(s) 819, 928, 960
BssAI RCCGGY 1 cut(s) 312
BssECI CCNNGG 2 cut(s) 1220, 1416
BssMI GATC 8 cut(s) 48, 96, 119, 234, 396, 556, 1396, 1465
BssNI GRCGYC 1 cut(s) 9
BssT1I CCWWGG 1 cut(s) 1220
Bst2UI CCWGG 2 cut(s) 38, 1314
Bst4CI ACNGT 4 cut(s) 282, 403, 971, 1238
Bst6I CTCTTC 1 cut(s) 145
BstACI GRCGYC 1 cut(s) 9
BstBI TTCGAA 1 cut(s) 180
BstC8I GCNNGC 5 cut(s) 22, 158, 800, 877, 1330
BstDEI CTNAG 7 cut(s) 639, 829, 974, 1041, 1094, 1168, 1320
BstF5I GGATG 6 cut(s) 208, 493, 964, 1151, 1189, 1236
BstKTI GATC 8 cut(s) 51, 99, 122, 237, 399, 559, 1399, 1468
BstMAI GTCTC 2 cut(s) 674, 977
BstMBI GATC 8 cut(s) 48, 96, 119, 234, 396, 556, 1396, 1465
BstMCI CGRYCG 1 cut(s) 1399
BstMWI GCNNNNNNNGC 5 cut(s) 30, 412, 719, 1012, 1325
BstNI CCWGG 2 cut(s) 38, 1314
BstSCI CCNGG 4 cut(s) 36, 142, 691, 1312
BstSFI CTRYAG 1 cut(s) 843
BstV2I GAAGAC 1 cut(s) 1116
BstX2I RGATCY 1 cut(s) 556
BstYI RGATCY 1 cut(s) 556
BsuRI GGCC 1 cut(s) 160
BtgZI GCGATG 1 cut(s) 421
BtsCI GGATG 6 cut(s) 208, 493, 964, 1151, 1189, 1236
BtsI GCAGTG 1 cut(s) 708
BtsIMutI CAGTG 5 cut(s) 647, 708, 935, 1049, 1243
Cac8I GCNNGC 5 cut(s) 22, 158, 800, 877, 1330
CaiI CAGNNNCTG 1 cut(s) 1319
Cfr10I RCCGGY 1 cut(s) 312
Cfr13I GGNCC 2 cut(s) 1298, 1380
CseI GACGC 1 cut(s) 443
CsiI ACCWGGT 1 cut(s) 36
Csp6I GTAC 2 cut(s) 187, 1120
CspAI ACCGGT 1 cut(s) 312
CviAII CATG 4 cut(s) 407, 715, 1011, 1463
CviQI GTAC 2 cut(s) 187, 1120
DdeI CTNAG 7 cut(s) 639, 829, 974, 1041, 1094, 1168, 1320
DpnI GATC 8 cut(s) 50, 98, 121, 236, 398, 558, 1398, 1467
DpnII GATC 8 cut(s) 48, 96, 119, 234, 396, 556, 1396, 1465
EaeI YGGCCR 1 cut(s) 158
Eam1104I CTCTTC 1 cut(s) 145
EarI CTCTTC 1 cut(s) 145
Eco130I CCWWGG 1 cut(s) 1220
Eco47I GGWCC 2 cut(s) 1298, 1380
Eco57I CTGAAG 2 cut(s) 536, 1198
Eco88I CYCGRG 1 cut(s) 301
EcoO109I RGGNCCY 1 cut(s) 1298
EcoRII CCWGG 2 cut(s) 36, 1312
EcoT14I CCWWGG 1 cut(s) 1220
ErhI CCWWGG 1 cut(s) 1220
FaeI CATG 4 cut(s) 410, 718, 1014, 1466
FalI AAGNNNNNCTT 2 cut(s) 990, 1022
FaqI GGGAC 1 cut(s) 918
FatI CATG 4 cut(s) 406, 714, 1010, 1462
FauI CCCGC 1 cut(s) 222
FbaI TGATCA 2 cut(s) 396, 1465
FokI GGATG 6 cut(s) 195, 500, 971, 1158, 1196, 1243
FspBI CTAG 2 cut(s) 1302, 1455
GsuI CTGGAG 1 cut(s) 836
HaeIII GGCC 1 cut(s) 160
HapII CCGG 3 cut(s) 143, 313, 693
HgaI GACGC 1 cut(s) 443
Hin1I GRCGYC 1 cut(s) 9
Hin1II CATG 4 cut(s) 410, 718, 1014, 1466
HindIII AAGCTT 2 cut(s) 513, 826
HinfI GANTC 1 cut(s) 839
HpaII CCGG 3 cut(s) 143, 313, 693
HphI GGTGA 2 cut(s) 182, 422
Hpy166II GTNNAC 1 cut(s) 1380
Hpy188I TCNGA 2 cut(s) 652, 977
Hpy188III TCNNGA 4 cut(s) 123, 458, 554, 1247
Hpy8I GTNNAC 1 cut(s) 1380
HpyAV CCTTC 6 cut(s) 103, 712, 767, 1222, 1343, 1417
HpyCH4III ACNGT 4 cut(s) 282, 403, 971, 1238
HpyCH4IV ACGT 2 cut(s) 9, 1113
HpyCH4V TGCA 9 cut(s) 80, 200, 325, 406, 779, 911, 946, 1082, 1283
HpyF10VI GCNNNNNNNGC 5 cut(s) 30, 412, 719, 1012, 1325
HpyF3I CTNAG 7 cut(s) 639, 829, 974, 1041, 1094, 1168, 1320
HpySE526I ACGT 2 cut(s) 9, 1113
Hsp92I GRCGYC 1 cut(s) 9
Hsp92II CATG 4 cut(s) 410, 718, 1014, 1466
Ksp22I TGATCA 2 cut(s) 396, 1465
Kzo9I GATC 8 cut(s) 48, 96, 119, 234, 396, 556, 1396, 1465
LmnI GCTCC 1 cut(s) 1316
LweI GCATC 3 cut(s) 441, 444, 1136
MabI ACCWGGT 1 cut(s) 36
MaeI CTAG 2 cut(s) 1302, 1455
MaeII ACGT 2 cut(s) 9, 1113
MaeIII GTNAC 3 cut(s) 170, 1089, 1363
MalI GATC 8 cut(s) 50, 98, 121, 236, 398, 558, 1398, 1467
MboI GATC 8 cut(s) 48, 96, 119, 234, 396, 556, 1396, 1465
MflI RGATCY 1 cut(s) 556
MlyI GAGTC 1 cut(s) 848
MmeI TCCRAC 1 cut(s) 973
MroXI GAANNNNTTC 3 cut(s) 254, 1062, 1436
MseI TTAA 7 cut(s) 309, 471, 477, 591, 627, 1389, 1427
MslI CAYNNNNRTG 4 cut(s) 713, 941, 1182, 1375
MspI CCGG 3 cut(s) 143, 313, 693
MspR9I CCNGG 4 cut(s) 38, 144, 693, 1314
MvaI CCWGG 2 cut(s) 38, 1314
MwoI GCNNNNNNNGC 5 cut(s) 30, 412, 719, 1012, 1325
NciI CCSGG 2 cut(s) 144, 693
NdeII GATC 8 cut(s) 48, 96, 119, 234, 396, 556, 1396, 1465
NlaIII CATG 4 cut(s) 410, 718, 1014, 1466
NlaIV GGNNCC 2 cut(s) 25, 1382
NmeAIII GCCGAG 1 cut(s) 1397
NmuCI GTSAC 2 cut(s) 170, 1363
NspV TTCGAA 1 cut(s) 180
PdmI GAANNNNTTC 3 cut(s) 254, 1062, 1436
PfoI TCCNGGA 1 cut(s) 1312
PinAI ACCGGT 1 cut(s) 312
Ple19I CGATCG 1 cut(s) 1399
PleI GAGTC 1 cut(s) 847
PpsI GAGTC 1 cut(s) 847
PpuMI RGGWCCY 1 cut(s) 1298
PshBI ATTAAT 2 cut(s) 477, 627
PsiI TTATAA 1 cut(s) 1023
Psp5II RGGWCCY 1 cut(s) 1298
Psp6I CCWGG 2 cut(s) 36, 1312
PspGI CCWGG 2 cut(s) 36, 1312
PspN4I GGNNCC 2 cut(s) 25, 1382
PspPI GGNCC 2 cut(s) 1298, 1380
PspPPI RGGWCCY 1 cut(s) 1298
PstNI CAGNNNCTG 1 cut(s) 1319
PsuI RGATCY 1 cut(s) 556
PvuI CGATCG 1 cut(s) 1399
RsaI GTAC 2 cut(s) 188, 1121
RsaNI GTAC 2 cut(s) 187, 1120
RseI CAYNNNNRTG 4 cut(s) 713, 941, 1182, 1375
SaqAI TTAA 7 cut(s) 309, 471, 477, 591, 627, 1389, 1427
Sau3AI GATC 8 cut(s) 48, 96, 119, 234, 396, 556, 1396, 1465
Sau96I GGNCC 2 cut(s) 1298, 1380
SchI GAGTC 1 cut(s) 848
ScrFI CCNGG 4 cut(s) 38, 144, 693, 1314
SexAI ACCWGGT 1 cut(s) 36
SfaNI GCATC 3 cut(s) 441, 444, 1136
SfcI CTRYAG 1 cut(s) 843
SfuI TTCGAA 1 cut(s) 180
SinI GGWCC 2 cut(s) 1298, 1380
SmiMI CAYNNNNRTG 4 cut(s) 713, 941, 1182, 1375
SmlI CTYRAG 1 cut(s) 510
SmoI CTYRAG 1 cut(s) 510
SsiI CCGC 2 cut(s) 91, 215
SspMI CTAG 2 cut(s) 1302, 1455
StyD4I CCNGG 4 cut(s) 36, 142, 691, 1312
StyI CCWWGG 1 cut(s) 1220
TaaI ACNGT 4 cut(s) 282, 403, 971, 1238
TaiI ACGT 2 cut(s) 12, 1116
TaqI TCGA 4 cut(s) 180, 611, 1066, 1446
Tru1I TTAA 7 cut(s) 309, 471, 477, 591, 627, 1389, 1427
Tru9I TTAA 7 cut(s) 309, 471, 477, 591, 627, 1389, 1427
TscAI CASTG 5 cut(s) 647, 715, 935, 1049, 1243
TseFI GTSAC 2 cut(s) 170, 1363
Tsp45I GTSAC 2 cut(s) 170, 1363
TspDTI ATGAA 8 cut(s) 731, 844, 975, 1071, 1166, 1200, 1215, 1445
TspGWI ACGGA 2 cut(s) 664, 797
TspRI CASTG 5 cut(s) 647, 715, 935, 1049, 1243
VpaK11BI GGWCC 2 cut(s) 1298, 1380
VspI ATTAAT 2 cut(s) 477, 627
XapI RAATTY 1 cut(s) 606
XcmI CCANNNNNNNNNTGG 1 cut(s) 34
XmnI GAANNNNTTC 3 cut(s) 254, 1062, 1436
XspI CTAG 2 cut(s) 1302, 1455
ZraI GACGTC 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.